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28 Commits
v1.0.5 ... AnDE

Author SHA1 Message Date
0e24135d46 Complete Conditional Mutual Information and test 2024-05-15 11:09:23 +02:00
521bfd2a8e Remove unoptimized implementation of conditionalEntropy 2024-05-15 01:24:27 +02:00
e2e0fb0c40 Implement Conditional Mutual Information 2024-05-15 00:48:02 +02:00
56b62a67cc Change BoostAODE tests results because folding upgrade 2024-05-12 20:23:05 +02:00
c0fc107abb Fix catch2 submodule config 2024-05-12 19:05:36 +02:00
d8c44b3b7c Add tests to check the correct version of the mdlp, folding and json libraries 2024-05-12 12:22:44 +02:00
6ab7cd2cbd Remove submodule catch from tests/lib 2024-05-12 11:05:53 +02:00
b578ea8a2d Remove module lib/catch2 2024-05-12 11:04:42 +02:00
9a752d15dc Change build cmake folder names to Debug & Release 2024-05-09 10:51:52 +02:00
4992685e94 Add devcontainer to repository
Fix update_coverage.py with lcov2.1 output
2024-05-08 06:42:19 +00:00
346b693c79 Update pdf coverage report 2024-05-06 18:28:15 +02:00
164c8bd90c Update changelog 2024-05-06 18:02:18 +02:00
ced29a2c2e Refactor coverage report generation
Add some tests to reach 99%
2024-05-06 17:56:00 +02:00
0ec53f405f Fix mistakes in feature selection in SPnDE
Complete the first A2DE test
Update version number
2024-05-05 11:14:01 +02:00
f806015b29 Implement SPnDE and A2DE 2024-05-05 01:35:17 +02:00
8115f25c06 Fix mispell mistake in doc 2024-05-02 10:53:15 +02:00
618a1e539c Return File Library to /lib as it is needed by Local Discretization (factorize) 2024-04-30 20:31:14 +02:00
7aeffba740 Add list of models to README 2024-04-30 18:59:38 +02:00
e79ea63afb Merge pull request 'convergence_best' (#27) from convergence_best into main
Add convergence_best as hyperparameter to allow to take the last or the best accuracy as the accuracy to compare to in convergence

Reviewed-on: #27
2024-04-30 16:22:08 +00:00
3c7382a93a Enhance tests coverage and report output 2024-04-30 14:00:24 +02:00
b4a222b100 Update gcovr configuration 2024-04-30 12:06:32 +02:00
23ef0cc5f7 Remove catch2 as submodule
Add link to pdf coverage report
2024-04-30 11:02:23 +02:00
793b2d3cd5 Refactor TestUtils to allow partial and shuffle dataset load 2024-04-30 02:11:14 +02:00
ae469b8146 Add hyperparameter convergence_best
move test libraries to test folder
2024-04-30 00:52:09 +02:00
f014928411 Update Makefile actions for coverage 2024-04-21 18:54:13 +02:00
c4b563a339 Add link to the coverage report in the README.md coverage label 2024-04-21 16:44:35 +02:00
49bb0582e6 Add Library Logo 2024-04-21 11:31:27 +02:00
b4c5261e01 Delete .github/workflows/main.yml 2024-04-20 17:54:56 +00:00
365 changed files with 35000 additions and 339 deletions

57
.devcontainer/Dockerfile Normal file
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@@ -0,0 +1,57 @@
FROM mcr.microsoft.com/devcontainers/cpp:ubuntu22.04
ARG REINSTALL_CMAKE_VERSION_FROM_SOURCE="3.22.2"
# Optionally install the cmake for vcpkg
COPY ./reinstall-cmake.sh /tmp/
RUN if [ "${REINSTALL_CMAKE_VERSION_FROM_SOURCE}" != "none" ]; then \
chmod +x /tmp/reinstall-cmake.sh && /tmp/reinstall-cmake.sh ${REINSTALL_CMAKE_VERSION_FROM_SOURCE}; \
fi \
&& rm -f /tmp/reinstall-cmake.sh
# [Optional] Uncomment this section to install additional vcpkg ports.
# RUN su vscode -c "${VCPKG_ROOT}/vcpkg install <your-port-name-here>"
# [Optional] Uncomment this section to install additional packages.
RUN apt-get update && export DEBIAN_FRONTEND=noninteractive \
&& apt-get -y install --no-install-recommends wget software-properties-common libdatetime-perl libcapture-tiny-perl libdatetime-format-dateparse-perl libgd-perl
# Add PPA for GCC 13
RUN add-apt-repository ppa:ubuntu-toolchain-r/test
RUN apt-get update
# Install GCC 13.1
RUN apt-get install -y gcc-13 g++-13
# Install lcov 2.1
RUN wget --quiet https://github.com/linux-test-project/lcov/releases/download/v2.1/lcov-2.1.tar.gz && \
tar -xvf lcov-2.1.tar.gz && \
cd lcov-2.1 && \
make install
RUN rm lcov-2.1.tar.gz
RUN rm -fr lcov-2.1
# Install Miniconda
RUN mkdir -p /opt/conda
RUN wget --quiet "https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-aarch64.sh" -O /opt/conda/miniconda.sh && \
bash /opt/conda/miniconda.sh -b -p /opt/miniconda
# Add conda to PATH
ENV PATH=/opt/miniconda/bin:$PATH
# add CXX and CC to the environment with gcc 13
ENV CXX=/usr/bin/g++-13
ENV CC=/usr/bin/gcc-13
# link the last gcov version
RUN rm /usr/bin/gcov
RUN ln -s /usr/bin/gcov-13 /usr/bin/gcov
# change ownership of /opt/miniconda to vscode user
RUN chown -R vscode:vscode /opt/miniconda
USER vscode
RUN conda init
RUN conda install -y -c conda-forge yaml pytorch

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@@ -0,0 +1,37 @@
// For format details, see https://aka.ms/devcontainer.json. For config options, see the
// README at: https://github.com/devcontainers/templates/tree/main/src/cpp
{
"name": "C++",
"build": {
"dockerfile": "Dockerfile"
},
// "features": {
// "ghcr.io/devcontainers/features/conda:1": {}
// }
// Features to add to the dev container. More info: https://containers.dev/features.
// "features": {},
// Use 'forwardPorts' to make a list of ports inside the container available locally.
// "forwardPorts": [],
// Use 'postCreateCommand' to run commands after the container is created.
"postCreateCommand": "make release && make debug && echo 'Done!'",
// Configure tool-specific properties.
// "customizations": {},
"customizations": {
// Configure properties specific to VS Code.
"vscode": {
"settings": {},
"extensions": [
"ms-vscode.cpptools",
"ms-vscode.cpptools-extension-pack",
"ms-vscode.cpptools-themes",
"ms-vscode.cmake-tools",
"ms-azuretools.vscode-docker",
"jbenden.c-cpp-flylint",
"matepek.vscode-catch2-test-adapter",
"GitHub.copilot"
]
}
}
// Uncomment to connect as root instead. More info: https://aka.ms/dev-containers-non-root.
// "remoteUser": "root"
}

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@@ -0,0 +1,59 @@
#!/usr/bin/env bash
#-------------------------------------------------------------------------------------------------------------
# Copyright (c) Microsoft Corporation. All rights reserved.
# Licensed under the MIT License. See https://go.microsoft.com/fwlink/?linkid=2090316 for license information.
#-------------------------------------------------------------------------------------------------------------
#
set -e
CMAKE_VERSION=${1:-"none"}
if [ "${CMAKE_VERSION}" = "none" ]; then
echo "No CMake version specified, skipping CMake reinstallation"
exit 0
fi
# Cleanup temporary directory and associated files when exiting the script.
cleanup() {
EXIT_CODE=$?
set +e
if [[ -n "${TMP_DIR}" ]]; then
echo "Executing cleanup of tmp files"
rm -Rf "${TMP_DIR}"
fi
exit $EXIT_CODE
}
trap cleanup EXIT
echo "Installing CMake..."
apt-get -y purge --auto-remove cmake
mkdir -p /opt/cmake
architecture=$(dpkg --print-architecture)
case "${architecture}" in
arm64)
ARCH=aarch64 ;;
amd64)
ARCH=x86_64 ;;
*)
echo "Unsupported architecture ${architecture}."
exit 1
;;
esac
CMAKE_BINARY_NAME="cmake-${CMAKE_VERSION}-linux-${ARCH}.sh"
CMAKE_CHECKSUM_NAME="cmake-${CMAKE_VERSION}-SHA-256.txt"
TMP_DIR=$(mktemp -d -t cmake-XXXXXXXXXX)
echo "${TMP_DIR}"
cd "${TMP_DIR}"
curl -sSL "https://github.com/Kitware/CMake/releases/download/v${CMAKE_VERSION}/${CMAKE_BINARY_NAME}" -O
curl -sSL "https://github.com/Kitware/CMake/releases/download/v${CMAKE_VERSION}/${CMAKE_CHECKSUM_NAME}" -O
sha256sum -c --ignore-missing "${CMAKE_CHECKSUM_NAME}"
sh "${TMP_DIR}/${CMAKE_BINARY_NAME}" --prefix=/opt/cmake --skip-license
ln -s /opt/cmake/bin/cmake /usr/local/bin/cmake
ln -s /opt/cmake/bin/ctest /usr/local/bin/ctest

12
.github/dependabot.yml vendored Normal file
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@@ -0,0 +1,12 @@
# To get started with Dependabot version updates, you'll need to specify which
# package ecosystems to update and where the package manifests are located.
# Please see the documentation for more information:
# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
# https://containers.dev/guide/dependabot
version: 2
updates:
- package-ecosystem: "devcontainers"
directory: "/"
schedule:
interval: weekly

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@@ -1,12 +0,0 @@
name: CI
on: push
jobs:
tests:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- run: sudo apt-get install ninja-build cmake
- run: ninja --version
- run: cmake --version
- run: g++ --version

1
.gitignore vendored
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@@ -39,4 +39,5 @@ cmake-build*/**
puml/**
.vscode/settings.json
sample/build
**/.DS_Store

10
.gitmodules vendored
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@@ -3,11 +3,6 @@
url = https://github.com/rmontanana/mdlp
main = main
update = merge
[submodule "lib/catch2"]
path = lib/catch2
main = v2.x
update = merge
url = https://github.com/catchorg/Catch2.git
[submodule "lib/json"]
path = lib/json
url = https://github.com/nlohmann/json.git
@@ -18,3 +13,8 @@
url = https://github.com/rmontanana/folding
main = main
update = merge
[submodule "tests/lib/catch2"]
path = tests/lib/catch2
url = https://github.com/catchorg/Catch2.git
main = main
update = merge

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@@ -0,0 +1,4 @@
{
"sonarCloudOrganization": "rmontanana",
"projectKey": "rmontanana_BayesNet"
}

2
.vscode/launch.json vendored
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@@ -16,7 +16,7 @@
"name": "test",
"program": "${workspaceFolder}/build_debug/tests/TestBayesNet",
"args": [
"Block Update"
"[Node]"
],
"cwd": "${workspaceFolder}/build_debug/tests"
},

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@@ -5,6 +5,29 @@ All notable changes to this project will be documented in this file.
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
## [Unreleased]
### Added
- Library logo generated with <https://openart.ai> to README.md
- Link to the coverage report in the README.md coverage label.
- *convergence_best* hyperparameter to the BoostAODE class, to control the way the prior accuracy is computed if convergence is set. Default value is *false*.
- SPnDE model.
- A2DE model.
- A2DE & SPnDE tests.
- Add tests to reach 99% of coverage.
- Add tests to check the correct version of the mdlp, folding and json libraries.
### Internal
- Create library ShuffleArffFile to limit the number of samples with a parameter and shuffle them.
- Refactor catch2 library location to test/lib
- Refactor loadDataset function in tests.
- Remove conditionalEdgeWeights method in BayesMetrics.
- Refactor Coverage Report generation.
- Add devcontainer to work on apple silicon.
- Change build cmake folder names to Debug & Release.
## [1.0.5] 2024-04-20
### Added
@@ -25,6 +48,11 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- The worse model count in BoostAODE is reset to 0 every time a new model produces better accuracy, so the tolerance of the model is meant to be the number of **consecutive** models that produce worse accuracy.
- Default hyperparameter values in BoostAODE: bisection is true, maxTolerance is 3, convergence is true
### Removed
- The 'predict_single' hyperparameter from the BoostAODE class.
- The 'repeatSparent' hyperparameter from the BoostAODE class.
## [1.0.4] 2024-03-06
### Added

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@@ -1,7 +1,7 @@
cmake_minimum_required(VERSION 3.20)
project(BayesNet
VERSION 1.0.5
VERSION 1.0.5.1
DESCRIPTION "Bayesian Network and basic classifiers Library."
HOMEPAGE_URL "https://github.com/rmontanana/bayesnet"
LANGUAGES CXX
@@ -25,8 +25,9 @@ set(CMAKE_CXX_EXTENSIONS OFF)
set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${TORCH_CXX_FLAGS}")
SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -pthread")
set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -fprofile-arcs -ftest-coverage -O0 -g")
set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -fprofile-arcs -ftest-coverage -fno-elide-constructors -fno-default-inline")
set(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE} -O3")
# Options
# -------
option(ENABLE_CLANG_TIDY "Enable to add clang tidy." OFF)
@@ -60,20 +61,20 @@ endif (ENABLE_CLANG_TIDY)
# External libraries - dependencies of BayesNet
# ---------------------------------------------
# include(FetchContent)
add_git_submodule("lib/mdlp")
add_git_submodule("lib/json")
add_git_submodule("lib/mdlp")
add_subdirectory("lib/Files")
# Subdirectories
# --------------
add_subdirectory(config)
add_subdirectory(lib/Files)
add_subdirectory(bayesnet)
# Testing
# -------
if (ENABLE_TESTING)
MESSAGE("Testing enabled")
add_git_submodule("lib/catch2")
add_subdirectory(tests/lib/catch2)
include(CTest)
add_subdirectory(tests)
endif (ENABLE_TESTING)

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@@ -2,13 +2,15 @@ SHELL := /bin/bash
.DEFAULT_GOAL := help
.PHONY: viewcoverage coverage setup help install uninstall diagrams buildr buildd test clean debug release sample updatebadge
f_release = build_release
f_debug = build_debug
f_release = build_Release
f_debug = build_Debug
f_diagrams = diagrams
app_targets = BayesNet
test_targets = TestBayesNet
clang-uml = clang-uml
plantuml = plantuml
lcov = lcov
genhtml = genhtml
dot = dot
n_procs = -j 16
@@ -97,7 +99,7 @@ sample: ## Build sample
opt = ""
test: ## Run tests (opt="-s") to verbose output the tests, (opt="-c='Test Maximum Spanning Tree'") to run only that section
@echo ">>> Running BayesNet & Platform tests...";
@echo ">>> Running BayesNet tests...";
@$(MAKE) clean
@cmake --build $(f_debug) -t $(test_targets) $(n_procs)
@for t in $(test_targets); do \
@@ -112,27 +114,33 @@ test: ## Run tests (opt="-s") to verbose output the tests, (opt="-c='Test Maximu
coverage: ## Run tests and generate coverage report (build/index.html)
@echo ">>> Building tests with coverage..."
@$(MAKE) test
@gcovr $(f_debug)/tests
@echo ">>> Done";
viewcoverage: ## Run tests, generate coverage report and upload it to codecov (build/index.html)
@echo ">>> Building tests with coverage..."
@$(MAKE) coverage
@which $(lcov) || (echo ">>> Please install lcov"; exit 1)
@if [ ! -f $(f_debug)/tests/coverage.info ] ; then $(MAKE) test ; fi
@echo ">>> Building report..."
@cd $(f_debug)/tests; \
lcov --directory . --capture --output-file coverage.info >/dev/null 2>&1; \
lcov --remove coverage.info '/usr/*' --output-file coverage.info >/dev/null 2>&1; \
lcov --remove coverage.info 'lib/*' --output-file coverage.info >/dev/null 2>&1; \
lcov --remove coverage.info 'libtorch/*' --output-file coverage.info >/dev/null 2>&1; \
lcov --remove coverage.info 'tests/*' --output-file coverage.info >/dev/null 2>&1; \
lcov --remove coverage.info 'bayesnet/utils/loguru.*' --output-file coverage.info >/dev/null 2>&1; \
genhtml coverage.info --output-directory coverage >/dev/null 2>&1;
$(lcov) --directory CMakeFiles --capture --demangle-cpp --ignore-errors source,source --output-file coverage.info >/dev/null 2>&1; \
$(lcov) --remove coverage.info '/usr/*' --output-file coverage.info >/dev/null 2>&1; \
$(lcov) --remove coverage.info 'lib/*' --output-file coverage.info >/dev/null 2>&1; \
$(lcov) --remove coverage.info 'libtorch/*' --output-file coverage.info >/dev/null 2>&1; \
$(lcov) --remove coverage.info 'tests/*' --output-file coverage.info >/dev/null 2>&1; \
$(lcov) --remove coverage.info 'bayesnet/utils/loguru.*' --ignore-errors unused --output-file coverage.info >/dev/null 2>&1; \
$(lcov) --remove coverage.info '/opt/miniconda/*' --ignore-errors unused --output-file coverage.info >/dev/null 2>&1; \
$(lcov) --summary coverage.info
@$(MAKE) updatebadge
@xdg-open $(f_debug)/tests/coverage/index.html || open $(f_debug)/tests/coverage/index.html 2>/dev/null
@echo ">>> Done";
viewcoverage: ## View the html coverage report
@which $(genhtml) || (echo ">>> Please install lcov (genhtml not found)"; exit 1)
@$(genhtml) $(f_debug)/tests/coverage.info --demangle-cpp --output-directory html --title "BayesNet Coverage Report" -s -k -f --legend >/dev/null 2>&1;
@xdg-open html/index.html || open html/index.html 2>/dev/null
@echo ">>> Done";
updatebadge: ## Update the coverage badge in README.md
@which python || (echo ">>> Please install python"; exit 1)
@if [ ! -f $(f_debug)/tests/coverage.info ]; then \
echo ">>> No coverage.info file found. Run make coverage first!"; \
exit 1; \
fi
@echo ">>> Updating coverage badge..."
@env python update_coverage.py $(f_debug)/tests
@echo ">>> Done";

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@@ -1,11 +1,13 @@
# BayesNet
# <img src="logo.png" alt="logo" width="50"/> BayesNet
![C++](https://img.shields.io/badge/c++-%2300599C.svg?style=flat&logo=c%2B%2B&logoColor=white)
[![License: MIT](https://img.shields.io/badge/License-MIT-blue.svg)](<https://opensource.org/licenses/MIT>)
![Gitea Release](https://img.shields.io/gitea/v/release/rmontanana/bayesnet?gitea_url=https://gitea.rmontanana.es:3000)
[![Codacy Badge](https://app.codacy.com/project/badge/Grade/cf3e0ac71d764650b1bf4d8d00d303b1)](https://app.codacy.com/gh/Doctorado-ML/BayesNet/dashboard?utm_source=gh&utm_medium=referral&utm_content=&utm_campaign=Badge_grade)
[![Security Rating](https://sonarcloud.io/api/project_badges/measure?project=rmontanana_BayesNet&metric=security_rating)](https://sonarcloud.io/summary/new_code?id=rmontanana_BayesNet)
[![Reliability Rating](https://sonarcloud.io/api/project_badges/measure?project=rmontanana_BayesNet&metric=reliability_rating)](https://sonarcloud.io/summary/new_code?id=rmontanana_BayesNet)
![Gitea Last Commit](https://img.shields.io/gitea/last-commit/rmontanana/bayesnet?gitea_url=https://gitea.rmontanana.es:3000&logo=gitea)
![Static Badge](https://img.shields.io/badge/Coverage-97,2%25-green)
[![Coverage Badge](https://img.shields.io/badge/Coverage-99,0%25-green)](html/index.html)
Bayesian Network Classifiers using libtorch from scratch
@@ -20,6 +22,12 @@ unzip libtorch-shared-with-deps-latest.zips
## Setup
### Getting the code
```bash
git clone --recurse-submodules https://github.com/doctorado-ml/bayesnet
```
### Release
```bash
@@ -33,7 +41,13 @@ sudo make install
```bash
make debug
make test
```
### Coverage
```bash
make coverage
make viewcoverage
```
### Sample app
@@ -47,7 +61,25 @@ make sample fname=tests/data/glass.arff
## Models
### [BoostAODE](docs/BoostAODE.md)
#### - TAN
#### - KDB
#### - SPODE
#### - AODE
#### - [BoostAODE](docs/BoostAODE.md)
### With Local Discretization
#### - TANLd
#### - KDBLd
#### - SPODELd
#### - AODELd
## Diagrams
@@ -58,3 +90,7 @@ make sample fname=tests/data/glass.arff
### Dependency Diagram
![BayesNet Dependency Diagram](diagrams/dependency.svg)
## Coverage report
### [Coverage report](docs/coverage.pdf)

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@@ -0,0 +1,38 @@
// ***************************************************************
// SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez
// SPDX-FileType: SOURCE
// SPDX-License-Identifier: MIT
// ***************************************************************
#include "SPnDE.h"
namespace bayesnet {
SPnDE::SPnDE(std::vector<int> parents) : Classifier(Network()), parents(parents) {}
void SPnDE::buildModel(const torch::Tensor& weights)
{
// 0. Add all nodes to the model
addNodes();
std::vector<int> attributes;
for (int i = 0; i < static_cast<int>(features.size()); ++i) {
if (std::find(parents.begin(), parents.end(), i) == parents.end()) {
attributes.push_back(i);
}
}
// 1. Add edges from the class node to all other nodes
// 2. Add edges from the parents nodes to all other nodes
for (const auto& attribute : attributes) {
model.addEdge(className, features[attribute]);
for (const auto& root : parents) {
model.addEdge(features[root], features[attribute]);
}
}
}
std::vector<std::string> SPnDE::graph(const std::string& name) const
{
return model.graph(name);
}
}

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@@ -0,0 +1,26 @@
// ***************************************************************
// SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez
// SPDX-FileType: SOURCE
// SPDX-License-Identifier: MIT
// ***************************************************************
#ifndef SPnDE_H
#define SPnDE_H
#include <vector>
#include "Classifier.h"
namespace bayesnet {
class SPnDE : public Classifier {
public:
explicit SPnDE(std::vector<int> parents);
virtual ~SPnDE() = default;
std::vector<std::string> graph(const std::string& name = "SPnDE") const override;
protected:
void buildModel(const torch::Tensor& weights) override;
private:
std::vector<int> parents;
};
}
#endif

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@@ -0,0 +1,40 @@
// ***************************************************************
// SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez
// SPDX-FileType: SOURCE
// SPDX-License-Identifier: MIT
// ***************************************************************
#include "A2DE.h"
namespace bayesnet {
A2DE::A2DE(bool predict_voting) : Ensemble(predict_voting)
{
validHyperparameters = { "predict_voting" };
}
void A2DE::setHyperparameters(const nlohmann::json& hyperparameters_)
{
auto hyperparameters = hyperparameters_;
if (hyperparameters.contains("predict_voting")) {
predict_voting = hyperparameters["predict_voting"];
hyperparameters.erase("predict_voting");
}
Classifier::setHyperparameters(hyperparameters);
}
void A2DE::buildModel(const torch::Tensor& weights)
{
models.clear();
significanceModels.clear();
for (int i = 0; i < features.size() - 1; ++i) {
for (int j = i + 1; j < features.size(); ++j) {
auto model = std::make_unique<SPnDE>(std::vector<int>({ i, j }));
models.push_back(std::move(model));
}
}
n_models = static_cast<unsigned>(models.size());
significanceModels = std::vector<double>(n_models, 1.0);
}
std::vector<std::string> A2DE::graph(const std::string& title) const
{
return Ensemble::graph(title);
}
}

22
bayesnet/ensembles/A2DE.h Normal file
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@@ -0,0 +1,22 @@
// ***************************************************************
// SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez
// SPDX-FileType: SOURCE
// SPDX-License-Identifier: MIT
// ***************************************************************
#ifndef A2DE_H
#define A2DE_H
#include "bayesnet/classifiers/SPnDE.h"
#include "Ensemble.h"
namespace bayesnet {
class A2DE : public Ensemble {
public:
A2DE(bool predict_voting = false);
virtual ~A2DE() {};
void setHyperparameters(const nlohmann::json& hyperparameters) override;
std::vector<std::string> graph(const std::string& title = "A2DE") const override;
protected:
void buildModel(const torch::Tensor& weights) override;
};
}
#endif

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@@ -13,13 +13,14 @@
#include "bayesnet/feature_selection/FCBF.h"
#include "bayesnet/feature_selection/IWSS.h"
#include "BoostAODE.h"
#include "lib/log/loguru.cpp"
namespace bayesnet {
BoostAODE::BoostAODE(bool predict_voting) : Ensemble(predict_voting)
{
validHyperparameters = {
"maxModels", "bisection", "order", "convergence", "threshold",
"maxModels", "bisection", "order", "convergence", "convergence_best", "threshold",
"select_features", "maxTolerance", "predict_voting", "block_update"
};
@@ -70,6 +71,10 @@ namespace bayesnet {
convergence = hyperparameters["convergence"];
hyperparameters.erase("convergence");
}
if (hyperparameters.contains("convergence_best")) {
convergence_best = hyperparameters["convergence_best"];
hyperparameters.erase("convergence_best");
}
if (hyperparameters.contains("bisection")) {
bisection = hyperparameters["bisection"];
hyperparameters.erase("bisection");
@@ -262,6 +267,13 @@ namespace bayesnet {
}
void BoostAODE::trainModel(const torch::Tensor& weights)
{
//
// Logging setup
//
loguru::set_thread_name("BoostAODE");
loguru::g_stderr_verbosity = loguru::Verbosity_OFF;
loguru::add_file("boostAODE.log", loguru::Truncate, loguru::Verbosity_MAX);
// Algorithm based on the adaboost algorithm for classification
// as explained in Ensemble methods (Zhi-Hua Zhou, 2012)
fitted = true;
@@ -304,8 +316,9 @@ namespace bayesnet {
{ return std::find(begin(featuresUsed), end(featuresUsed), x) != end(featuresUsed);}),
end(featureSelection)
);
int k = pow(2, tolerance);
int k = bisection ? pow(2, tolerance) : 1;
int counter = 0; // The model counter of the current pack
VLOG_SCOPE_F(1, "counter=%d k=%d featureSelection.size: %zu", counter, k, featureSelection.size());
while (counter++ < k && featureSelection.size() > 0) {
auto feature = featureSelection[0];
featureSelection.erase(featureSelection.begin());
@@ -324,6 +337,7 @@ namespace bayesnet {
models.push_back(std::move(model));
significanceModels.push_back(alpha_t);
n_models++;
VLOG_SCOPE_F(2, "numItemsPack: %d n_models: %d featuresUsed: %zu", numItemsPack, n_models, featuresUsed.size());
}
if (block_update) {
std::tie(weights_, alpha_t, finished) = update_weights_block(k, y_train, weights_);
@@ -337,20 +351,28 @@ namespace bayesnet {
improvement = accuracy - priorAccuracy;
}
if (improvement < convergence_threshold) {
VLOG_SCOPE_F(3, " (improvement<threshold) tolerance: %d numItemsPack: %d improvement: %f prior: %f current: %f", tolerance, numItemsPack, improvement, priorAccuracy, accuracy);
tolerance++;
} else {
VLOG_SCOPE_F(3, "* (improvement>=threshold) Reset. tolerance: %d numItemsPack: %d improvement: %f prior: %f current: %f", tolerance, numItemsPack, improvement, priorAccuracy, accuracy);
tolerance = 0; // Reset the counter if the model performs better
numItemsPack = 0;
}
if (convergence_best) {
// Keep the best accuracy until now as the prior accuracy
priorAccuracy = std::max(accuracy, priorAccuracy);
// priorAccuracy = accuracy;
} else {
// Keep the last accuray obtained as the prior accuracy
priorAccuracy = accuracy;
}
}
VLOG_SCOPE_F(1, "tolerance: %d featuresUsed.size: %zu features.size: %zu", tolerance, featuresUsed.size(), features.size());
finished = finished || tolerance > maxTolerance || featuresUsed.size() == features.size();
}
if (tolerance > maxTolerance) {
if (numItemsPack < n_models) {
notes.push_back("Convergence threshold reached & " + std::to_string(numItemsPack) + " models eliminated");
VLOG_SCOPE_F(4, "Convergence threshold reached & %d models eliminated of %d", numItemsPack, n_models);
for (int i = 0; i < numItemsPack; ++i) {
significanceModels.pop_back();
models.pop_back();
@@ -358,6 +380,7 @@ namespace bayesnet {
}
} else {
notes.push_back("Convergence threshold reached & 0 models eliminated");
VLOG_SCOPE_F(4, "Convergence threshold reached & 0 models eliminated n_models=%d numItemsPack=%d", n_models, numItemsPack);
}
}
if (featuresUsed.size() != features.size()) {

View File

@@ -11,19 +11,19 @@
#include "bayesnet/feature_selection/FeatureSelect.h"
#include "Ensemble.h"
namespace bayesnet {
struct {
const struct {
std::string CFS = "CFS";
std::string FCBF = "FCBF";
std::string IWSS = "IWSS";
}SelectFeatures;
struct {
const struct {
std::string ASC = "asc";
std::string DESC = "desc";
std::string RAND = "rand";
}Orders;
class BoostAODE : public Ensemble {
public:
BoostAODE(bool predict_voting = false);
explicit BoostAODE(bool predict_voting = false);
virtual ~BoostAODE() = default;
std::vector<std::string> graph(const std::string& title = "BoostAODE") const override;
void setHyperparameters(const nlohmann::json& hyperparameters_) override;
@@ -39,6 +39,7 @@ namespace bayesnet {
int maxTolerance = 3;
std::string order_algorithm; // order to process the KBest features asc, desc, rand
bool convergence = true; //if true, stop when the model does not improve
bool convergence_best = false; // wether to keep the best accuracy to the moment or the last accuracy as prior accuracy
bool selectFeatures = false; // if true, use feature selection
std::string select_features_algorithm = Orders.DESC; // Selected feature selection algorithm
FeatureSelect* featureSelector = nullptr;

View File

@@ -410,11 +410,7 @@ namespace bayesnet {
result.insert(it2, fatherName);
ending = false;
}
} else {
throw std::logic_error("Error in topological sort because of node " + feature + " is not in result");
}
} else {
throw std::logic_error("Error in topological sort because of node father " + fatherName + " is not in result");
}
}
}

View File

@@ -9,7 +9,7 @@
namespace bayesnet {
Node::Node(const std::string& name)
: name(name), numStates(0), cpTable(torch::Tensor()), parents(std::vector<Node*>()), children(std::vector<Node*>())
: name(name)
{
}
void Node::clear()
@@ -96,7 +96,6 @@ namespace bayesnet {
// Get dimensions of the CPT
dimensions.push_back(numStates);
transform(parents.begin(), parents.end(), back_inserter(dimensions), [](const auto& parent) { return parent->getNumStates(); });
// Create a tensor of zeros with the dimensions of the CPT
cpTable = torch::zeros(dimensions, torch::kFloat) + laplaceSmoothing;
// Fill table with counts

View File

@@ -12,14 +12,6 @@
#include <torch/torch.h>
namespace bayesnet {
class Node {
private:
std::string name;
std::vector<Node*> parents;
std::vector<Node*> children;
int numStates; // number of states of the variable
torch::Tensor cpTable; // Order of indices is 0-> node variable, 1-> 1st parent, 2-> 2nd parent, ...
std::vector<int64_t> dimensions; // dimensions of the cpTable
std::vector<std::pair<std::string, std::string>> combinations(const std::vector<std::string>&);
public:
explicit Node(const std::string&);
void clear();
@@ -37,6 +29,14 @@ namespace bayesnet {
unsigned minFill();
std::vector<std::string> graph(const std::string& clasName); // Returns a std::vector of std::strings representing the graph in graphviz format
float getFactorValue(std::map<std::string, int>&);
private:
std::string name;
std::vector<Node*> parents;
std::vector<Node*> children;
int numStates = 0; // number of states of the variable
torch::Tensor cpTable; // Order of indices is 0-> node variable, 1-> 1st parent, 2-> 2nd parent, ...
std::vector<int64_t> dimensions; // dimensions of the cpTable
std::vector<std::pair<std::string, std::string>> combinations(const std::vector<std::string>&);
};
}
#endif

View File

@@ -4,23 +4,26 @@
// SPDX-License-Identifier: MIT
// ***************************************************************
#include <map>
#include <unordered_map>
#include <tuple>
#include "Mst.h"
#include "BayesMetrics.h"
namespace bayesnet {
//samples is n+1xm tensor used to fit the model
Metrics::Metrics(const torch::Tensor& samples, const std::vector<std::string>& features, const std::string& className, const int classNumStates)
: samples(samples)
, features(features)
, className(className)
, features(features)
, classNumStates(classNumStates)
{
}
//samples is n+1xm std::vector used to fit the model
Metrics::Metrics(const std::vector<std::vector<int>>& vsamples, const std::vector<int>& labels, const std::vector<std::string>& features, const std::string& className, const int classNumStates)
: features(features)
: samples(torch::zeros({ static_cast<int>(vsamples.size() + 1), static_cast<int>(vsamples[0].size()) }, torch::kInt32))
, className(className)
, features(features)
, classNumStates(classNumStates)
, samples(torch::zeros({ static_cast<int>(vsamples.size() + 1), static_cast<int>(vsamples[0].size()) }, torch::kInt32))
{
for (int i = 0; i < vsamples.size(); ++i) {
samples.index_put_({ i, "..." }, torch::tensor(vsamples[i], torch::kInt32));
@@ -105,14 +108,8 @@ namespace bayesnet {
}
return matrix;
}
// To use in Python
std::vector<float> Metrics::conditionalEdgeWeights(std::vector<float>& weights_)
{
const torch::Tensor weights = torch::tensor(weights_);
auto matrix = conditionalEdge(weights);
std::vector<float> v(matrix.data_ptr<float>(), matrix.data_ptr<float>() + matrix.numel());
return v;
}
// Measured in nats (natural logarithm (log) base e)
// Elements of Information Theory, 2nd Edition, Thomas M. Cover, Joy A. Thomas p. 14
double Metrics::entropy(const torch::Tensor& feature, const torch::Tensor& weights)
{
torch::Tensor counts = feature.bincount(weights);
@@ -151,11 +148,64 @@ namespace bayesnet {
}
return entropyValue;
}
// H(Y|X,C) = sum_{x in X, c in C} p(x,c) H(Y|X=x,C=c)
double Metrics::conditionalEntropy(const torch::Tensor& firstFeature, const torch::Tensor& secondFeature, const torch::Tensor& labels, const torch::Tensor& weights)
{
// Ensure the tensors are of the same length
assert(firstFeature.size(0) == secondFeature.size(0) && firstFeature.size(0) == labels.size(0) && firstFeature.size(0) == weights.size(0));
// Convert tensors to vectors for easier processing
auto firstFeatureData = firstFeature.accessor<int, 1>();
auto secondFeatureData = secondFeature.accessor<int, 1>();
auto labelsData = labels.accessor<int, 1>();
auto weightsData = weights.accessor<double, 1>();
int numSamples = firstFeature.size(0);
// Maps for joint and marginal probabilities
std::map<std::tuple<int, int, int>, double> jointCount;
std::map<std::tuple<int, int>, double> marginalCount;
// Compute joint and marginal counts
for (int i = 0; i < numSamples; ++i) {
auto keyJoint = std::make_tuple(firstFeatureData[i], labelsData[i], secondFeatureData[i]);
auto keyMarginal = std::make_tuple(firstFeatureData[i], labelsData[i]);
jointCount[keyJoint] += weightsData[i];
marginalCount[keyMarginal] += weightsData[i];
}
// Total weight sum
double totalWeight = torch::sum(weights).item<double>();
if (totalWeight == 0)
return 0;
// Compute the conditional entropy
double conditionalEntropy = 0.0;
for (const auto& [keyJoint, jointFreq] : jointCount) {
auto [x, c, y] = keyJoint;
auto keyMarginal = std::make_tuple(x, c);
double p_xc = marginalCount[keyMarginal] / totalWeight;
double p_y_given_xc = jointFreq / marginalCount[keyMarginal];
if (p_y_given_xc > 0) {
conditionalEntropy -= (jointFreq / totalWeight) * std::log(p_y_given_xc);
}
}
return conditionalEntropy;
}
// I(X;Y) = H(Y) - H(Y|X)
double Metrics::mutualInformation(const torch::Tensor& firstFeature, const torch::Tensor& secondFeature, const torch::Tensor& weights)
{
return entropy(firstFeature, weights) - conditionalEntropy(firstFeature, secondFeature, weights);
}
// I(X;Y|C) = H(Y|C) - H(Y|X,C)
double Metrics::conditionalMutualInformation(const torch::Tensor& firstFeature, const torch::Tensor& secondFeature, const torch::Tensor& labels, const torch::Tensor& weights)
{
return std::max(conditionalEntropy(firstFeature, labels, weights) - conditionalEntropy(firstFeature, secondFeature, labels, weights), 0.0);
}
/*
Compute the maximum spanning tree considering the weights as distances
and the indices of the weights as nodes of this square matrix using

View File

@@ -18,13 +18,16 @@ namespace bayesnet {
std::vector<int> SelectKBestWeighted(const torch::Tensor& weights, bool ascending = false, unsigned k = 0);
std::vector<double> getScoresKBest() const;
double mutualInformation(const torch::Tensor& firstFeature, const torch::Tensor& secondFeature, const torch::Tensor& weights);
std::vector<float> conditionalEdgeWeights(std::vector<float>& weights); // To use in Python
double conditionalMutualInformation(const torch::Tensor& firstFeature, const torch::Tensor& secondFeature, const torch::Tensor& labels, const torch::Tensor& weights);
torch::Tensor conditionalEdge(const torch::Tensor& weights);
std::vector<std::pair<int, int>> maximumSpanningTree(const std::vector<std::string>& features, const torch::Tensor& weights, const int root);
// Measured in nats (natural logarithm (log) base e)
// Elements of Information Theory, 2nd Edition, Thomas M. Cover, Joy A. Thomas p. 14
double entropy(const torch::Tensor& feature, const torch::Tensor& weights);
double conditionalEntropy(const torch::Tensor& firstFeature, const torch::Tensor& secondFeature, const torch::Tensor& labels, const torch::Tensor& weights);
protected:
torch::Tensor samples; // n+1xm torch::Tensor used to fit the model where samples[-1] is the y std::vector
std::string className;
double entropy(const torch::Tensor& feature, const torch::Tensor& weights);
std::vector<std::string> features;
template <class T>
std::vector<std::pair<T, T>> doCombinations(const std::vector<T>& source)

View File

@@ -5,6 +5,7 @@
The hyperparameters defined in the algorithm are:
- ***bisection*** (*boolean*): If set to true allows the algorithm to add *k* models at once (as specified in the algorithm) to the ensemble. Default value: *true*.
- ***bisection_best*** (*boolean*): If set to *true*, the algorithm will take as *priorAccuracy* the best accuracy computed. If set to *false⁺ it will take the last accuracy as *priorAccuracy*. Default value: *false*.
- ***order*** (*{"asc", "desc", "rand"}*): Sets the order (ascending/descending/random) in which dataset variables will be processed to choose the parents of the *SPODEs*. Default value: *"desc"*.

View File

@@ -105,8 +105,7 @@
2. $numItemsPack \leftarrow 0$
10. If
$(Vars == \emptyset \lor tolerance>maxTolerance) \; finished \leftarrow True$
10. If $(Vars == \emptyset \lor tolerance>maxTolerance) \; finished \leftarrow True$
11. $lastAccuracy \leftarrow max(lastAccuracy, actualAccuracy)$

BIN
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@@ -1,5 +0,0 @@
filter = bayesnet/
exclude-directories = build_debug/lib/
exclude = bayesnet/utils/loguru.*
print-summary = yes
sort = uncovered-percent

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@@ -0,0 +1,90 @@
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html lang="en">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<title>LCOV - BayesNet Coverage Report - bayesnet/BaseClassifier.h - functions</title>
<link rel="stylesheet" type="text/css" href="../gcov.css">
</head>
<body>
<table width="100%" border=0 cellspacing=0 cellpadding=0>
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<tr><td class="ruler"><img src="../glass.png" width=3 height=3 alt=""></td></tr>
<tr>
<td width="100%">
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<td width="10%" class="headerValue"><a href="../index.html" target="_parent">top level</a> - <a href="index.html" target="_parent">bayesnet</a> - BaseClassifier.h<span style="font-size: 80%;"> (<a href="BaseClassifier.h.gcov.html">source</a> / functions)</span></td>
<td width="5%"></td>
<td width="5%"></td>
<td width="5%" class="headerCovTableHead">Coverage</td>
<td width="5%" class="headerCovTableHead" title="Covered + Uncovered code">Total</td>
<td width="5%" class="headerCovTableHead" title="Exercised code only">Hit</td>
</tr>
<tr>
<td class="headerItem">Test:</td>
<td class="headerValue">BayesNet Coverage Report</td>
<td></td>
<td class="headerItem">Lines:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">1</td>
<td class="headerCovTableEntry">1</td>
</tr>
<tr>
<td class="headerItem">Test Date:</td>
<td class="headerValue">2024-05-06 17:54:04</td>
<td></td>
<td class="headerItem">Functions:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">1</td>
<td class="headerCovTableEntry">1</td>
</tr>
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<td class="headerValueLeg"> Lines:
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</td>
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</table>
<center>
<table cellpadding=1 cellspacing=1 border=0>
<tr><td><br></td></tr>
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</tr>
<tr>
<td class="coverFn"><a href="BaseClassifier.h.gcov.html#L19">bayesnet::BaseClassifier::~BaseClassifier()</a></td>
<td class="coverFnHi">1680</td>
</tr>
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@@ -0,0 +1,90 @@
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<head>
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
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<link rel="stylesheet" type="text/css" href="../gcov.css">
</head>
<body>
<table width="100%" border=0 cellspacing=0 cellpadding=0>
<tr><td class="title">LCOV - code coverage report</td></tr>
<tr><td class="ruler"><img src="../glass.png" width=3 height=3 alt=""></td></tr>
<tr>
<td width="100%">
<table cellpadding=1 border=0 width="100%">
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<td width="10%" class="headerItem">Current view:</td>
<td width="10%" class="headerValue"><a href="../index.html" target="_parent">top level</a> - <a href="index.html" target="_parent">bayesnet</a> - BaseClassifier.h<span style="font-size: 80%;"> (<a href="BaseClassifier.h.gcov.html">source</a> / functions)</span></td>
<td width="5%"></td>
<td width="5%"></td>
<td width="5%" class="headerCovTableHead">Coverage</td>
<td width="5%" class="headerCovTableHead" title="Covered + Uncovered code">Total</td>
<td width="5%" class="headerCovTableHead" title="Exercised code only">Hit</td>
</tr>
<tr>
<td class="headerItem">Test:</td>
<td class="headerValue">BayesNet Coverage Report</td>
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<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">1</td>
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</tr>
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<td class="headerItem">Test Date:</td>
<td class="headerValue">2024-05-06 17:54:04</td>
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<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">1</td>
<td class="headerCovTableEntry">1</td>
</tr>
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<td class="headerValueLeg"> Lines:
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</td>
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<td class="coverFnHi">1680</td>
</tr>
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<br>
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@@ -0,0 +1,19 @@
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<link rel="stylesheet" type="text/css" href="../gcov.css">
</head>
<body>
<table width="100%" border=0 cellspacing=0 cellpadding=0>
<tr><td class="title">LCOV - code coverage report</td></tr>
<tr><td class="ruler"><img src="../glass.png" width=3 height=3 alt=""></td></tr>
<tr>
<td width="100%">
<table cellpadding=1 border=0 width="100%">
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<td width="10%" class="headerItem">Current view:</td>
<td width="10%" class="headerValue"><a href="../index.html" target="_parent">top level</a> - <a href="index.html" target="_parent">bayesnet</a> - BaseClassifier.h<span style="font-size: 80%;"> (source / <a href="BaseClassifier.h.func-c.html">functions</a>)</span></td>
<td width="5%"></td>
<td width="5%"></td>
<td width="5%" class="headerCovTableHead">Coverage</td>
<td width="5%" class="headerCovTableHead" title="Covered + Uncovered code">Total</td>
<td width="5%" class="headerCovTableHead" title="Exercised code only">Hit</td>
</tr>
<tr>
<td class="headerItem">Test:</td>
<td class="headerValue">BayesNet Coverage Report</td>
<td></td>
<td class="headerItem">Lines:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">1</td>
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<td class="headerValue">2024-05-06 17:54:04</td>
<td></td>
<td class="headerItem">Functions:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">1</td>
<td class="headerCovTableEntry">1</td>
</tr>
<tr>
<td class="headerItem">Legend:</td>
<td class="headerValueLeg"> Lines:
<span class="coverLegendCov">hit</span>
<span class="coverLegendNoCov">not hit</span>
</td>
<td></td>
</tr>
<tr><td><img src="../glass.png" width=3 height=3 alt=""></td></tr>
</table>
</td>
</tr>
<tr><td class="ruler"><img src="../glass.png" width=3 height=3 alt=""></td></tr>
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<td>
<pre class="sourceHeading"> Line data Source code</pre>
<pre class="source">
<span id="L1"><span class="lineNum"> 1</span> : // ***************************************************************</span>
<span id="L2"><span class="lineNum"> 2</span> : // SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez</span>
<span id="L3"><span class="lineNum"> 3</span> : // SPDX-FileType: SOURCE</span>
<span id="L4"><span class="lineNum"> 4</span> : // SPDX-License-Identifier: MIT</span>
<span id="L5"><span class="lineNum"> 5</span> : // ***************************************************************</span>
<span id="L6"><span class="lineNum"> 6</span> : </span>
<span id="L7"><span class="lineNum"> 7</span> : #pragma once</span>
<span id="L8"><span class="lineNum"> 8</span> : #include &lt;vector&gt;</span>
<span id="L9"><span class="lineNum"> 9</span> : #include &lt;torch/torch.h&gt;</span>
<span id="L10"><span class="lineNum"> 10</span> : #include &lt;nlohmann/json.hpp&gt;</span>
<span id="L11"><span class="lineNum"> 11</span> : namespace bayesnet {</span>
<span id="L12"><span class="lineNum"> 12</span> : enum status_t { NORMAL, WARNING, ERROR };</span>
<span id="L13"><span class="lineNum"> 13</span> : class BaseClassifier {</span>
<span id="L14"><span class="lineNum"> 14</span> : public:</span>
<span id="L15"><span class="lineNum"> 15</span> : // X is nxm std::vector, y is nx1 std::vector</span>
<span id="L16"><span class="lineNum"> 16</span> : virtual BaseClassifier&amp; fit(std::vector&lt;std::vector&lt;int&gt;&gt;&amp; X, std::vector&lt;int&gt;&amp; y, const std::vector&lt;std::string&gt;&amp; features, const std::string&amp; className, std::map&lt;std::string, std::vector&lt;int&gt;&gt;&amp; states) = 0;</span>
<span id="L17"><span class="lineNum"> 17</span> : // X is nxm tensor, y is nx1 tensor</span>
<span id="L18"><span class="lineNum"> 18</span> : virtual BaseClassifier&amp; fit(torch::Tensor&amp; X, torch::Tensor&amp; y, const std::vector&lt;std::string&gt;&amp; features, const std::string&amp; className, std::map&lt;std::string, std::vector&lt;int&gt;&gt;&amp; states) = 0;</span>
<span id="L19"><span class="lineNum"> 19</span> : virtual BaseClassifier&amp; fit(torch::Tensor&amp; dataset, const std::vector&lt;std::string&gt;&amp; features, const std::string&amp; className, std::map&lt;std::string, std::vector&lt;int&gt;&gt;&amp; states) = 0;</span>
<span id="L20"><span class="lineNum"> 20</span> : virtual BaseClassifier&amp; fit(torch::Tensor&amp; dataset, const std::vector&lt;std::string&gt;&amp; features, const std::string&amp; className, std::map&lt;std::string, std::vector&lt;int&gt;&gt;&amp; states, const torch::Tensor&amp; weights) = 0;</span>
<span id="L21"><span class="lineNum"> 21</span> <span class="tlaGNC tlaBgGNC"> 1680 : virtual ~BaseClassifier() = default;</span></span>
<span id="L22"><span class="lineNum"> 22</span> : torch::Tensor virtual predict(torch::Tensor&amp; X) = 0;</span>
<span id="L23"><span class="lineNum"> 23</span> : std::vector&lt;int&gt; virtual predict(std::vector&lt;std::vector&lt;int &gt;&gt;&amp; X) = 0;</span>
<span id="L24"><span class="lineNum"> 24</span> : torch::Tensor virtual predict_proba(torch::Tensor&amp; X) = 0;</span>
<span id="L25"><span class="lineNum"> 25</span> : std::vector&lt;std::vector&lt;double&gt;&gt; virtual predict_proba(std::vector&lt;std::vector&lt;int &gt;&gt;&amp; X) = 0;</span>
<span id="L26"><span class="lineNum"> 26</span> : status_t virtual getStatus() const = 0;</span>
<span id="L27"><span class="lineNum"> 27</span> : float virtual score(std::vector&lt;std::vector&lt;int&gt;&gt;&amp; X, std::vector&lt;int&gt;&amp; y) = 0;</span>
<span id="L28"><span class="lineNum"> 28</span> : float virtual score(torch::Tensor&amp; X, torch::Tensor&amp; y) = 0;</span>
<span id="L29"><span class="lineNum"> 29</span> : int virtual getNumberOfNodes()const = 0;</span>
<span id="L30"><span class="lineNum"> 30</span> : int virtual getNumberOfEdges()const = 0;</span>
<span id="L31"><span class="lineNum"> 31</span> : int virtual getNumberOfStates() const = 0;</span>
<span id="L32"><span class="lineNum"> 32</span> : int virtual getClassNumStates() const = 0;</span>
<span id="L33"><span class="lineNum"> 33</span> : std::vector&lt;std::string&gt; virtual show() const = 0;</span>
<span id="L34"><span class="lineNum"> 34</span> : std::vector&lt;std::string&gt; virtual graph(const std::string&amp; title = &quot;&quot;) const = 0;</span>
<span id="L35"><span class="lineNum"> 35</span> : virtual std::string getVersion() = 0;</span>
<span id="L36"><span class="lineNum"> 36</span> : std::vector&lt;std::string&gt; virtual topological_order() = 0;</span>
<span id="L37"><span class="lineNum"> 37</span> : std::vector&lt;std::string&gt; virtual getNotes() const = 0;</span>
<span id="L38"><span class="lineNum"> 38</span> : std::string virtual dump_cpt()const = 0;</span>
<span id="L39"><span class="lineNum"> 39</span> : virtual void setHyperparameters(const nlohmann::json&amp; hyperparameters) = 0;</span>
<span id="L40"><span class="lineNum"> 40</span> : std::vector&lt;std::string&gt;&amp; getValidHyperparameters() { return validHyperparameters; }</span>
<span id="L41"><span class="lineNum"> 41</span> : protected:</span>
<span id="L42"><span class="lineNum"> 42</span> : virtual void trainModel(const torch::Tensor&amp; weights) = 0;</span>
<span id="L43"><span class="lineNum"> 43</span> : std::vector&lt;std::string&gt; validHyperparameters;</span>
<span id="L44"><span class="lineNum"> 44</span> : };</span>
<span id="L45"><span class="lineNum"> 45</span> : }</span>
</pre>
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<tr><td class="title">LCOV - code coverage report</td></tr>
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<table cellpadding=1 border=0 width="100%">
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<td width="10%" class="headerItem">Current view:</td>
<td width="10%" class="headerValue"><a href="../../index.html" target="_parent">top level</a> - <a href="index.html" target="_parent">bayesnet/classifiers</a> - Classifier.cc<span style="font-size: 80%;"> (<a href="Classifier.cc.gcov.html">source</a> / functions)</span></td>
<td width="5%"></td>
<td width="5%"></td>
<td width="5%" class="headerCovTableHead">Coverage</td>
<td width="5%" class="headerCovTableHead" title="Covered + Uncovered code">Total</td>
<td width="5%" class="headerCovTableHead" title="Exercised code only">Hit</td>
</tr>
<tr>
<td class="headerItem">Test:</td>
<td class="headerValue">BayesNet Coverage Report</td>
<td></td>
<td class="headerItem">Lines:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">126</td>
<td class="headerCovTableEntry">126</td>
</tr>
<tr>
<td class="headerItem">Test Date:</td>
<td class="headerValue">2024-05-06 17:54:04</td>
<td></td>
<td class="headerItem">Functions:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">24</td>
<td class="headerCovTableEntry">24</td>
</tr>
<tr>
<td class="headerItem">Legend:</td>
<td class="headerValueLeg"> Lines:
<span class="coverLegendCov">hit</span>
<span class="coverLegendNoCov">not hit</span>
</td>
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<td class="tableHead">Function Name <span title="Click to sort table by function name" class="tableHeadSort"><a href="Classifier.cc.func.html"><img src="../../updown.png" width=10 height=14 alt="Sort by function name" title="Click to sort table by function name" border=0></a></span></td>
<td class="tableHead">Hit count <span title="Click to sort table by function hit count" class="tableHeadSort"><img src="../../glass.png" width=10 height=14 alt="Sort by function hit count" title="Click to sort table by function hit count" border=0></span></td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L182">bayesnet::Classifier::dump_cpt[abi:cxx11]() const</a></td>
<td class="coverFnHi">4</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L178">bayesnet::Classifier::topological_order[abi:cxx11]()</a></td>
<td class="coverFnHi">4</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L101">bayesnet::Classifier::predict(std::vector&lt;std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::allocator&lt;std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt;&amp;)</a></td>
<td class="coverFnHi">16</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L142">bayesnet::Classifier::score(std::vector&lt;std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::allocator&lt;std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt;&amp;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;&amp;)</a></td>
<td class="coverFnHi">16</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L170">bayesnet::Classifier::getNumberOfStates() const</a></td>
<td class="coverFnHi">24</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L149">bayesnet::Classifier::show[abi:cxx11]() const</a></td>
<td class="coverFnHi">24</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L186">bayesnet::Classifier::setHyperparameters(nlohmann::json_abi_v3_11_3::basic_json&lt;std::map, std::vector, std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, bool, long, unsigned long, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector&lt;unsigned char, std::allocator&lt;unsigned char&gt; &gt;, void&gt; const&amp;)</a></td>
<td class="coverFnHi">92</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L137">bayesnet::Classifier::score(at::Tensor&amp;, at::Tensor&amp;)</a></td>
<td class="coverFnHi">112</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L47">bayesnet::Classifier::fit(at::Tensor&amp;, at::Tensor&amp;, std::vector&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::allocator&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt; &gt; const&amp;, std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;, std::map&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::less&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt;, std::allocator&lt;std::pair&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const, std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt; &gt;&amp;)</a></td>
<td class="coverFnHi">128</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L55">bayesnet::Classifier::fit(std::vector&lt;std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::allocator&lt;std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt;&amp;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;&amp;, std::vector&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::allocator&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt; &gt; const&amp;, std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;, std::map&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::less&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt;, std::allocator&lt;std::pair&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const, std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt; &gt;&amp;)</a></td>
<td class="coverFnHi">136</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L166">bayesnet::Classifier::getNumberOfEdges() const</a></td>
<td class="coverFnHi">332</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L161">bayesnet::Classifier::getNumberOfNodes() const</a></td>
<td class="coverFnHi">332</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L28">bayesnet::Classifier::buildDataset(at::Tensor&amp;)</a></td>
<td class="coverFnHi">340</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L174">bayesnet::Classifier::getClassNumStates() const</a></td>
<td class="coverFnHi">348</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L122">bayesnet::Classifier::predict_proba(std::vector&lt;std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::allocator&lt;std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt;&amp;)</a></td>
<td class="coverFnHi">548</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L72">bayesnet::Classifier::fit(at::Tensor&amp;, std::vector&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::allocator&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt; &gt; const&amp;, std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;, std::map&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::less&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt;, std::allocator&lt;std::pair&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const, std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt; &gt;&amp;, at::Tensor const&amp;)</a></td>
<td class="coverFnHi">660</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L66">bayesnet::Classifier::fit(at::Tensor&amp;, std::vector&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::allocator&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt; &gt; const&amp;, std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;, std::map&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::less&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt;, std::allocator&lt;std::pair&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const, std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt; &gt;&amp;)</a></td>
<td class="coverFnHi">852</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L115">bayesnet::Classifier::predict_proba(at::Tensor&amp;)</a></td>
<td class="coverFnHi">1484</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L153">bayesnet::Classifier::addNodes()</a></td>
<td class="coverFnHi">1576</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L42">bayesnet::Classifier::trainModel(at::Tensor const&amp;)</a></td>
<td class="coverFnHi">1576</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L12">bayesnet::Classifier::build(std::vector&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::allocator&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt; &gt; const&amp;, std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;, std::map&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::less&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt;, std::allocator&lt;std::pair&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const, std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt; &gt;&amp;, at::Tensor const&amp;)</a></td>
<td class="coverFnHi">1760</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L77">bayesnet::Classifier::checkFitParameters()</a></td>
<td class="coverFnHi">1760</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L94">bayesnet::Classifier::predict(at::Tensor&amp;)</a></td>
<td class="coverFnHi">1844</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L10">bayesnet::Classifier::Classifier(bayesnet::Network)</a></td>
<td class="coverFnHi">2240</td>
</tr>
</table>
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<title>LCOV - BayesNet Coverage Report - bayesnet/classifiers/Classifier.cc - functions</title>
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<td width="10%" class="headerItem">Current view:</td>
<td width="10%" class="headerValue"><a href="../../index.html" target="_parent">top level</a> - <a href="index.html" target="_parent">bayesnet/classifiers</a> - Classifier.cc<span style="font-size: 80%;"> (<a href="Classifier.cc.gcov.html">source</a> / functions)</span></td>
<td width="5%"></td>
<td width="5%"></td>
<td width="5%" class="headerCovTableHead">Coverage</td>
<td width="5%" class="headerCovTableHead" title="Covered + Uncovered code">Total</td>
<td width="5%" class="headerCovTableHead" title="Exercised code only">Hit</td>
</tr>
<tr>
<td class="headerItem">Test:</td>
<td class="headerValue">BayesNet Coverage Report</td>
<td></td>
<td class="headerItem">Lines:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">126</td>
<td class="headerCovTableEntry">126</td>
</tr>
<tr>
<td class="headerItem">Test Date:</td>
<td class="headerValue">2024-05-06 17:54:04</td>
<td></td>
<td class="headerItem">Functions:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">24</td>
<td class="headerCovTableEntry">24</td>
</tr>
<tr>
<td class="headerItem">Legend:</td>
<td class="headerValueLeg"> Lines:
<span class="coverLegendCov">hit</span>
<span class="coverLegendNoCov">not hit</span>
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<td class="tableHead">Function Name <span title="Click to sort table by function name" class="tableHeadSort"><img src="../../glass.png" width=10 height=14 alt="Sort by function name" title="Click to sort table by function name" border=0></span></td>
<td class="tableHead">Hit count <span title="Click to sort table by function hit count" class="tableHeadSort"><a href="Classifier.cc.func-c.html"><img src="../../updown.png" width=10 height=14 alt="Sort by function hit count" title="Click to sort table by function hit count" border=0></a></span></td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L10">bayesnet::Classifier::Classifier(bayesnet::Network)</a></td>
<td class="coverFnHi">2240</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L153">bayesnet::Classifier::addNodes()</a></td>
<td class="coverFnHi">1576</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L12">bayesnet::Classifier::build(std::vector&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::allocator&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt; &gt; const&amp;, std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;, std::map&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::less&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt;, std::allocator&lt;std::pair&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const, std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt; &gt;&amp;, at::Tensor const&amp;)</a></td>
<td class="coverFnHi">1760</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L28">bayesnet::Classifier::buildDataset(at::Tensor&amp;)</a></td>
<td class="coverFnHi">340</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L77">bayesnet::Classifier::checkFitParameters()</a></td>
<td class="coverFnHi">1760</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L182">bayesnet::Classifier::dump_cpt[abi:cxx11]() const</a></td>
<td class="coverFnHi">4</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L47">bayesnet::Classifier::fit(at::Tensor&amp;, at::Tensor&amp;, std::vector&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::allocator&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt; &gt; const&amp;, std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;, std::map&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::less&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt;, std::allocator&lt;std::pair&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const, std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt; &gt;&amp;)</a></td>
<td class="coverFnHi">128</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L66">bayesnet::Classifier::fit(at::Tensor&amp;, std::vector&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::allocator&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt; &gt; const&amp;, std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;, std::map&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::less&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt;, std::allocator&lt;std::pair&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const, std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt; &gt;&amp;)</a></td>
<td class="coverFnHi">852</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L72">bayesnet::Classifier::fit(at::Tensor&amp;, std::vector&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::allocator&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt; &gt; const&amp;, std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;, std::map&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::less&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt;, std::allocator&lt;std::pair&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const, std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt; &gt;&amp;, at::Tensor const&amp;)</a></td>
<td class="coverFnHi">660</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L55">bayesnet::Classifier::fit(std::vector&lt;std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::allocator&lt;std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt;&amp;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;&amp;, std::vector&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::allocator&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt; &gt; const&amp;, std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;, std::map&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::less&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt;, std::allocator&lt;std::pair&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const, std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt; &gt;&amp;)</a></td>
<td class="coverFnHi">136</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L174">bayesnet::Classifier::getClassNumStates() const</a></td>
<td class="coverFnHi">348</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L166">bayesnet::Classifier::getNumberOfEdges() const</a></td>
<td class="coverFnHi">332</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L161">bayesnet::Classifier::getNumberOfNodes() const</a></td>
<td class="coverFnHi">332</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L170">bayesnet::Classifier::getNumberOfStates() const</a></td>
<td class="coverFnHi">24</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L94">bayesnet::Classifier::predict(at::Tensor&amp;)</a></td>
<td class="coverFnHi">1844</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L101">bayesnet::Classifier::predict(std::vector&lt;std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::allocator&lt;std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt;&amp;)</a></td>
<td class="coverFnHi">16</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L115">bayesnet::Classifier::predict_proba(at::Tensor&amp;)</a></td>
<td class="coverFnHi">1484</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L122">bayesnet::Classifier::predict_proba(std::vector&lt;std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::allocator&lt;std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt;&amp;)</a></td>
<td class="coverFnHi">548</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L137">bayesnet::Classifier::score(at::Tensor&amp;, at::Tensor&amp;)</a></td>
<td class="coverFnHi">112</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L142">bayesnet::Classifier::score(std::vector&lt;std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::allocator&lt;std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt;&amp;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;&amp;)</a></td>
<td class="coverFnHi">16</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L186">bayesnet::Classifier::setHyperparameters(nlohmann::json_abi_v3_11_3::basic_json&lt;std::map, std::vector, std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, bool, long, unsigned long, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector&lt;unsigned char, std::allocator&lt;unsigned char&gt; &gt;, void&gt; const&amp;)</a></td>
<td class="coverFnHi">92</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L149">bayesnet::Classifier::show[abi:cxx11]() const</a></td>
<td class="coverFnHi">24</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L178">bayesnet::Classifier::topological_order[abi:cxx11]()</a></td>
<td class="coverFnHi">4</td>
</tr>
<tr>
<td class="coverFn"><a href="Classifier.cc.gcov.html#L42">bayesnet::Classifier::trainModel(at::Tensor const&amp;)</a></td>
<td class="coverFnHi">1576</td>
</tr>
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<td width="10%" class="headerItem">Current view:</td>
<td width="10%" class="headerValue"><a href="../../index.html" target="_parent">top level</a> - <a href="index.html" target="_parent">bayesnet/classifiers</a> - Classifier.cc<span style="font-size: 80%;"> (source / <a href="Classifier.cc.func-c.html">functions</a>)</span></td>
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<td width="5%"></td>
<td width="5%" class="headerCovTableHead">Coverage</td>
<td width="5%" class="headerCovTableHead" title="Covered + Uncovered code">Total</td>
<td width="5%" class="headerCovTableHead" title="Exercised code only">Hit</td>
</tr>
<tr>
<td class="headerItem">Test:</td>
<td class="headerValue">BayesNet Coverage Report</td>
<td></td>
<td class="headerItem">Lines:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">126</td>
<td class="headerCovTableEntry">126</td>
</tr>
<tr>
<td class="headerItem">Test Date:</td>
<td class="headerValue">2024-05-06 17:54:04</td>
<td></td>
<td class="headerItem">Functions:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">24</td>
<td class="headerCovTableEntry">24</td>
</tr>
<tr>
<td class="headerItem">Legend:</td>
<td class="headerValueLeg"> Lines:
<span class="coverLegendCov">hit</span>
<span class="coverLegendNoCov">not hit</span>
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<pre class="sourceHeading"> Line data Source code</pre>
<pre class="source">
<span id="L1"><span class="lineNum"> 1</span> : // ***************************************************************</span>
<span id="L2"><span class="lineNum"> 2</span> : // SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez</span>
<span id="L3"><span class="lineNum"> 3</span> : // SPDX-FileType: SOURCE</span>
<span id="L4"><span class="lineNum"> 4</span> : // SPDX-License-Identifier: MIT</span>
<span id="L5"><span class="lineNum"> 5</span> : // ***************************************************************</span>
<span id="L6"><span class="lineNum"> 6</span> : </span>
<span id="L7"><span class="lineNum"> 7</span> : #include &lt;sstream&gt;</span>
<span id="L8"><span class="lineNum"> 8</span> : #include &quot;bayesnet/utils/bayesnetUtils.h&quot;</span>
<span id="L9"><span class="lineNum"> 9</span> : #include &quot;Classifier.h&quot;</span>
<span id="L10"><span class="lineNum"> 10</span> : </span>
<span id="L11"><span class="lineNum"> 11</span> : namespace bayesnet {</span>
<span id="L12"><span class="lineNum"> 12</span> <span class="tlaGNC tlaBgGNC"> 2240 : Classifier::Classifier(Network model) : model(model), m(0), n(0), metrics(Metrics()), fitted(false) {}</span></span>
<span id="L13"><span class="lineNum"> 13</span> : const std::string CLASSIFIER_NOT_FITTED = &quot;Classifier has not been fitted&quot;;</span>
<span id="L14"><span class="lineNum"> 14</span> <span class="tlaGNC"> 1760 : Classifier&amp; Classifier::build(const std::vector&lt;std::string&gt;&amp; features, const std::string&amp; className, std::map&lt;std::string, std::vector&lt;int&gt;&gt;&amp; states, const torch::Tensor&amp; weights)</span></span>
<span id="L15"><span class="lineNum"> 15</span> : {</span>
<span id="L16"><span class="lineNum"> 16</span> <span class="tlaGNC"> 1760 : this-&gt;features = features;</span></span>
<span id="L17"><span class="lineNum"> 17</span> <span class="tlaGNC"> 1760 : this-&gt;className = className;</span></span>
<span id="L18"><span class="lineNum"> 18</span> <span class="tlaGNC"> 1760 : this-&gt;states = states;</span></span>
<span id="L19"><span class="lineNum"> 19</span> <span class="tlaGNC"> 1760 : m = dataset.size(1);</span></span>
<span id="L20"><span class="lineNum"> 20</span> <span class="tlaGNC"> 1760 : n = features.size();</span></span>
<span id="L21"><span class="lineNum"> 21</span> <span class="tlaGNC"> 1760 : checkFitParameters();</span></span>
<span id="L22"><span class="lineNum"> 22</span> <span class="tlaGNC"> 1728 : auto n_classes = states.at(className).size();</span></span>
<span id="L23"><span class="lineNum"> 23</span> <span class="tlaGNC"> 1728 : metrics = Metrics(dataset, features, className, n_classes);</span></span>
<span id="L24"><span class="lineNum"> 24</span> <span class="tlaGNC"> 1728 : model.initialize();</span></span>
<span id="L25"><span class="lineNum"> 25</span> <span class="tlaGNC"> 1728 : buildModel(weights);</span></span>
<span id="L26"><span class="lineNum"> 26</span> <span class="tlaGNC"> 1728 : trainModel(weights);</span></span>
<span id="L27"><span class="lineNum"> 27</span> <span class="tlaGNC"> 1712 : fitted = true;</span></span>
<span id="L28"><span class="lineNum"> 28</span> <span class="tlaGNC"> 1712 : return *this;</span></span>
<span id="L29"><span class="lineNum"> 29</span> : }</span>
<span id="L30"><span class="lineNum"> 30</span> <span class="tlaGNC"> 340 : void Classifier::buildDataset(torch::Tensor&amp; ytmp)</span></span>
<span id="L31"><span class="lineNum"> 31</span> : {</span>
<span id="L32"><span class="lineNum"> 32</span> : try {</span>
<span id="L33"><span class="lineNum"> 33</span> <span class="tlaGNC"> 340 : auto yresized = torch::transpose(ytmp.view({ ytmp.size(0), 1 }), 0, 1);</span></span>
<span id="L34"><span class="lineNum"> 34</span> <span class="tlaGNC"> 1052 : dataset = torch::cat({ dataset, yresized }, 0);</span></span>
<span id="L35"><span class="lineNum"> 35</span> <span class="tlaGNC"> 340 : }</span></span>
<span id="L36"><span class="lineNum"> 36</span> <span class="tlaGNC"> 16 : catch (const std::exception&amp; e) {</span></span>
<span id="L37"><span class="lineNum"> 37</span> <span class="tlaGNC"> 16 : std::stringstream oss;</span></span>
<span id="L38"><span class="lineNum"> 38</span> <span class="tlaGNC"> 16 : oss &lt;&lt; &quot;* Error in X and y dimensions *\n&quot;;</span></span>
<span id="L39"><span class="lineNum"> 39</span> <span class="tlaGNC"> 16 : oss &lt;&lt; &quot;X dimensions: &quot; &lt;&lt; dataset.sizes() &lt;&lt; &quot;\n&quot;;</span></span>
<span id="L40"><span class="lineNum"> 40</span> <span class="tlaGNC"> 16 : oss &lt;&lt; &quot;y dimensions: &quot; &lt;&lt; ytmp.sizes();</span></span>
<span id="L41"><span class="lineNum"> 41</span> <span class="tlaGNC"> 16 : throw std::runtime_error(oss.str());</span></span>
<span id="L42"><span class="lineNum"> 42</span> <span class="tlaGNC"> 32 : }</span></span>
<span id="L43"><span class="lineNum"> 43</span> <span class="tlaGNC"> 680 : }</span></span>
<span id="L44"><span class="lineNum"> 44</span> <span class="tlaGNC"> 1576 : void Classifier::trainModel(const torch::Tensor&amp; weights)</span></span>
<span id="L45"><span class="lineNum"> 45</span> : {</span>
<span id="L46"><span class="lineNum"> 46</span> <span class="tlaGNC"> 1576 : model.fit(dataset, weights, features, className, states);</span></span>
<span id="L47"><span class="lineNum"> 47</span> <span class="tlaGNC"> 1576 : }</span></span>
<span id="L48"><span class="lineNum"> 48</span> : // X is nxm where n is the number of features and m the number of samples</span>
<span id="L49"><span class="lineNum"> 49</span> <span class="tlaGNC"> 128 : Classifier&amp; Classifier::fit(torch::Tensor&amp; X, torch::Tensor&amp; y, const std::vector&lt;std::string&gt;&amp; features, const std::string&amp; className, std::map&lt;std::string, std::vector&lt;int&gt;&gt;&amp; states)</span></span>
<span id="L50"><span class="lineNum"> 50</span> : {</span>
<span id="L51"><span class="lineNum"> 51</span> <span class="tlaGNC"> 128 : dataset = X;</span></span>
<span id="L52"><span class="lineNum"> 52</span> <span class="tlaGNC"> 128 : buildDataset(y);</span></span>
<span id="L53"><span class="lineNum"> 53</span> <span class="tlaGNC"> 120 : const torch::Tensor weights = torch::full({ dataset.size(1) }, 1.0 / dataset.size(1), torch::kDouble);</span></span>
<span id="L54"><span class="lineNum"> 54</span> <span class="tlaGNC"> 208 : return build(features, className, states, weights);</span></span>
<span id="L55"><span class="lineNum"> 55</span> <span class="tlaGNC"> 120 : }</span></span>
<span id="L56"><span class="lineNum"> 56</span> : // X is nxm where n is the number of features and m the number of samples</span>
<span id="L57"><span class="lineNum"> 57</span> <span class="tlaGNC"> 136 : Classifier&amp; Classifier::fit(std::vector&lt;std::vector&lt;int&gt;&gt;&amp; X, std::vector&lt;int&gt;&amp; y, const std::vector&lt;std::string&gt;&amp; features, const std::string&amp; className, std::map&lt;std::string, std::vector&lt;int&gt;&gt;&amp; states)</span></span>
<span id="L58"><span class="lineNum"> 58</span> : {</span>
<span id="L59"><span class="lineNum"> 59</span> <span class="tlaGNC"> 136 : dataset = torch::zeros({ static_cast&lt;int&gt;(X.size()), static_cast&lt;int&gt;(X[0].size()) }, torch::kInt32);</span></span>
<span id="L60"><span class="lineNum"> 60</span> <span class="tlaGNC"> 976 : for (int i = 0; i &lt; X.size(); ++i) {</span></span>
<span id="L61"><span class="lineNum"> 61</span> <span class="tlaGNC"> 3360 : dataset.index_put_({ i, &quot;...&quot; }, torch::tensor(X[i], torch::kInt32));</span></span>
<span id="L62"><span class="lineNum"> 62</span> : }</span>
<span id="L63"><span class="lineNum"> 63</span> <span class="tlaGNC"> 136 : auto ytmp = torch::tensor(y, torch::kInt32);</span></span>
<span id="L64"><span class="lineNum"> 64</span> <span class="tlaGNC"> 136 : buildDataset(ytmp);</span></span>
<span id="L65"><span class="lineNum"> 65</span> <span class="tlaGNC"> 128 : const torch::Tensor weights = torch::full({ dataset.size(1) }, 1.0 / dataset.size(1), torch::kDouble);</span></span>
<span id="L66"><span class="lineNum"> 66</span> <span class="tlaGNC"> 240 : return build(features, className, states, weights);</span></span>
<span id="L67"><span class="lineNum"> 67</span> <span class="tlaGNC"> 992 : }</span></span>
<span id="L68"><span class="lineNum"> 68</span> <span class="tlaGNC"> 852 : Classifier&amp; Classifier::fit(torch::Tensor&amp; dataset, const std::vector&lt;std::string&gt;&amp; features, const std::string&amp; className, std::map&lt;std::string, std::vector&lt;int&gt;&gt;&amp; states)</span></span>
<span id="L69"><span class="lineNum"> 69</span> : {</span>
<span id="L70"><span class="lineNum"> 70</span> <span class="tlaGNC"> 852 : this-&gt;dataset = dataset;</span></span>
<span id="L71"><span class="lineNum"> 71</span> <span class="tlaGNC"> 852 : const torch::Tensor weights = torch::full({ dataset.size(1) }, 1.0 / dataset.size(1), torch::kDouble);</span></span>
<span id="L72"><span class="lineNum"> 72</span> <span class="tlaGNC"> 1704 : return build(features, className, states, weights);</span></span>
<span id="L73"><span class="lineNum"> 73</span> <span class="tlaGNC"> 852 : }</span></span>
<span id="L74"><span class="lineNum"> 74</span> <span class="tlaGNC"> 660 : Classifier&amp; Classifier::fit(torch::Tensor&amp; dataset, const std::vector&lt;std::string&gt;&amp; features, const std::string&amp; className, std::map&lt;std::string, std::vector&lt;int&gt;&gt;&amp; states, const torch::Tensor&amp; weights)</span></span>
<span id="L75"><span class="lineNum"> 75</span> : {</span>
<span id="L76"><span class="lineNum"> 76</span> <span class="tlaGNC"> 660 : this-&gt;dataset = dataset;</span></span>
<span id="L77"><span class="lineNum"> 77</span> <span class="tlaGNC"> 660 : return build(features, className, states, weights);</span></span>
<span id="L78"><span class="lineNum"> 78</span> : }</span>
<span id="L79"><span class="lineNum"> 79</span> <span class="tlaGNC"> 1760 : void Classifier::checkFitParameters()</span></span>
<span id="L80"><span class="lineNum"> 80</span> : {</span>
<span id="L81"><span class="lineNum"> 81</span> <span class="tlaGNC"> 1760 : if (torch::is_floating_point(dataset)) {</span></span>
<span id="L82"><span class="lineNum"> 82</span> <span class="tlaGNC"> 8 : throw std::invalid_argument(&quot;dataset (X, y) must be of type Integer&quot;);</span></span>
<span id="L83"><span class="lineNum"> 83</span> : }</span>
<span id="L84"><span class="lineNum"> 84</span> <span class="tlaGNC"> 1752 : if (dataset.size(0) - 1 != features.size()) {</span></span>
<span id="L85"><span class="lineNum"> 85</span> <span class="tlaGNC"> 8 : throw std::invalid_argument(&quot;Classifier: X &quot; + std::to_string(dataset.size(0) - 1) + &quot; and features &quot; + std::to_string(features.size()) + &quot; must have the same number of features&quot;);</span></span>
<span id="L86"><span class="lineNum"> 86</span> : }</span>
<span id="L87"><span class="lineNum"> 87</span> <span class="tlaGNC"> 1744 : if (states.find(className) == states.end()) {</span></span>
<span id="L88"><span class="lineNum"> 88</span> <span class="tlaGNC"> 8 : throw std::invalid_argument(&quot;class name not found in states&quot;);</span></span>
<span id="L89"><span class="lineNum"> 89</span> : }</span>
<span id="L90"><span class="lineNum"> 90</span> <span class="tlaGNC"> 32996 : for (auto feature : features) {</span></span>
<span id="L91"><span class="lineNum"> 91</span> <span class="tlaGNC"> 31268 : if (states.find(feature) == states.end()) {</span></span>
<span id="L92"><span class="lineNum"> 92</span> <span class="tlaGNC"> 8 : throw std::invalid_argument(&quot;feature [&quot; + feature + &quot;] not found in states&quot;);</span></span>
<span id="L93"><span class="lineNum"> 93</span> : }</span>
<span id="L94"><span class="lineNum"> 94</span> <span class="tlaGNC"> 31268 : }</span></span>
<span id="L95"><span class="lineNum"> 95</span> <span class="tlaGNC"> 1728 : }</span></span>
<span id="L96"><span class="lineNum"> 96</span> <span class="tlaGNC"> 1844 : torch::Tensor Classifier::predict(torch::Tensor&amp; X)</span></span>
<span id="L97"><span class="lineNum"> 97</span> : {</span>
<span id="L98"><span class="lineNum"> 98</span> <span class="tlaGNC"> 1844 : if (!fitted) {</span></span>
<span id="L99"><span class="lineNum"> 99</span> <span class="tlaGNC"> 16 : throw std::logic_error(CLASSIFIER_NOT_FITTED);</span></span>
<span id="L100"><span class="lineNum"> 100</span> : }</span>
<span id="L101"><span class="lineNum"> 101</span> <span class="tlaGNC"> 1828 : return model.predict(X);</span></span>
<span id="L102"><span class="lineNum"> 102</span> : }</span>
<span id="L103"><span class="lineNum"> 103</span> <span class="tlaGNC"> 16 : std::vector&lt;int&gt; Classifier::predict(std::vector&lt;std::vector&lt;int&gt;&gt;&amp; X)</span></span>
<span id="L104"><span class="lineNum"> 104</span> : {</span>
<span id="L105"><span class="lineNum"> 105</span> <span class="tlaGNC"> 16 : if (!fitted) {</span></span>
<span id="L106"><span class="lineNum"> 106</span> <span class="tlaGNC"> 8 : throw std::logic_error(CLASSIFIER_NOT_FITTED);</span></span>
<span id="L107"><span class="lineNum"> 107</span> : }</span>
<span id="L108"><span class="lineNum"> 108</span> <span class="tlaGNC"> 8 : auto m_ = X[0].size();</span></span>
<span id="L109"><span class="lineNum"> 109</span> <span class="tlaGNC"> 8 : auto n_ = X.size();</span></span>
<span id="L110"><span class="lineNum"> 110</span> <span class="tlaGNC"> 8 : std::vector&lt;std::vector&lt;int&gt;&gt; Xd(n_, std::vector&lt;int&gt;(m_, 0));</span></span>
<span id="L111"><span class="lineNum"> 111</span> <span class="tlaGNC"> 40 : for (auto i = 0; i &lt; n_; i++) {</span></span>
<span id="L112"><span class="lineNum"> 112</span> <span class="tlaGNC"> 64 : Xd[i] = std::vector&lt;int&gt;(X[i].begin(), X[i].end());</span></span>
<span id="L113"><span class="lineNum"> 113</span> : }</span>
<span id="L114"><span class="lineNum"> 114</span> <span class="tlaGNC"> 8 : auto yp = model.predict(Xd);</span></span>
<span id="L115"><span class="lineNum"> 115</span> <span class="tlaGNC"> 16 : return yp;</span></span>
<span id="L116"><span class="lineNum"> 116</span> <span class="tlaGNC"> 8 : }</span></span>
<span id="L117"><span class="lineNum"> 117</span> <span class="tlaGNC"> 1484 : torch::Tensor Classifier::predict_proba(torch::Tensor&amp; X)</span></span>
<span id="L118"><span class="lineNum"> 118</span> : {</span>
<span id="L119"><span class="lineNum"> 119</span> <span class="tlaGNC"> 1484 : if (!fitted) {</span></span>
<span id="L120"><span class="lineNum"> 120</span> <span class="tlaGNC"> 8 : throw std::logic_error(CLASSIFIER_NOT_FITTED);</span></span>
<span id="L121"><span class="lineNum"> 121</span> : }</span>
<span id="L122"><span class="lineNum"> 122</span> <span class="tlaGNC"> 1476 : return model.predict_proba(X);</span></span>
<span id="L123"><span class="lineNum"> 123</span> : }</span>
<span id="L124"><span class="lineNum"> 124</span> <span class="tlaGNC"> 548 : std::vector&lt;std::vector&lt;double&gt;&gt; Classifier::predict_proba(std::vector&lt;std::vector&lt;int&gt;&gt;&amp; X)</span></span>
<span id="L125"><span class="lineNum"> 125</span> : {</span>
<span id="L126"><span class="lineNum"> 126</span> <span class="tlaGNC"> 548 : if (!fitted) {</span></span>
<span id="L127"><span class="lineNum"> 127</span> <span class="tlaGNC"> 8 : throw std::logic_error(CLASSIFIER_NOT_FITTED);</span></span>
<span id="L128"><span class="lineNum"> 128</span> : }</span>
<span id="L129"><span class="lineNum"> 129</span> <span class="tlaGNC"> 540 : auto m_ = X[0].size();</span></span>
<span id="L130"><span class="lineNum"> 130</span> <span class="tlaGNC"> 540 : auto n_ = X.size();</span></span>
<span id="L131"><span class="lineNum"> 131</span> <span class="tlaGNC"> 540 : std::vector&lt;std::vector&lt;int&gt;&gt; Xd(n_, std::vector&lt;int&gt;(m_, 0));</span></span>
<span id="L132"><span class="lineNum"> 132</span> : // Convert to nxm vector</span>
<span id="L133"><span class="lineNum"> 133</span> <span class="tlaGNC"> 5040 : for (auto i = 0; i &lt; n_; i++) {</span></span>
<span id="L134"><span class="lineNum"> 134</span> <span class="tlaGNC"> 9000 : Xd[i] = std::vector&lt;int&gt;(X[i].begin(), X[i].end());</span></span>
<span id="L135"><span class="lineNum"> 135</span> : }</span>
<span id="L136"><span class="lineNum"> 136</span> <span class="tlaGNC"> 540 : auto yp = model.predict_proba(Xd);</span></span>
<span id="L137"><span class="lineNum"> 137</span> <span class="tlaGNC"> 1080 : return yp;</span></span>
<span id="L138"><span class="lineNum"> 138</span> <span class="tlaGNC"> 540 : }</span></span>
<span id="L139"><span class="lineNum"> 139</span> <span class="tlaGNC"> 112 : float Classifier::score(torch::Tensor&amp; X, torch::Tensor&amp; y)</span></span>
<span id="L140"><span class="lineNum"> 140</span> : {</span>
<span id="L141"><span class="lineNum"> 141</span> <span class="tlaGNC"> 112 : torch::Tensor y_pred = predict(X);</span></span>
<span id="L142"><span class="lineNum"> 142</span> <span class="tlaGNC"> 208 : return (y_pred == y).sum().item&lt;float&gt;() / y.size(0);</span></span>
<span id="L143"><span class="lineNum"> 143</span> <span class="tlaGNC"> 104 : }</span></span>
<span id="L144"><span class="lineNum"> 144</span> <span class="tlaGNC"> 16 : float Classifier::score(std::vector&lt;std::vector&lt;int&gt;&gt;&amp; X, std::vector&lt;int&gt;&amp; y)</span></span>
<span id="L145"><span class="lineNum"> 145</span> : {</span>
<span id="L146"><span class="lineNum"> 146</span> <span class="tlaGNC"> 16 : if (!fitted) {</span></span>
<span id="L147"><span class="lineNum"> 147</span> <span class="tlaGNC"> 8 : throw std::logic_error(CLASSIFIER_NOT_FITTED);</span></span>
<span id="L148"><span class="lineNum"> 148</span> : }</span>
<span id="L149"><span class="lineNum"> 149</span> <span class="tlaGNC"> 8 : return model.score(X, y);</span></span>
<span id="L150"><span class="lineNum"> 150</span> : }</span>
<span id="L151"><span class="lineNum"> 151</span> <span class="tlaGNC"> 24 : std::vector&lt;std::string&gt; Classifier::show() const</span></span>
<span id="L152"><span class="lineNum"> 152</span> : {</span>
<span id="L153"><span class="lineNum"> 153</span> <span class="tlaGNC"> 24 : return model.show();</span></span>
<span id="L154"><span class="lineNum"> 154</span> : }</span>
<span id="L155"><span class="lineNum"> 155</span> <span class="tlaGNC"> 1576 : void Classifier::addNodes()</span></span>
<span id="L156"><span class="lineNum"> 156</span> : {</span>
<span id="L157"><span class="lineNum"> 157</span> : // Add all nodes to the network</span>
<span id="L158"><span class="lineNum"> 158</span> <span class="tlaGNC"> 30872 : for (const auto&amp; feature : features) {</span></span>
<span id="L159"><span class="lineNum"> 159</span> <span class="tlaGNC"> 29296 : model.addNode(feature);</span></span>
<span id="L160"><span class="lineNum"> 160</span> : }</span>
<span id="L161"><span class="lineNum"> 161</span> <span class="tlaGNC"> 1576 : model.addNode(className);</span></span>
<span id="L162"><span class="lineNum"> 162</span> <span class="tlaGNC"> 1576 : }</span></span>
<span id="L163"><span class="lineNum"> 163</span> <span class="tlaGNC"> 332 : int Classifier::getNumberOfNodes() const</span></span>
<span id="L164"><span class="lineNum"> 164</span> : {</span>
<span id="L165"><span class="lineNum"> 165</span> : // Features does not include class</span>
<span id="L166"><span class="lineNum"> 166</span> <span class="tlaGNC"> 332 : return fitted ? model.getFeatures().size() : 0;</span></span>
<span id="L167"><span class="lineNum"> 167</span> : }</span>
<span id="L168"><span class="lineNum"> 168</span> <span class="tlaGNC"> 332 : int Classifier::getNumberOfEdges() const</span></span>
<span id="L169"><span class="lineNum"> 169</span> : {</span>
<span id="L170"><span class="lineNum"> 170</span> <span class="tlaGNC"> 332 : return fitted ? model.getNumEdges() : 0;</span></span>
<span id="L171"><span class="lineNum"> 171</span> : }</span>
<span id="L172"><span class="lineNum"> 172</span> <span class="tlaGNC"> 24 : int Classifier::getNumberOfStates() const</span></span>
<span id="L173"><span class="lineNum"> 173</span> : {</span>
<span id="L174"><span class="lineNum"> 174</span> <span class="tlaGNC"> 24 : return fitted ? model.getStates() : 0;</span></span>
<span id="L175"><span class="lineNum"> 175</span> : }</span>
<span id="L176"><span class="lineNum"> 176</span> <span class="tlaGNC"> 348 : int Classifier::getClassNumStates() const</span></span>
<span id="L177"><span class="lineNum"> 177</span> : {</span>
<span id="L178"><span class="lineNum"> 178</span> <span class="tlaGNC"> 348 : return fitted ? model.getClassNumStates() : 0;</span></span>
<span id="L179"><span class="lineNum"> 179</span> : }</span>
<span id="L180"><span class="lineNum"> 180</span> <span class="tlaGNC"> 4 : std::vector&lt;std::string&gt; Classifier::topological_order()</span></span>
<span id="L181"><span class="lineNum"> 181</span> : {</span>
<span id="L182"><span class="lineNum"> 182</span> <span class="tlaGNC"> 4 : return model.topological_sort();</span></span>
<span id="L183"><span class="lineNum"> 183</span> : }</span>
<span id="L184"><span class="lineNum"> 184</span> <span class="tlaGNC"> 4 : std::string Classifier::dump_cpt() const</span></span>
<span id="L185"><span class="lineNum"> 185</span> : {</span>
<span id="L186"><span class="lineNum"> 186</span> <span class="tlaGNC"> 4 : return model.dump_cpt();</span></span>
<span id="L187"><span class="lineNum"> 187</span> : }</span>
<span id="L188"><span class="lineNum"> 188</span> <span class="tlaGNC"> 92 : void Classifier::setHyperparameters(const nlohmann::json&amp; hyperparameters)</span></span>
<span id="L189"><span class="lineNum"> 189</span> : {</span>
<span id="L190"><span class="lineNum"> 190</span> <span class="tlaGNC"> 92 : if (!hyperparameters.empty()) {</span></span>
<span id="L191"><span class="lineNum"> 191</span> <span class="tlaGNC"> 8 : throw std::invalid_argument(&quot;Invalid hyperparameters&quot; + hyperparameters.dump());</span></span>
<span id="L192"><span class="lineNum"> 192</span> : }</span>
<span id="L193"><span class="lineNum"> 193</span> <span class="tlaGNC"> 84 : }</span></span>
<span id="L194"><span class="lineNum"> 194</span> : }</span>
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<td class="headerValue">2024-05-06 17:54:04</td>
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<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
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<td class="coverFnHi">80</td>
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<td class="coverFn"><a href="Classifier.h.gcov.html#L30">bayesnet::Classifier::getStatus() const</a></td>
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<td class="headerValue">2024-05-06 17:54:04</td>
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<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">4</td>
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<pre class="sourceHeading"> Line data Source code</pre>
<pre class="source">
<span id="L1"><span class="lineNum"> 1</span> : // ***************************************************************</span>
<span id="L2"><span class="lineNum"> 2</span> : // SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez</span>
<span id="L3"><span class="lineNum"> 3</span> : // SPDX-FileType: SOURCE</span>
<span id="L4"><span class="lineNum"> 4</span> : // SPDX-License-Identifier: MIT</span>
<span id="L5"><span class="lineNum"> 5</span> : // ***************************************************************</span>
<span id="L6"><span class="lineNum"> 6</span> : </span>
<span id="L7"><span class="lineNum"> 7</span> : #ifndef CLASSIFIER_H</span>
<span id="L8"><span class="lineNum"> 8</span> : #define CLASSIFIER_H</span>
<span id="L9"><span class="lineNum"> 9</span> : #include &lt;torch/torch.h&gt;</span>
<span id="L10"><span class="lineNum"> 10</span> : #include &quot;bayesnet/utils/BayesMetrics.h&quot;</span>
<span id="L11"><span class="lineNum"> 11</span> : #include &quot;bayesnet/network/Network.h&quot;</span>
<span id="L12"><span class="lineNum"> 12</span> : #include &quot;bayesnet/BaseClassifier.h&quot;</span>
<span id="L13"><span class="lineNum"> 13</span> : </span>
<span id="L14"><span class="lineNum"> 14</span> : namespace bayesnet {</span>
<span id="L15"><span class="lineNum"> 15</span> : class Classifier : public BaseClassifier {</span>
<span id="L16"><span class="lineNum"> 16</span> : public:</span>
<span id="L17"><span class="lineNum"> 17</span> : Classifier(Network model);</span>
<span id="L18"><span class="lineNum"> 18</span> <span class="tlaGNC tlaBgGNC"> 1680 : virtual ~Classifier() = default;</span></span>
<span id="L19"><span class="lineNum"> 19</span> : Classifier&amp; fit(std::vector&lt;std::vector&lt;int&gt;&gt;&amp; X, std::vector&lt;int&gt;&amp; y, const std::vector&lt;std::string&gt;&amp; features, const std::string&amp; className, std::map&lt;std::string, std::vector&lt;int&gt;&gt;&amp; states) override;</span>
<span id="L20"><span class="lineNum"> 20</span> : Classifier&amp; fit(torch::Tensor&amp; X, torch::Tensor&amp; y, const std::vector&lt;std::string&gt;&amp; features, const std::string&amp; className, std::map&lt;std::string, std::vector&lt;int&gt;&gt;&amp; states) override;</span>
<span id="L21"><span class="lineNum"> 21</span> : Classifier&amp; fit(torch::Tensor&amp; dataset, const std::vector&lt;std::string&gt;&amp; features, const std::string&amp; className, std::map&lt;std::string, std::vector&lt;int&gt;&gt;&amp; states) override;</span>
<span id="L22"><span class="lineNum"> 22</span> : Classifier&amp; fit(torch::Tensor&amp; dataset, const std::vector&lt;std::string&gt;&amp; features, const std::string&amp; className, std::map&lt;std::string, std::vector&lt;int&gt;&gt;&amp; states, const torch::Tensor&amp; weights) override;</span>
<span id="L23"><span class="lineNum"> 23</span> : void addNodes();</span>
<span id="L24"><span class="lineNum"> 24</span> : int getNumberOfNodes() const override;</span>
<span id="L25"><span class="lineNum"> 25</span> : int getNumberOfEdges() const override;</span>
<span id="L26"><span class="lineNum"> 26</span> : int getNumberOfStates() const override;</span>
<span id="L27"><span class="lineNum"> 27</span> : int getClassNumStates() const override;</span>
<span id="L28"><span class="lineNum"> 28</span> : torch::Tensor predict(torch::Tensor&amp; X) override;</span>
<span id="L29"><span class="lineNum"> 29</span> : std::vector&lt;int&gt; predict(std::vector&lt;std::vector&lt;int&gt;&gt;&amp; X) override;</span>
<span id="L30"><span class="lineNum"> 30</span> : torch::Tensor predict_proba(torch::Tensor&amp; X) override;</span>
<span id="L31"><span class="lineNum"> 31</span> : std::vector&lt;std::vector&lt;double&gt;&gt; predict_proba(std::vector&lt;std::vector&lt;int&gt;&gt;&amp; X) override;</span>
<span id="L32"><span class="lineNum"> 32</span> <span class="tlaGNC"> 128 : status_t getStatus() const override { return status; }</span></span>
<span id="L33"><span class="lineNum"> 33</span> <span class="tlaGNC"> 96 : std::string getVersion() override { return { project_version.begin(), project_version.end() }; };</span></span>
<span id="L34"><span class="lineNum"> 34</span> : float score(torch::Tensor&amp; X, torch::Tensor&amp; y) override;</span>
<span id="L35"><span class="lineNum"> 35</span> : float score(std::vector&lt;std::vector&lt;int&gt;&gt;&amp; X, std::vector&lt;int&gt;&amp; y) override;</span>
<span id="L36"><span class="lineNum"> 36</span> : std::vector&lt;std::string&gt; show() const override;</span>
<span id="L37"><span class="lineNum"> 37</span> : std::vector&lt;std::string&gt; topological_order() override;</span>
<span id="L38"><span class="lineNum"> 38</span> <span class="tlaGNC"> 80 : std::vector&lt;std::string&gt; getNotes() const override { return notes; }</span></span>
<span id="L39"><span class="lineNum"> 39</span> : std::string dump_cpt() const override;</span>
<span id="L40"><span class="lineNum"> 40</span> : void setHyperparameters(const nlohmann::json&amp; hyperparameters) override; //For classifiers that don't have hyperparameters</span>
<span id="L41"><span class="lineNum"> 41</span> : protected:</span>
<span id="L42"><span class="lineNum"> 42</span> : bool fitted;</span>
<span id="L43"><span class="lineNum"> 43</span> : unsigned int m, n; // m: number of samples, n: number of features</span>
<span id="L44"><span class="lineNum"> 44</span> : Network model;</span>
<span id="L45"><span class="lineNum"> 45</span> : Metrics metrics;</span>
<span id="L46"><span class="lineNum"> 46</span> : std::vector&lt;std::string&gt; features;</span>
<span id="L47"><span class="lineNum"> 47</span> : std::string className;</span>
<span id="L48"><span class="lineNum"> 48</span> : std::map&lt;std::string, std::vector&lt;int&gt;&gt; states;</span>
<span id="L49"><span class="lineNum"> 49</span> : torch::Tensor dataset; // (n+1)xm tensor</span>
<span id="L50"><span class="lineNum"> 50</span> : status_t status = NORMAL;</span>
<span id="L51"><span class="lineNum"> 51</span> : std::vector&lt;std::string&gt; notes; // Used to store messages occurred during the fit process</span>
<span id="L52"><span class="lineNum"> 52</span> : void checkFitParameters();</span>
<span id="L53"><span class="lineNum"> 53</span> : virtual void buildModel(const torch::Tensor&amp; weights) = 0;</span>
<span id="L54"><span class="lineNum"> 54</span> : void trainModel(const torch::Tensor&amp; weights) override;</span>
<span id="L55"><span class="lineNum"> 55</span> : void buildDataset(torch::Tensor&amp; y);</span>
<span id="L56"><span class="lineNum"> 56</span> : private:</span>
<span id="L57"><span class="lineNum"> 57</span> : Classifier&amp; build(const std::vector&lt;std::string&gt;&amp; features, const std::string&amp; className, std::map&lt;std::string, std::vector&lt;int&gt;&gt;&amp; states, const torch::Tensor&amp; weights);</span>
<span id="L58"><span class="lineNum"> 58</span> : };</span>
<span id="L59"><span class="lineNum"> 59</span> : }</span>
<span id="L60"><span class="lineNum"> 60</span> : #endif</span>
<span id="L61"><span class="lineNum"> 61</span> : </span>
<span id="L62"><span class="lineNum"> 62</span> : </span>
<span id="L63"><span class="lineNum"> 63</span> : </span>
<span id="L64"><span class="lineNum"> 64</span> : </span>
<span id="L65"><span class="lineNum"> 65</span> : </span>
</pre>
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<td width="10%" class="headerValue"><a href="../../index.html" target="_parent">top level</a> - <a href="index.html" target="_parent">bayesnet/classifiers</a> - KDB.cc<span style="font-size: 80%;"> (<a href="KDB.cc.gcov.html">source</a> / functions)</span></td>
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<td width="5%"></td>
<td width="5%" class="headerCovTableHead">Coverage</td>
<td width="5%" class="headerCovTableHead" title="Covered + Uncovered code">Total</td>
<td width="5%" class="headerCovTableHead" title="Exercised code only">Hit</td>
</tr>
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<td class="headerItem">Test:</td>
<td class="headerValue">BayesNet Coverage Report</td>
<td></td>
<td class="headerItem">Lines:</td>
<td class="headerCovTableEntryHi">96.3&nbsp;%</td>
<td class="headerCovTableEntry">54</td>
<td class="headerCovTableEntry">52</td>
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<td class="headerItem">Test Date:</td>
<td class="headerValue">2024-05-06 17:54:04</td>
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<td class="headerItem">Functions:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">5</td>
<td class="headerCovTableEntry">5</td>
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<td class="tableHead">Function Name <span title="Click to sort table by function name" class="tableHeadSort"><a href="KDB.cc.func.html"><img src="../../updown.png" width=10 height=14 alt="Sort by function name" title="Click to sort table by function name" border=0></a></span></td>
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<td class="coverFn"><a href="KDB.cc.gcov.html#L101">bayesnet::KDB::graph(std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;) const</a></td>
<td class="coverFnHi">8</td>
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<tr>
<td class="coverFn"><a href="KDB.cc.gcov.html#L13">bayesnet::KDB::setHyperparameters(nlohmann::json_abi_v3_11_3::basic_json&lt;std::map, std::vector, std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, bool, long, unsigned long, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector&lt;unsigned char, std::allocator&lt;unsigned char&gt; &gt;, void&gt; const&amp;)</a></td>
<td class="coverFnHi">12</td>
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<td class="coverFn"><a href="KDB.cc.gcov.html#L26">bayesnet::KDB::buildModel(at::Tensor const&amp;)</a></td>
<td class="coverFnHi">52</td>
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<td class="coverFn"><a href="KDB.cc.gcov.html#L8">bayesnet::KDB::KDB(int, float)</a></td>
<td class="coverFnHi">148</td>
</tr>
<tr>
<td class="coverFn"><a href="KDB.cc.gcov.html#L77">bayesnet::KDB::add_m_edges(int, std::vector&lt;int, std::allocator&lt;int&gt; &gt;&amp;, at::Tensor&amp;)</a></td>
<td class="coverFnHi">344</td>
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<td width="5%" class="headerCovTableHead">Coverage</td>
<td width="5%" class="headerCovTableHead" title="Covered + Uncovered code">Total</td>
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<td class="headerItem">Test:</td>
<td class="headerValue">BayesNet Coverage Report</td>
<td></td>
<td class="headerItem">Lines:</td>
<td class="headerCovTableEntryHi">96.3&nbsp;%</td>
<td class="headerCovTableEntry">54</td>
<td class="headerCovTableEntry">52</td>
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<td class="headerItem">Test Date:</td>
<td class="headerValue">2024-05-06 17:54:04</td>
<td></td>
<td class="headerItem">Functions:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">5</td>
<td class="headerCovTableEntry">5</td>
</tr>
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<td class="headerItem">Legend:</td>
<td class="headerValueLeg"> Lines:
<span class="coverLegendCov">hit</span>
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<td class="tableHead">Function Name <span title="Click to sort table by function name" class="tableHeadSort"><img src="../../glass.png" width=10 height=14 alt="Sort by function name" title="Click to sort table by function name" border=0></span></td>
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<td class="coverFn"><a href="KDB.cc.gcov.html#L8">bayesnet::KDB::KDB(int, float)</a></td>
<td class="coverFnHi">148</td>
</tr>
<tr>
<td class="coverFn"><a href="KDB.cc.gcov.html#L77">bayesnet::KDB::add_m_edges(int, std::vector&lt;int, std::allocator&lt;int&gt; &gt;&amp;, at::Tensor&amp;)</a></td>
<td class="coverFnHi">344</td>
</tr>
<tr>
<td class="coverFn"><a href="KDB.cc.gcov.html#L26">bayesnet::KDB::buildModel(at::Tensor const&amp;)</a></td>
<td class="coverFnHi">52</td>
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<tr>
<td class="coverFn"><a href="KDB.cc.gcov.html#L101">bayesnet::KDB::graph(std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;) const</a></td>
<td class="coverFnHi">8</td>
</tr>
<tr>
<td class="coverFn"><a href="KDB.cc.gcov.html#L13">bayesnet::KDB::setHyperparameters(nlohmann::json_abi_v3_11_3::basic_json&lt;std::map, std::vector, std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, bool, long, unsigned long, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector&lt;unsigned char, std::allocator&lt;unsigned char&gt; &gt;, void&gt; const&amp;)</a></td>
<td class="coverFnHi">12</td>
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<td width="5%" class="headerCovTableHead" title="Exercised code only">Hit</td>
</tr>
<tr>
<td class="headerItem">Test:</td>
<td class="headerValue">BayesNet Coverage Report</td>
<td></td>
<td class="headerItem">Lines:</td>
<td class="headerCovTableEntryHi">96.3&nbsp;%</td>
<td class="headerCovTableEntry">54</td>
<td class="headerCovTableEntry">52</td>
</tr>
<tr>
<td class="headerItem">Test Date:</td>
<td class="headerValue">2024-05-06 17:54:04</td>
<td></td>
<td class="headerItem">Functions:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">5</td>
<td class="headerCovTableEntry">5</td>
</tr>
<tr>
<td class="headerItem">Legend:</td>
<td class="headerValueLeg"> Lines:
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<pre class="sourceHeading"> Line data Source code</pre>
<pre class="source">
<span id="L1"><span class="lineNum"> 1</span> : // ***************************************************************</span>
<span id="L2"><span class="lineNum"> 2</span> : // SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez</span>
<span id="L3"><span class="lineNum"> 3</span> : // SPDX-FileType: SOURCE</span>
<span id="L4"><span class="lineNum"> 4</span> : // SPDX-License-Identifier: MIT</span>
<span id="L5"><span class="lineNum"> 5</span> : // ***************************************************************</span>
<span id="L6"><span class="lineNum"> 6</span> : </span>
<span id="L7"><span class="lineNum"> 7</span> : #include &quot;KDB.h&quot;</span>
<span id="L8"><span class="lineNum"> 8</span> : </span>
<span id="L9"><span class="lineNum"> 9</span> : namespace bayesnet {</span>
<span id="L10"><span class="lineNum"> 10</span> <span class="tlaGNC tlaBgGNC"> 148 : KDB::KDB(int k, float theta) : Classifier(Network()), k(k), theta(theta)</span></span>
<span id="L11"><span class="lineNum"> 11</span> : {</span>
<span id="L12"><span class="lineNum"> 12</span> <span class="tlaGNC"> 444 : validHyperparameters = { &quot;k&quot;, &quot;theta&quot; };</span></span>
<span id="L13"><span class="lineNum"> 13</span> : </span>
<span id="L14"><span class="lineNum"> 14</span> <span class="tlaGNC"> 444 : }</span></span>
<span id="L15"><span class="lineNum"> 15</span> <span class="tlaGNC"> 12 : void KDB::setHyperparameters(const nlohmann::json&amp; hyperparameters_)</span></span>
<span id="L16"><span class="lineNum"> 16</span> : {</span>
<span id="L17"><span class="lineNum"> 17</span> <span class="tlaGNC"> 12 : auto hyperparameters = hyperparameters_;</span></span>
<span id="L18"><span class="lineNum"> 18</span> <span class="tlaGNC"> 12 : if (hyperparameters.contains(&quot;k&quot;)) {</span></span>
<span id="L19"><span class="lineNum"> 19</span> <span class="tlaGNC"> 4 : k = hyperparameters[&quot;k&quot;];</span></span>
<span id="L20"><span class="lineNum"> 20</span> <span class="tlaGNC"> 4 : hyperparameters.erase(&quot;k&quot;);</span></span>
<span id="L21"><span class="lineNum"> 21</span> : }</span>
<span id="L22"><span class="lineNum"> 22</span> <span class="tlaGNC"> 12 : if (hyperparameters.contains(&quot;theta&quot;)) {</span></span>
<span id="L23"><span class="lineNum"> 23</span> <span class="tlaGNC"> 4 : theta = hyperparameters[&quot;theta&quot;];</span></span>
<span id="L24"><span class="lineNum"> 24</span> <span class="tlaGNC"> 4 : hyperparameters.erase(&quot;theta&quot;);</span></span>
<span id="L25"><span class="lineNum"> 25</span> : }</span>
<span id="L26"><span class="lineNum"> 26</span> <span class="tlaGNC"> 12 : Classifier::setHyperparameters(hyperparameters);</span></span>
<span id="L27"><span class="lineNum"> 27</span> <span class="tlaGNC"> 12 : }</span></span>
<span id="L28"><span class="lineNum"> 28</span> <span class="tlaGNC"> 52 : void KDB::buildModel(const torch::Tensor&amp; weights)</span></span>
<span id="L29"><span class="lineNum"> 29</span> : {</span>
<span id="L30"><span class="lineNum"> 30</span> : /*</span>
<span id="L31"><span class="lineNum"> 31</span> : 1. For each feature Xi, compute mutual information, I(X;C),</span>
<span id="L32"><span class="lineNum"> 32</span> : where C is the class.</span>
<span id="L33"><span class="lineNum"> 33</span> : 2. Compute class conditional mutual information I(Xi;XjIC), f or each</span>
<span id="L34"><span class="lineNum"> 34</span> : pair of features Xi and Xj, where i#j.</span>
<span id="L35"><span class="lineNum"> 35</span> : 3. Let the used variable list, S, be empty.</span>
<span id="L36"><span class="lineNum"> 36</span> : 4. Let the DAG network being constructed, BN, begin with a single</span>
<span id="L37"><span class="lineNum"> 37</span> : class node, C.</span>
<span id="L38"><span class="lineNum"> 38</span> : 5. Repeat until S includes all domain features</span>
<span id="L39"><span class="lineNum"> 39</span> : 5.1. Select feature Xmax which is not in S and has the largest value</span>
<span id="L40"><span class="lineNum"> 40</span> : I(Xmax;C).</span>
<span id="L41"><span class="lineNum"> 41</span> : 5.2. Add a node to BN representing Xmax.</span>
<span id="L42"><span class="lineNum"> 42</span> : 5.3. Add an arc from C to Xmax in BN.</span>
<span id="L43"><span class="lineNum"> 43</span> : 5.4. Add m = min(lSl,/c) arcs from m distinct features Xj in S with</span>
<span id="L44"><span class="lineNum"> 44</span> : the highest value for I(Xmax;X,jC).</span>
<span id="L45"><span class="lineNum"> 45</span> : 5.5. Add Xmax to S.</span>
<span id="L46"><span class="lineNum"> 46</span> : Compute the conditional probabilility infered by the structure of BN by</span>
<span id="L47"><span class="lineNum"> 47</span> : using counts from DB, and output BN.</span>
<span id="L48"><span class="lineNum"> 48</span> : */</span>
<span id="L49"><span class="lineNum"> 49</span> : // 1. For each feature Xi, compute mutual information, I(X;C),</span>
<span id="L50"><span class="lineNum"> 50</span> : // where C is the class.</span>
<span id="L51"><span class="lineNum"> 51</span> <span class="tlaGNC"> 52 : addNodes();</span></span>
<span id="L52"><span class="lineNum"> 52</span> <span class="tlaGNC"> 156 : const torch::Tensor&amp; y = dataset.index({ -1, &quot;...&quot; });</span></span>
<span id="L53"><span class="lineNum"> 53</span> <span class="tlaGNC"> 52 : std::vector&lt;double&gt; mi;</span></span>
<span id="L54"><span class="lineNum"> 54</span> <span class="tlaGNC"> 396 : for (auto i = 0; i &lt; features.size(); i++) {</span></span>
<span id="L55"><span class="lineNum"> 55</span> <span class="tlaGNC"> 1032 : torch::Tensor firstFeature = dataset.index({ i, &quot;...&quot; });</span></span>
<span id="L56"><span class="lineNum"> 56</span> <span class="tlaGNC"> 344 : mi.push_back(metrics.mutualInformation(firstFeature, y, weights));</span></span>
<span id="L57"><span class="lineNum"> 57</span> <span class="tlaGNC"> 344 : }</span></span>
<span id="L58"><span class="lineNum"> 58</span> : // 2. Compute class conditional mutual information I(Xi;XjIC), f or each</span>
<span id="L59"><span class="lineNum"> 59</span> <span class="tlaGNC"> 52 : auto conditionalEdgeWeights = metrics.conditionalEdge(weights);</span></span>
<span id="L60"><span class="lineNum"> 60</span> : // 3. Let the used variable list, S, be empty.</span>
<span id="L61"><span class="lineNum"> 61</span> <span class="tlaGNC"> 52 : std::vector&lt;int&gt; S;</span></span>
<span id="L62"><span class="lineNum"> 62</span> : // 4. Let the DAG network being constructed, BN, begin with a single</span>
<span id="L63"><span class="lineNum"> 63</span> : // class node, C.</span>
<span id="L64"><span class="lineNum"> 64</span> : // 5. Repeat until S includes all domain features</span>
<span id="L65"><span class="lineNum"> 65</span> : // 5.1. Select feature Xmax which is not in S and has the largest value</span>
<span id="L66"><span class="lineNum"> 66</span> : // I(Xmax;C).</span>
<span id="L67"><span class="lineNum"> 67</span> <span class="tlaGNC"> 52 : auto order = argsort(mi);</span></span>
<span id="L68"><span class="lineNum"> 68</span> <span class="tlaGNC"> 396 : for (auto idx : order) {</span></span>
<span id="L69"><span class="lineNum"> 69</span> : // 5.2. Add a node to BN representing Xmax.</span>
<span id="L70"><span class="lineNum"> 70</span> : // 5.3. Add an arc from C to Xmax in BN.</span>
<span id="L71"><span class="lineNum"> 71</span> <span class="tlaGNC"> 344 : model.addEdge(className, features[idx]);</span></span>
<span id="L72"><span class="lineNum"> 72</span> : // 5.4. Add m = min(lSl,/c) arcs from m distinct features Xj in S with</span>
<span id="L73"><span class="lineNum"> 73</span> : // the highest value for I(Xmax;X,jC).</span>
<span id="L74"><span class="lineNum"> 74</span> <span class="tlaGNC"> 344 : add_m_edges(idx, S, conditionalEdgeWeights);</span></span>
<span id="L75"><span class="lineNum"> 75</span> : // 5.5. Add Xmax to S.</span>
<span id="L76"><span class="lineNum"> 76</span> <span class="tlaGNC"> 344 : S.push_back(idx);</span></span>
<span id="L77"><span class="lineNum"> 77</span> : }</span>
<span id="L78"><span class="lineNum"> 78</span> <span class="tlaGNC"> 448 : }</span></span>
<span id="L79"><span class="lineNum"> 79</span> <span class="tlaGNC"> 344 : void KDB::add_m_edges(int idx, std::vector&lt;int&gt;&amp; S, torch::Tensor&amp; weights)</span></span>
<span id="L80"><span class="lineNum"> 80</span> : {</span>
<span id="L81"><span class="lineNum"> 81</span> <span class="tlaGNC"> 344 : auto n_edges = std::min(k, static_cast&lt;int&gt;(S.size()));</span></span>
<span id="L82"><span class="lineNum"> 82</span> <span class="tlaGNC"> 344 : auto cond_w = clone(weights);</span></span>
<span id="L83"><span class="lineNum"> 83</span> <span class="tlaGNC"> 344 : bool exit_cond = k == 0;</span></span>
<span id="L84"><span class="lineNum"> 84</span> <span class="tlaGNC"> 344 : int num = 0;</span></span>
<span id="L85"><span class="lineNum"> 85</span> <span class="tlaGNC"> 1004 : while (!exit_cond) {</span></span>
<span id="L86"><span class="lineNum"> 86</span> <span class="tlaGNC"> 2640 : auto max_minfo = argmax(cond_w.index({ idx, &quot;...&quot; })).item&lt;int&gt;();</span></span>
<span id="L87"><span class="lineNum"> 87</span> <span class="tlaGNC"> 660 : auto belongs = find(S.begin(), S.end(), max_minfo) != S.end();</span></span>
<span id="L88"><span class="lineNum"> 88</span> <span class="tlaGNC"> 1764 : if (belongs &amp;&amp; cond_w.index({ idx, max_minfo }).item&lt;float&gt;() &gt; theta) {</span></span>
<span id="L89"><span class="lineNum"> 89</span> : try {</span>
<span id="L90"><span class="lineNum"> 90</span> <span class="tlaGNC"> 320 : model.addEdge(features[max_minfo], features[idx]);</span></span>
<span id="L91"><span class="lineNum"> 91</span> <span class="tlaGNC"> 320 : num++;</span></span>
<span id="L92"><span class="lineNum"> 92</span> : }</span>
<span id="L93"><span class="lineNum"> 93</span> <span class="tlaUNC tlaBgUNC"> 0 : catch (const std::invalid_argument&amp; e) {</span></span>
<span id="L94"><span class="lineNum"> 94</span> : // Loops are not allowed</span>
<span id="L95"><span class="lineNum"> 95</span> <span class="tlaUNC"> 0 : }</span></span>
<span id="L96"><span class="lineNum"> 96</span> : }</span>
<span id="L97"><span class="lineNum"> 97</span> <span class="tlaGNC tlaBgGNC"> 2640 : cond_w.index_put_({ idx, max_minfo }, -1);</span></span>
<span id="L98"><span class="lineNum"> 98</span> <span class="tlaGNC"> 1980 : auto candidates_mask = cond_w.index({ idx, &quot;...&quot; }).gt(theta);</span></span>
<span id="L99"><span class="lineNum"> 99</span> <span class="tlaGNC"> 660 : auto candidates = candidates_mask.nonzero();</span></span>
<span id="L100"><span class="lineNum"> 100</span> <span class="tlaGNC"> 660 : exit_cond = num == n_edges || candidates.size(0) == 0;</span></span>
<span id="L101"><span class="lineNum"> 101</span> <span class="tlaGNC"> 660 : }</span></span>
<span id="L102"><span class="lineNum"> 102</span> <span class="tlaGNC"> 2692 : }</span></span>
<span id="L103"><span class="lineNum"> 103</span> <span class="tlaGNC"> 8 : std::vector&lt;std::string&gt; KDB::graph(const std::string&amp; title) const</span></span>
<span id="L104"><span class="lineNum"> 104</span> : {</span>
<span id="L105"><span class="lineNum"> 105</span> <span class="tlaGNC"> 8 : std::string header{ title };</span></span>
<span id="L106"><span class="lineNum"> 106</span> <span class="tlaGNC"> 8 : if (title == &quot;KDB&quot;) {</span></span>
<span id="L107"><span class="lineNum"> 107</span> <span class="tlaGNC"> 8 : header += &quot; (k=&quot; + std::to_string(k) + &quot;, theta=&quot; + std::to_string(theta) + &quot;)&quot;;</span></span>
<span id="L108"><span class="lineNum"> 108</span> : }</span>
<span id="L109"><span class="lineNum"> 109</span> <span class="tlaGNC"> 16 : return model.graph(header);</span></span>
<span id="L110"><span class="lineNum"> 110</span> <span class="tlaGNC"> 8 : }</span></span>
<span id="L111"><span class="lineNum"> 111</span> : }</span>
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<td class="coverFn"><a href="KDB.h.gcov.html#L20">bayesnet::KDB::~KDB()</a></td>
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<pre class="sourceHeading"> Line data Source code</pre>
<pre class="source">
<span id="L1"><span class="lineNum"> 1</span> : // ***************************************************************</span>
<span id="L2"><span class="lineNum"> 2</span> : // SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez</span>
<span id="L3"><span class="lineNum"> 3</span> : // SPDX-FileType: SOURCE</span>
<span id="L4"><span class="lineNum"> 4</span> : // SPDX-License-Identifier: MIT</span>
<span id="L5"><span class="lineNum"> 5</span> : // ***************************************************************</span>
<span id="L6"><span class="lineNum"> 6</span> : </span>
<span id="L7"><span class="lineNum"> 7</span> : #ifndef KDB_H</span>
<span id="L8"><span class="lineNum"> 8</span> : #define KDB_H</span>
<span id="L9"><span class="lineNum"> 9</span> : #include &lt;torch/torch.h&gt;</span>
<span id="L10"><span class="lineNum"> 10</span> : #include &quot;bayesnet/utils/bayesnetUtils.h&quot;</span>
<span id="L11"><span class="lineNum"> 11</span> : #include &quot;Classifier.h&quot;</span>
<span id="L12"><span class="lineNum"> 12</span> : namespace bayesnet {</span>
<span id="L13"><span class="lineNum"> 13</span> : class KDB : public Classifier {</span>
<span id="L14"><span class="lineNum"> 14</span> : private:</span>
<span id="L15"><span class="lineNum"> 15</span> : int k;</span>
<span id="L16"><span class="lineNum"> 16</span> : float theta;</span>
<span id="L17"><span class="lineNum"> 17</span> : void add_m_edges(int idx, std::vector&lt;int&gt;&amp; S, torch::Tensor&amp; weights);</span>
<span id="L18"><span class="lineNum"> 18</span> : protected:</span>
<span id="L19"><span class="lineNum"> 19</span> : void buildModel(const torch::Tensor&amp; weights) override;</span>
<span id="L20"><span class="lineNum"> 20</span> : public:</span>
<span id="L21"><span class="lineNum"> 21</span> : explicit KDB(int k, float theta = 0.03);</span>
<span id="L22"><span class="lineNum"> 22</span> <span class="tlaGNC tlaBgGNC"> 44 : virtual ~KDB() = default;</span></span>
<span id="L23"><span class="lineNum"> 23</span> : void setHyperparameters(const nlohmann::json&amp; hyperparameters_) override;</span>
<span id="L24"><span class="lineNum"> 24</span> : std::vector&lt;std::string&gt; graph(const std::string&amp; name = &quot;KDB&quot;) const override;</span>
<span id="L25"><span class="lineNum"> 25</span> : };</span>
<span id="L26"><span class="lineNum"> 26</span> : }</span>
<span id="L27"><span class="lineNum"> 27</span> : #endif</span>
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<td width="5%" class="headerCovTableHead" title="Exercised code only">Hit</td>
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<td class="headerItem">Test:</td>
<td class="headerValue">BayesNet Coverage Report</td>
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<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">17</td>
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<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">4</td>
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<td class="coverFn"><a href="KDBLd.cc.gcov.html#L29">bayesnet::KDBLd::graph(std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;) const</a></td>
<td class="coverFnHi">4</td>
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<td class="coverFnHi">16</td>
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<td class="coverFn"><a href="KDBLd.cc.gcov.html#L9">bayesnet::KDBLd::fit(at::Tensor&amp;, at::Tensor&amp;, std::vector&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::allocator&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt; &gt; const&amp;, std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;, std::map&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::less&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt;, std::allocator&lt;std::pair&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const, std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt; &gt;&amp;)</a></td>
<td class="coverFnHi">20</td>
</tr>
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<td class="coverFn"><a href="KDBLd.cc.gcov.html#L8">bayesnet::KDBLd::KDBLd(int)</a></td>
<td class="coverFnHi">68</td>
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<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">4</td>
<td class="headerCovTableEntry">4</td>
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<td class="coverFn"><a href="KDBLd.cc.gcov.html#L8">bayesnet::KDBLd::KDBLd(int)</a></td>
<td class="coverFnHi">68</td>
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<td class="coverFn"><a href="KDBLd.cc.gcov.html#L9">bayesnet::KDBLd::fit(at::Tensor&amp;, at::Tensor&amp;, std::vector&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::allocator&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt; &gt; const&amp;, std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;, std::map&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::less&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt;, std::allocator&lt;std::pair&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const, std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt; &gt;&amp;)</a></td>
<td class="coverFnHi">20</td>
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<td class="coverFn"><a href="KDBLd.cc.gcov.html#L29">bayesnet::KDBLd::graph(std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;) const</a></td>
<td class="coverFnHi">4</td>
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<td class="coverFn"><a href="KDBLd.cc.gcov.html#L24">bayesnet::KDBLd::predict(at::Tensor&amp;)</a></td>
<td class="coverFnHi">16</td>
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</tr>
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<td class="headerItem">Test:</td>
<td class="headerValue">BayesNet Coverage Report</td>
<td></td>
<td class="headerItem">Lines:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">17</td>
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<td class="headerItem">Test Date:</td>
<td class="headerValue">2024-05-06 17:54:04</td>
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<td class="headerItem">Functions:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">4</td>
<td class="headerCovTableEntry">4</td>
</tr>
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<td class="headerItem">Legend:</td>
<td class="headerValueLeg"> Lines:
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<pre class="sourceHeading"> Line data Source code</pre>
<pre class="source">
<span id="L1"><span class="lineNum"> 1</span> : // ***************************************************************</span>
<span id="L2"><span class="lineNum"> 2</span> : // SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez</span>
<span id="L3"><span class="lineNum"> 3</span> : // SPDX-FileType: SOURCE</span>
<span id="L4"><span class="lineNum"> 4</span> : // SPDX-License-Identifier: MIT</span>
<span id="L5"><span class="lineNum"> 5</span> : // ***************************************************************</span>
<span id="L6"><span class="lineNum"> 6</span> : </span>
<span id="L7"><span class="lineNum"> 7</span> : #include &quot;KDBLd.h&quot;</span>
<span id="L8"><span class="lineNum"> 8</span> : </span>
<span id="L9"><span class="lineNum"> 9</span> : namespace bayesnet {</span>
<span id="L10"><span class="lineNum"> 10</span> <span class="tlaGNC tlaBgGNC"> 68 : KDBLd::KDBLd(int k) : KDB(k), Proposal(dataset, features, className) {}</span></span>
<span id="L11"><span class="lineNum"> 11</span> <span class="tlaGNC"> 20 : KDBLd&amp; KDBLd::fit(torch::Tensor&amp; X_, torch::Tensor&amp; y_, const std::vector&lt;std::string&gt;&amp; features_, const std::string&amp; className_, map&lt;std::string, std::vector&lt;int&gt;&gt;&amp; states_)</span></span>
<span id="L12"><span class="lineNum"> 12</span> : {</span>
<span id="L13"><span class="lineNum"> 13</span> <span class="tlaGNC"> 20 : checkInput(X_, y_);</span></span>
<span id="L14"><span class="lineNum"> 14</span> <span class="tlaGNC"> 20 : features = features_;</span></span>
<span id="L15"><span class="lineNum"> 15</span> <span class="tlaGNC"> 20 : className = className_;</span></span>
<span id="L16"><span class="lineNum"> 16</span> <span class="tlaGNC"> 20 : Xf = X_;</span></span>
<span id="L17"><span class="lineNum"> 17</span> <span class="tlaGNC"> 20 : y = y_;</span></span>
<span id="L18"><span class="lineNum"> 18</span> : // Fills std::vectors Xv &amp; yv with the data from tensors X_ (discretized) &amp; y</span>
<span id="L19"><span class="lineNum"> 19</span> <span class="tlaGNC"> 20 : states = fit_local_discretization(y);</span></span>
<span id="L20"><span class="lineNum"> 20</span> : // We have discretized the input data</span>
<span id="L21"><span class="lineNum"> 21</span> : // 1st we need to fit the model to build the normal KDB structure, KDB::fit initializes the base Bayesian network</span>
<span id="L22"><span class="lineNum"> 22</span> <span class="tlaGNC"> 20 : KDB::fit(dataset, features, className, states);</span></span>
<span id="L23"><span class="lineNum"> 23</span> <span class="tlaGNC"> 20 : states = localDiscretizationProposal(states, model);</span></span>
<span id="L24"><span class="lineNum"> 24</span> <span class="tlaGNC"> 20 : return *this;</span></span>
<span id="L25"><span class="lineNum"> 25</span> : }</span>
<span id="L26"><span class="lineNum"> 26</span> <span class="tlaGNC"> 16 : torch::Tensor KDBLd::predict(torch::Tensor&amp; X)</span></span>
<span id="L27"><span class="lineNum"> 27</span> : {</span>
<span id="L28"><span class="lineNum"> 28</span> <span class="tlaGNC"> 16 : auto Xt = prepareX(X);</span></span>
<span id="L29"><span class="lineNum"> 29</span> <span class="tlaGNC"> 32 : return KDB::predict(Xt);</span></span>
<span id="L30"><span class="lineNum"> 30</span> <span class="tlaGNC"> 16 : }</span></span>
<span id="L31"><span class="lineNum"> 31</span> <span class="tlaGNC"> 4 : std::vector&lt;std::string&gt; KDBLd::graph(const std::string&amp; name) const</span></span>
<span id="L32"><span class="lineNum"> 32</span> : {</span>
<span id="L33"><span class="lineNum"> 33</span> <span class="tlaGNC"> 4 : return KDB::graph(name);</span></span>
<span id="L34"><span class="lineNum"> 34</span> : }</span>
<span id="L35"><span class="lineNum"> 35</span> : }</span>
</pre>
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<td class="headerItem">Functions:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">1</td>
<td class="headerCovTableEntry">1</td>
</tr>
<tr>
<td class="headerItem">Legend:</td>
<td class="headerValueLeg"> Lines:
<span class="coverLegendCov">hit</span>
<span class="coverLegendNoCov">not hit</span>
</td>
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<td class="coverFn"><a href="KDBLd.h.gcov.html#L15">bayesnet::KDBLd::~KDBLd()</a></td>
<td class="coverFnHi">20</td>
</tr>
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<td width="5%"></td>
<td width="5%" class="headerCovTableHead">Coverage</td>
<td width="5%" class="headerCovTableHead" title="Covered + Uncovered code">Total</td>
<td width="5%" class="headerCovTableHead" title="Exercised code only">Hit</td>
</tr>
<tr>
<td class="headerItem">Test:</td>
<td class="headerValue">BayesNet Coverage Report</td>
<td></td>
<td class="headerItem">Lines:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">1</td>
<td class="headerCovTableEntry">1</td>
</tr>
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<td class="headerItem">Test Date:</td>
<td class="headerValue">2024-05-06 17:54:04</td>
<td></td>
<td class="headerItem">Functions:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">1</td>
<td class="headerCovTableEntry">1</td>
</tr>
<tr>
<td class="headerItem">Legend:</td>
<td class="headerValueLeg"> Lines:
<span class="coverLegendCov">hit</span>
<span class="coverLegendNoCov">not hit</span>
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<td class="tableHead">Function Name <span title="Click to sort table by function name" class="tableHeadSort"><img src="../../glass.png" width=10 height=14 alt="Sort by function name" title="Click to sort table by function name" border=0></span></td>
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<td class="coverFn"><a href="KDBLd.h.gcov.html#L15">bayesnet::KDBLd::~KDBLd()</a></td>
<td class="coverFnHi">20</td>
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<td width="10%" class="headerItem">Current view:</td>
<td width="10%" class="headerValue"><a href="../../index.html" target="_parent">top level</a> - <a href="index.html" target="_parent">bayesnet/classifiers</a> - KDBLd.h<span style="font-size: 80%;"> (source / <a href="KDBLd.h.func-c.html">functions</a>)</span></td>
<td width="5%"></td>
<td width="5%"></td>
<td width="5%" class="headerCovTableHead">Coverage</td>
<td width="5%" class="headerCovTableHead" title="Covered + Uncovered code">Total</td>
<td width="5%" class="headerCovTableHead" title="Exercised code only">Hit</td>
</tr>
<tr>
<td class="headerItem">Test:</td>
<td class="headerValue">BayesNet Coverage Report</td>
<td></td>
<td class="headerItem">Lines:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">1</td>
<td class="headerCovTableEntry">1</td>
</tr>
<tr>
<td class="headerItem">Test Date:</td>
<td class="headerValue">2024-05-06 17:54:04</td>
<td></td>
<td class="headerItem">Functions:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">1</td>
<td class="headerCovTableEntry">1</td>
</tr>
<tr>
<td class="headerItem">Legend:</td>
<td class="headerValueLeg"> Lines:
<span class="coverLegendCov">hit</span>
<span class="coverLegendNoCov">not hit</span>
</td>
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<pre class="sourceHeading"> Line data Source code</pre>
<pre class="source">
<span id="L1"><span class="lineNum"> 1</span> : // ***************************************************************</span>
<span id="L2"><span class="lineNum"> 2</span> : // SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez</span>
<span id="L3"><span class="lineNum"> 3</span> : // SPDX-FileType: SOURCE</span>
<span id="L4"><span class="lineNum"> 4</span> : // SPDX-License-Identifier: MIT</span>
<span id="L5"><span class="lineNum"> 5</span> : // ***************************************************************</span>
<span id="L6"><span class="lineNum"> 6</span> : </span>
<span id="L7"><span class="lineNum"> 7</span> : #ifndef KDBLD_H</span>
<span id="L8"><span class="lineNum"> 8</span> : #define KDBLD_H</span>
<span id="L9"><span class="lineNum"> 9</span> : #include &quot;Proposal.h&quot;</span>
<span id="L10"><span class="lineNum"> 10</span> : #include &quot;KDB.h&quot;</span>
<span id="L11"><span class="lineNum"> 11</span> : </span>
<span id="L12"><span class="lineNum"> 12</span> : namespace bayesnet {</span>
<span id="L13"><span class="lineNum"> 13</span> : class KDBLd : public KDB, public Proposal {</span>
<span id="L14"><span class="lineNum"> 14</span> : private:</span>
<span id="L15"><span class="lineNum"> 15</span> : public:</span>
<span id="L16"><span class="lineNum"> 16</span> : explicit KDBLd(int k);</span>
<span id="L17"><span class="lineNum"> 17</span> <span class="tlaGNC tlaBgGNC"> 20 : virtual ~KDBLd() = default;</span></span>
<span id="L18"><span class="lineNum"> 18</span> : KDBLd&amp; fit(torch::Tensor&amp; X, torch::Tensor&amp; y, const std::vector&lt;std::string&gt;&amp; features, const std::string&amp; className, map&lt;std::string, std::vector&lt;int&gt;&gt;&amp; states) override;</span>
<span id="L19"><span class="lineNum"> 19</span> : std::vector&lt;std::string&gt; graph(const std::string&amp; name = &quot;KDB&quot;) const override;</span>
<span id="L20"><span class="lineNum"> 20</span> : torch::Tensor predict(torch::Tensor&amp; X) override;</span>
<span id="L21"><span class="lineNum"> 21</span> : static inline std::string version() { return &quot;0.0.1&quot;; };</span>
<span id="L22"><span class="lineNum"> 22</span> : };</span>
<span id="L23"><span class="lineNum"> 23</span> : }</span>
<span id="L24"><span class="lineNum"> 24</span> : #endif // !KDBLD_H</span>
</pre>
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<title>LCOV - BayesNet Coverage Report - bayesnet/classifiers/Proposal.cc - functions</title>
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<table width="100%" border=0 cellspacing=0 cellpadding=0>
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<tr>
<td width="100%">
<table cellpadding=1 border=0 width="100%">
<tr>
<td width="10%" class="headerItem">Current view:</td>
<td width="10%" class="headerValue"><a href="../../index.html" target="_parent">top level</a> - <a href="index.html" target="_parent">bayesnet/classifiers</a> - Proposal.cc<span style="font-size: 80%;"> (<a href="Proposal.cc.gcov.html">source</a> / functions)</span></td>
<td width="5%"></td>
<td width="5%"></td>
<td width="5%" class="headerCovTableHead">Coverage</td>
<td width="5%" class="headerCovTableHead" title="Covered + Uncovered code">Total</td>
<td width="5%" class="headerCovTableHead" title="Exercised code only">Hit</td>
</tr>
<tr>
<td class="headerItem">Test:</td>
<td class="headerValue">BayesNet Coverage Report</td>
<td></td>
<td class="headerItem">Lines:</td>
<td class="headerCovTableEntryHi">97.7&nbsp;%</td>
<td class="headerCovTableEntry">86</td>
<td class="headerCovTableEntry">84</td>
</tr>
<tr>
<td class="headerItem">Test Date:</td>
<td class="headerValue">2024-05-06 17:54:04</td>
<td></td>
<td class="headerItem">Functions:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">8</td>
<td class="headerCovTableEntry">8</td>
</tr>
<tr>
<td class="headerItem">Legend:</td>
<td class="headerValueLeg"> Lines:
<span class="coverLegendCov">hit</span>
<span class="coverLegendNoCov">not hit</span>
</td>
<td></td>
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<tr><td><img src="../../glass.png" width=3 height=3 alt=""></td></tr>
</table>
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<table cellpadding=1 cellspacing=1 border=0>
<tr><td><br></td></tr>
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<td class="tableHead">Function Name <span title="Click to sort table by function name" class="tableHeadSort"><a href="Proposal.cc.func.html"><img src="../../updown.png" width=10 height=14 alt="Sort by function name" title="Click to sort table by function name" border=0></a></span></td>
<td class="tableHead">Hit count <span title="Click to sort table by function hit count" class="tableHeadSort"><img src="../../glass.png" width=10 height=14 alt="Sort by function hit count" title="Click to sort table by function hit count" border=0></span></td>
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<td class="coverFn"><a href="Proposal.cc.gcov.html#L104">bayesnet::Proposal::prepareX(at::Tensor&amp;)</a></td>
<td class="coverFnHi">168</td>
</tr>
<tr>
<td class="coverFn"><a href="Proposal.cc.gcov.html#L10">bayesnet::Proposal::~Proposal()</a></td>
<td class="coverFnHi">200</td>
</tr>
<tr>
<td class="coverFn"><a href="Proposal.cc.gcov.html#L25">bayesnet::Proposal::localDiscretizationProposal(std::map&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::less&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt;, std::allocator&lt;std::pair&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const, std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt; &gt; const&amp;, bayesnet::Network&amp;)</a></td>
<td class="coverFnHi">212</td>
</tr>
<tr>
<td class="coverFn"><a href="Proposal.cc.gcov.html#L16">bayesnet::Proposal::checkInput(at::Tensor const&amp;, at::Tensor const&amp;)</a></td>
<td class="coverFnHi">228</td>
</tr>
<tr>
<td class="coverFn"><a href="Proposal.cc.gcov.html#L77">bayesnet::Proposal::fit_local_discretization[abi:cxx11](at::Tensor const&amp;)</a></td>
<td class="coverFnHi">232</td>
</tr>
<tr>
<td class="coverFn"><a href="Proposal.cc.gcov.html#L9">bayesnet::Proposal::Proposal(at::Tensor&amp;, std::vector&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::allocator&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt; &gt;&amp;, std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;&amp;)</a></td>
<td class="coverFnHi">424</td>
</tr>
<tr>
<td class="coverFn"><a href="Proposal.cc.gcov.html#L47">auto bayesnet::Proposal::localDiscretizationProposal(std::map&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::less&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt;, std::allocator&lt;std::pair&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const, std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt; &gt; const&amp;, bayesnet::Network&amp;)::{lambda(auto:1 const&amp;)#2}::operator()&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt;(std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;) const</a></td>
<td class="coverFnHi">1372</td>
</tr>
<tr>
<td class="coverFn"><a href="Proposal.cc.gcov.html#L41">auto bayesnet::Proposal::localDiscretizationProposal(std::map&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::less&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt;, std::allocator&lt;std::pair&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const, std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt; &gt; const&amp;, bayesnet::Network&amp;)::{lambda(auto:1 const&amp;)#1}::operator()&lt;bayesnet::Node*&gt;(bayesnet::Node* const&amp;) const</a></td>
<td class="coverFnHi">2696</td>
</tr>
</table>
<br>
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<td width="100%">
<table cellpadding=1 border=0 width="100%">
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<td width="10%" class="headerItem">Current view:</td>
<td width="10%" class="headerValue"><a href="../../index.html" target="_parent">top level</a> - <a href="index.html" target="_parent">bayesnet/classifiers</a> - Proposal.cc<span style="font-size: 80%;"> (<a href="Proposal.cc.gcov.html">source</a> / functions)</span></td>
<td width="5%"></td>
<td width="5%"></td>
<td width="5%" class="headerCovTableHead">Coverage</td>
<td width="5%" class="headerCovTableHead" title="Covered + Uncovered code">Total</td>
<td width="5%" class="headerCovTableHead" title="Exercised code only">Hit</td>
</tr>
<tr>
<td class="headerItem">Test:</td>
<td class="headerValue">BayesNet Coverage Report</td>
<td></td>
<td class="headerItem">Lines:</td>
<td class="headerCovTableEntryHi">97.7&nbsp;%</td>
<td class="headerCovTableEntry">86</td>
<td class="headerCovTableEntry">84</td>
</tr>
<tr>
<td class="headerItem">Test Date:</td>
<td class="headerValue">2024-05-06 17:54:04</td>
<td></td>
<td class="headerItem">Functions:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">8</td>
<td class="headerCovTableEntry">8</td>
</tr>
<tr>
<td class="headerItem">Legend:</td>
<td class="headerValueLeg"> Lines:
<span class="coverLegendCov">hit</span>
<span class="coverLegendNoCov">not hit</span>
</td>
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<tr><td><img src="../../glass.png" width=3 height=3 alt=""></td></tr>
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<td class="tableHead">Function Name <span title="Click to sort table by function name" class="tableHeadSort"><img src="../../glass.png" width=10 height=14 alt="Sort by function name" title="Click to sort table by function name" border=0></span></td>
<td class="tableHead">Hit count <span title="Click to sort table by function hit count" class="tableHeadSort"><a href="Proposal.cc.func-c.html"><img src="../../updown.png" width=10 height=14 alt="Sort by function hit count" title="Click to sort table by function hit count" border=0></a></span></td>
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<td class="coverFn"><a href="Proposal.cc.gcov.html#L41">auto bayesnet::Proposal::localDiscretizationProposal(std::map&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::less&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt;, std::allocator&lt;std::pair&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const, std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt; &gt; const&amp;, bayesnet::Network&amp;)::{lambda(auto:1 const&amp;)#1}::operator()&lt;bayesnet::Node*&gt;(bayesnet::Node* const&amp;) const</a></td>
<td class="coverFnHi">2696</td>
</tr>
<tr>
<td class="coverFn"><a href="Proposal.cc.gcov.html#L47">auto bayesnet::Proposal::localDiscretizationProposal(std::map&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::less&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt;, std::allocator&lt;std::pair&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const, std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt; &gt; const&amp;, bayesnet::Network&amp;)::{lambda(auto:1 const&amp;)#2}::operator()&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt;(std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;) const</a></td>
<td class="coverFnHi">1372</td>
</tr>
<tr>
<td class="coverFn"><a href="Proposal.cc.gcov.html#L9">bayesnet::Proposal::Proposal(at::Tensor&amp;, std::vector&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::allocator&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt; &gt;&amp;, std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;&amp;)</a></td>
<td class="coverFnHi">424</td>
</tr>
<tr>
<td class="coverFn"><a href="Proposal.cc.gcov.html#L16">bayesnet::Proposal::checkInput(at::Tensor const&amp;, at::Tensor const&amp;)</a></td>
<td class="coverFnHi">228</td>
</tr>
<tr>
<td class="coverFn"><a href="Proposal.cc.gcov.html#L77">bayesnet::Proposal::fit_local_discretization[abi:cxx11](at::Tensor const&amp;)</a></td>
<td class="coverFnHi">232</td>
</tr>
<tr>
<td class="coverFn"><a href="Proposal.cc.gcov.html#L25">bayesnet::Proposal::localDiscretizationProposal(std::map&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::less&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt;, std::allocator&lt;std::pair&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const, std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt; &gt; const&amp;, bayesnet::Network&amp;)</a></td>
<td class="coverFnHi">212</td>
</tr>
<tr>
<td class="coverFn"><a href="Proposal.cc.gcov.html#L104">bayesnet::Proposal::prepareX(at::Tensor&amp;)</a></td>
<td class="coverFnHi">168</td>
</tr>
<tr>
<td class="coverFn"><a href="Proposal.cc.gcov.html#L10">bayesnet::Proposal::~Proposal()</a></td>
<td class="coverFnHi">200</td>
</tr>
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<td width="10%" class="headerItem">Current view:</td>
<td width="10%" class="headerValue"><a href="../../index.html" target="_parent">top level</a> - <a href="index.html" target="_parent">bayesnet/classifiers</a> - Proposal.cc<span style="font-size: 80%;"> (source / <a href="Proposal.cc.func-c.html">functions</a>)</span></td>
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<td width="5%" class="headerCovTableHead">Coverage</td>
<td width="5%" class="headerCovTableHead" title="Covered + Uncovered code">Total</td>
<td width="5%" class="headerCovTableHead" title="Exercised code only">Hit</td>
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<td class="headerItem">Test:</td>
<td class="headerValue">BayesNet Coverage Report</td>
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<td class="headerItem">Lines:</td>
<td class="headerCovTableEntryHi">97.7&nbsp;%</td>
<td class="headerCovTableEntry">86</td>
<td class="headerCovTableEntry">84</td>
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<td class="headerItem">Test Date:</td>
<td class="headerValue">2024-05-06 17:54:04</td>
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<td class="headerItem">Functions:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">8</td>
<td class="headerCovTableEntry">8</td>
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<td class="headerItem">Legend:</td>
<td class="headerValueLeg"> Lines:
<span class="coverLegendCov">hit</span>
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<pre class="sourceHeading"> Line data Source code</pre>
<pre class="source">
<span id="L1"><span class="lineNum"> 1</span> : // ***************************************************************</span>
<span id="L2"><span class="lineNum"> 2</span> : // SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez</span>
<span id="L3"><span class="lineNum"> 3</span> : // SPDX-FileType: SOURCE</span>
<span id="L4"><span class="lineNum"> 4</span> : // SPDX-License-Identifier: MIT</span>
<span id="L5"><span class="lineNum"> 5</span> : // ***************************************************************</span>
<span id="L6"><span class="lineNum"> 6</span> : </span>
<span id="L7"><span class="lineNum"> 7</span> : #include &lt;ArffFiles.h&gt;</span>
<span id="L8"><span class="lineNum"> 8</span> : #include &quot;Proposal.h&quot;</span>
<span id="L9"><span class="lineNum"> 9</span> : </span>
<span id="L10"><span class="lineNum"> 10</span> : namespace bayesnet {</span>
<span id="L11"><span class="lineNum"> 11</span> <span class="tlaGNC tlaBgGNC"> 424 : Proposal::Proposal(torch::Tensor&amp; dataset_, std::vector&lt;std::string&gt;&amp; features_, std::string&amp; className_) : pDataset(dataset_), pFeatures(features_), pClassName(className_) {}</span></span>
<span id="L12"><span class="lineNum"> 12</span> <span class="tlaGNC"> 200 : Proposal::~Proposal()</span></span>
<span id="L13"><span class="lineNum"> 13</span> : {</span>
<span id="L14"><span class="lineNum"> 14</span> <span class="tlaGNC"> 1896 : for (auto&amp; [key, value] : discretizers) {</span></span>
<span id="L15"><span class="lineNum"> 15</span> <span class="tlaGNC"> 1696 : delete value;</span></span>
<span id="L16"><span class="lineNum"> 16</span> : }</span>
<span id="L17"><span class="lineNum"> 17</span> <span class="tlaGNC"> 200 : }</span></span>
<span id="L18"><span class="lineNum"> 18</span> <span class="tlaGNC"> 228 : void Proposal::checkInput(const torch::Tensor&amp; X, const torch::Tensor&amp; y)</span></span>
<span id="L19"><span class="lineNum"> 19</span> : {</span>
<span id="L20"><span class="lineNum"> 20</span> <span class="tlaGNC"> 228 : if (!torch::is_floating_point(X)) {</span></span>
<span id="L21"><span class="lineNum"> 21</span> <span class="tlaUNC tlaBgUNC"> 0 : throw std::invalid_argument(&quot;X must be a floating point tensor&quot;);</span></span>
<span id="L22"><span class="lineNum"> 22</span> : }</span>
<span id="L23"><span class="lineNum"> 23</span> <span class="tlaGNC tlaBgGNC"> 228 : if (torch::is_floating_point(y)) {</span></span>
<span id="L24"><span class="lineNum"> 24</span> <span class="tlaUNC tlaBgUNC"> 0 : throw std::invalid_argument(&quot;y must be an integer tensor&quot;);</span></span>
<span id="L25"><span class="lineNum"> 25</span> : }</span>
<span id="L26"><span class="lineNum"> 26</span> <span class="tlaGNC tlaBgGNC"> 228 : }</span></span>
<span id="L27"><span class="lineNum"> 27</span> <span class="tlaGNC"> 212 : map&lt;std::string, std::vector&lt;int&gt;&gt; Proposal::localDiscretizationProposal(const map&lt;std::string, std::vector&lt;int&gt;&gt;&amp; oldStates, Network&amp; model)</span></span>
<span id="L28"><span class="lineNum"> 28</span> : {</span>
<span id="L29"><span class="lineNum"> 29</span> : // order of local discretization is important. no good 0, 1, 2...</span>
<span id="L30"><span class="lineNum"> 30</span> : // although we rediscretize features after the local discretization of every feature</span>
<span id="L31"><span class="lineNum"> 31</span> <span class="tlaGNC"> 212 : auto order = model.topological_sort();</span></span>
<span id="L32"><span class="lineNum"> 32</span> <span class="tlaGNC"> 212 : auto&amp; nodes = model.getNodes();</span></span>
<span id="L33"><span class="lineNum"> 33</span> <span class="tlaGNC"> 212 : map&lt;std::string, std::vector&lt;int&gt;&gt; states = oldStates;</span></span>
<span id="L34"><span class="lineNum"> 34</span> <span class="tlaGNC"> 212 : std::vector&lt;int&gt; indicesToReDiscretize;</span></span>
<span id="L35"><span class="lineNum"> 35</span> <span class="tlaGNC"> 212 : bool upgrade = false; // Flag to check if we need to upgrade the model</span></span>
<span id="L36"><span class="lineNum"> 36</span> <span class="tlaGNC"> 1776 : for (auto feature : order) {</span></span>
<span id="L37"><span class="lineNum"> 37</span> <span class="tlaGNC"> 1564 : auto nodeParents = nodes[feature]-&gt;getParents();</span></span>
<span id="L38"><span class="lineNum"> 38</span> <span class="tlaGNC"> 1564 : if (nodeParents.size() &lt; 2) continue; // Only has class as parent</span></span>
<span id="L39"><span class="lineNum"> 39</span> <span class="tlaGNC"> 1324 : upgrade = true;</span></span>
<span id="L40"><span class="lineNum"> 40</span> <span class="tlaGNC"> 1324 : int index = find(pFeatures.begin(), pFeatures.end(), feature) - pFeatures.begin();</span></span>
<span id="L41"><span class="lineNum"> 41</span> <span class="tlaGNC"> 1324 : indicesToReDiscretize.push_back(index); // We need to re-discretize this feature</span></span>
<span id="L42"><span class="lineNum"> 42</span> <span class="tlaGNC"> 1324 : std::vector&lt;std::string&gt; parents;</span></span>
<span id="L43"><span class="lineNum"> 43</span> <span class="tlaGNC"> 4020 : transform(nodeParents.begin(), nodeParents.end(), back_inserter(parents), [](const auto&amp; p) { return p-&gt;getName(); });</span></span>
<span id="L44"><span class="lineNum"> 44</span> : // Remove class as parent as it will be added later</span>
<span id="L45"><span class="lineNum"> 45</span> <span class="tlaGNC"> 1324 : parents.erase(remove(parents.begin(), parents.end(), pClassName), parents.end());</span></span>
<span id="L46"><span class="lineNum"> 46</span> : // Get the indices of the parents</span>
<span id="L47"><span class="lineNum"> 47</span> <span class="tlaGNC"> 1324 : std::vector&lt;int&gt; indices;</span></span>
<span id="L48"><span class="lineNum"> 48</span> <span class="tlaGNC"> 1324 : indices.push_back(-1); // Add class index</span></span>
<span id="L49"><span class="lineNum"> 49</span> <span class="tlaGNC"> 2696 : transform(parents.begin(), parents.end(), back_inserter(indices), [&amp;](const auto&amp; p) {return find(pFeatures.begin(), pFeatures.end(), p) - pFeatures.begin(); });</span></span>
<span id="L50"><span class="lineNum"> 50</span> : // Now we fit the discretizer of the feature, conditioned on its parents and the class i.e. discretizer.fit(X[index], X[indices] + y)</span>
<span id="L51"><span class="lineNum"> 51</span> <span class="tlaGNC"> 1324 : std::vector&lt;std::string&gt; yJoinParents(Xf.size(1));</span></span>
<span id="L52"><span class="lineNum"> 52</span> <span class="tlaGNC"> 4020 : for (auto idx : indices) {</span></span>
<span id="L53"><span class="lineNum"> 53</span> <span class="tlaGNC"> 958640 : for (int i = 0; i &lt; Xf.size(1); ++i) {</span></span>
<span id="L54"><span class="lineNum"> 54</span> <span class="tlaGNC"> 2867832 : yJoinParents[i] += to_string(pDataset.index({ idx, i }).item&lt;int&gt;());</span></span>
<span id="L55"><span class="lineNum"> 55</span> : }</span>
<span id="L56"><span class="lineNum"> 56</span> : }</span>
<span id="L57"><span class="lineNum"> 57</span> <span class="tlaGNC"> 1324 : auto arff = ArffFiles();</span></span>
<span id="L58"><span class="lineNum"> 58</span> <span class="tlaGNC"> 1324 : auto yxv = arff.factorize(yJoinParents);</span></span>
<span id="L59"><span class="lineNum"> 59</span> <span class="tlaGNC"> 2648 : auto xvf_ptr = Xf.index({ index }).data_ptr&lt;float&gt;();</span></span>
<span id="L60"><span class="lineNum"> 60</span> <span class="tlaGNC"> 1324 : auto xvf = std::vector&lt;mdlp::precision_t&gt;(xvf_ptr, xvf_ptr + Xf.size(1));</span></span>
<span id="L61"><span class="lineNum"> 61</span> <span class="tlaGNC"> 1324 : discretizers[feature]-&gt;fit(xvf, yxv);</span></span>
<span id="L62"><span class="lineNum"> 62</span> <span class="tlaGNC"> 1804 : }</span></span>
<span id="L63"><span class="lineNum"> 63</span> <span class="tlaGNC"> 212 : if (upgrade) {</span></span>
<span id="L64"><span class="lineNum"> 64</span> : // Discretize again X (only the affected indices) with the new fitted discretizers</span>
<span id="L65"><span class="lineNum"> 65</span> <span class="tlaGNC"> 1536 : for (auto index : indicesToReDiscretize) {</span></span>
<span id="L66"><span class="lineNum"> 66</span> <span class="tlaGNC"> 2648 : auto Xt_ptr = Xf.index({ index }).data_ptr&lt;float&gt;();</span></span>
<span id="L67"><span class="lineNum"> 67</span> <span class="tlaGNC"> 1324 : auto Xt = std::vector&lt;float&gt;(Xt_ptr, Xt_ptr + Xf.size(1));</span></span>
<span id="L68"><span class="lineNum"> 68</span> <span class="tlaGNC"> 5296 : pDataset.index_put_({ index, &quot;...&quot; }, torch::tensor(discretizers[pFeatures[index]]-&gt;transform(Xt)));</span></span>
<span id="L69"><span class="lineNum"> 69</span> <span class="tlaGNC"> 1324 : auto xStates = std::vector&lt;int&gt;(discretizers[pFeatures[index]]-&gt;getCutPoints().size() + 1);</span></span>
<span id="L70"><span class="lineNum"> 70</span> <span class="tlaGNC"> 1324 : iota(xStates.begin(), xStates.end(), 0);</span></span>
<span id="L71"><span class="lineNum"> 71</span> : //Update new states of the feature/node</span>
<span id="L72"><span class="lineNum"> 72</span> <span class="tlaGNC"> 1324 : states[pFeatures[index]] = xStates;</span></span>
<span id="L73"><span class="lineNum"> 73</span> <span class="tlaGNC"> 1324 : }</span></span>
<span id="L74"><span class="lineNum"> 74</span> <span class="tlaGNC"> 212 : const torch::Tensor weights = torch::full({ pDataset.size(1) }, 1.0 / pDataset.size(1), torch::kDouble);</span></span>
<span id="L75"><span class="lineNum"> 75</span> <span class="tlaGNC"> 212 : model.fit(pDataset, weights, pFeatures, pClassName, states);</span></span>
<span id="L76"><span class="lineNum"> 76</span> <span class="tlaGNC"> 212 : }</span></span>
<span id="L77"><span class="lineNum"> 77</span> <span class="tlaGNC"> 424 : return states;</span></span>
<span id="L78"><span class="lineNum"> 78</span> <span class="tlaGNC"> 960128 : }</span></span>
<span id="L79"><span class="lineNum"> 79</span> <span class="tlaGNC"> 232 : map&lt;std::string, std::vector&lt;int&gt;&gt; Proposal::fit_local_discretization(const torch::Tensor&amp; y)</span></span>
<span id="L80"><span class="lineNum"> 80</span> : {</span>
<span id="L81"><span class="lineNum"> 81</span> : // Discretize the continuous input data and build pDataset (Classifier::dataset)</span>
<span id="L82"><span class="lineNum"> 82</span> <span class="tlaGNC"> 232 : int m = Xf.size(1);</span></span>
<span id="L83"><span class="lineNum"> 83</span> <span class="tlaGNC"> 232 : int n = Xf.size(0);</span></span>
<span id="L84"><span class="lineNum"> 84</span> <span class="tlaGNC"> 232 : map&lt;std::string, std::vector&lt;int&gt;&gt; states;</span></span>
<span id="L85"><span class="lineNum"> 85</span> <span class="tlaGNC"> 232 : pDataset = torch::zeros({ n + 1, m }, torch::kInt32);</span></span>
<span id="L86"><span class="lineNum"> 86</span> <span class="tlaGNC"> 232 : auto yv = std::vector&lt;int&gt;(y.data_ptr&lt;int&gt;(), y.data_ptr&lt;int&gt;() + y.size(0));</span></span>
<span id="L87"><span class="lineNum"> 87</span> : // discretize input data by feature(row)</span>
<span id="L88"><span class="lineNum"> 88</span> <span class="tlaGNC"> 1944 : for (auto i = 0; i &lt; pFeatures.size(); ++i) {</span></span>
<span id="L89"><span class="lineNum"> 89</span> <span class="tlaGNC"> 1712 : auto* discretizer = new mdlp::CPPFImdlp();</span></span>
<span id="L90"><span class="lineNum"> 90</span> <span class="tlaGNC"> 3424 : auto Xt_ptr = Xf.index({ i }).data_ptr&lt;float&gt;();</span></span>
<span id="L91"><span class="lineNum"> 91</span> <span class="tlaGNC"> 1712 : auto Xt = std::vector&lt;float&gt;(Xt_ptr, Xt_ptr + Xf.size(1));</span></span>
<span id="L92"><span class="lineNum"> 92</span> <span class="tlaGNC"> 1712 : discretizer-&gt;fit(Xt, yv);</span></span>
<span id="L93"><span class="lineNum"> 93</span> <span class="tlaGNC"> 6848 : pDataset.index_put_({ i, &quot;...&quot; }, torch::tensor(discretizer-&gt;transform(Xt)));</span></span>
<span id="L94"><span class="lineNum"> 94</span> <span class="tlaGNC"> 1712 : auto xStates = std::vector&lt;int&gt;(discretizer-&gt;getCutPoints().size() + 1);</span></span>
<span id="L95"><span class="lineNum"> 95</span> <span class="tlaGNC"> 1712 : iota(xStates.begin(), xStates.end(), 0);</span></span>
<span id="L96"><span class="lineNum"> 96</span> <span class="tlaGNC"> 1712 : states[pFeatures[i]] = xStates;</span></span>
<span id="L97"><span class="lineNum"> 97</span> <span class="tlaGNC"> 1712 : discretizers[pFeatures[i]] = discretizer;</span></span>
<span id="L98"><span class="lineNum"> 98</span> <span class="tlaGNC"> 1712 : }</span></span>
<span id="L99"><span class="lineNum"> 99</span> <span class="tlaGNC"> 232 : int n_classes = torch::max(y).item&lt;int&gt;() + 1;</span></span>
<span id="L100"><span class="lineNum"> 100</span> <span class="tlaGNC"> 232 : auto yStates = std::vector&lt;int&gt;(n_classes);</span></span>
<span id="L101"><span class="lineNum"> 101</span> <span class="tlaGNC"> 232 : iota(yStates.begin(), yStates.end(), 0);</span></span>
<span id="L102"><span class="lineNum"> 102</span> <span class="tlaGNC"> 232 : states[pClassName] = yStates;</span></span>
<span id="L103"><span class="lineNum"> 103</span> <span class="tlaGNC"> 696 : pDataset.index_put_({ n, &quot;...&quot; }, y);</span></span>
<span id="L104"><span class="lineNum"> 104</span> <span class="tlaGNC"> 464 : return states;</span></span>
<span id="L105"><span class="lineNum"> 105</span> <span class="tlaGNC"> 3888 : }</span></span>
<span id="L106"><span class="lineNum"> 106</span> <span class="tlaGNC"> 168 : torch::Tensor Proposal::prepareX(torch::Tensor&amp; X)</span></span>
<span id="L107"><span class="lineNum"> 107</span> : {</span>
<span id="L108"><span class="lineNum"> 108</span> <span class="tlaGNC"> 168 : auto Xtd = torch::zeros_like(X, torch::kInt32);</span></span>
<span id="L109"><span class="lineNum"> 109</span> <span class="tlaGNC"> 1376 : for (int i = 0; i &lt; X.size(0); ++i) {</span></span>
<span id="L110"><span class="lineNum"> 110</span> <span class="tlaGNC"> 1208 : auto Xt = std::vector&lt;float&gt;(X[i].data_ptr&lt;float&gt;(), X[i].data_ptr&lt;float&gt;() + X.size(1));</span></span>
<span id="L111"><span class="lineNum"> 111</span> <span class="tlaGNC"> 1208 : auto Xd = discretizers[pFeatures[i]]-&gt;transform(Xt);</span></span>
<span id="L112"><span class="lineNum"> 112</span> <span class="tlaGNC"> 3624 : Xtd.index_put_({ i }, torch::tensor(Xd, torch::kInt32));</span></span>
<span id="L113"><span class="lineNum"> 113</span> <span class="tlaGNC"> 1208 : }</span></span>
<span id="L114"><span class="lineNum"> 114</span> <span class="tlaGNC"> 336 : return Xtd;</span></span>
<span id="L115"><span class="lineNum"> 115</span> <span class="tlaGNC"> 1376 : }</span></span>
<span id="L116"><span class="lineNum"> 116</span> : }</span>
</pre>
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<td width="5%" class="headerCovTableHead" title="Exercised code only">Hit</td>
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<td class="headerValue">BayesNet Coverage Report</td>
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<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">10</td>
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<td class="headerValue">2024-05-06 17:54:04</td>
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<td class="headerItem">Functions:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">3</td>
<td class="headerCovTableEntry">3</td>
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<td class="headerItem">Legend:</td>
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<span class="coverLegendCov">hit</span>
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<td class="coverFn"><a href="SPODE.cc.gcov.html#L24">bayesnet::SPODE::graph(std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;) const</a></td>
<td class="coverFnHi">68</td>
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<td class="coverFn"><a href="SPODE.cc.gcov.html#L11">bayesnet::SPODE::buildModel(at::Tensor const&amp;)</a></td>
<td class="coverFnHi">1016</td>
</tr>
<tr>
<td class="coverFn"><a href="SPODE.cc.gcov.html#L9">bayesnet::SPODE::SPODE(int)</a></td>
<td class="coverFnHi">1124</td>
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<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">3</td>
<td class="headerCovTableEntry">3</td>
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<td class="coverFn"><a href="SPODE.cc.gcov.html#L9">bayesnet::SPODE::SPODE(int)</a></td>
<td class="coverFnHi">1124</td>
</tr>
<tr>
<td class="coverFn"><a href="SPODE.cc.gcov.html#L11">bayesnet::SPODE::buildModel(at::Tensor const&amp;)</a></td>
<td class="coverFnHi">1016</td>
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<td class="coverFn"><a href="SPODE.cc.gcov.html#L24">bayesnet::SPODE::graph(std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;) const</a></td>
<td class="coverFnHi">68</td>
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<td width="5%" class="headerCovTableHead" title="Exercised code only">Hit</td>
</tr>
<tr>
<td class="headerItem">Test:</td>
<td class="headerValue">BayesNet Coverage Report</td>
<td></td>
<td class="headerItem">Lines:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">10</td>
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<td class="headerItem">Test Date:</td>
<td class="headerValue">2024-05-06 17:54:04</td>
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<td class="headerItem">Functions:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">3</td>
<td class="headerCovTableEntry">3</td>
</tr>
<tr>
<td class="headerItem">Legend:</td>
<td class="headerValueLeg"> Lines:
<span class="coverLegendCov">hit</span>
<span class="coverLegendNoCov">not hit</span>
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<pre class="sourceHeading"> Line data Source code</pre>
<pre class="source">
<span id="L1"><span class="lineNum"> 1</span> : // ***************************************************************</span>
<span id="L2"><span class="lineNum"> 2</span> : // SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez</span>
<span id="L3"><span class="lineNum"> 3</span> : // SPDX-FileType: SOURCE</span>
<span id="L4"><span class="lineNum"> 4</span> : // SPDX-License-Identifier: MIT</span>
<span id="L5"><span class="lineNum"> 5</span> : // ***************************************************************</span>
<span id="L6"><span class="lineNum"> 6</span> : </span>
<span id="L7"><span class="lineNum"> 7</span> : #include &quot;SPODE.h&quot;</span>
<span id="L8"><span class="lineNum"> 8</span> : </span>
<span id="L9"><span class="lineNum"> 9</span> : namespace bayesnet {</span>
<span id="L10"><span class="lineNum"> 10</span> : </span>
<span id="L11"><span class="lineNum"> 11</span> <span class="tlaGNC tlaBgGNC"> 1124 : SPODE::SPODE(int root) : Classifier(Network()), root(root) {}</span></span>
<span id="L12"><span class="lineNum"> 12</span> : </span>
<span id="L13"><span class="lineNum"> 13</span> <span class="tlaGNC"> 1016 : void SPODE::buildModel(const torch::Tensor&amp; weights)</span></span>
<span id="L14"><span class="lineNum"> 14</span> : {</span>
<span id="L15"><span class="lineNum"> 15</span> : // 0. Add all nodes to the model</span>
<span id="L16"><span class="lineNum"> 16</span> <span class="tlaGNC"> 1016 : addNodes();</span></span>
<span id="L17"><span class="lineNum"> 17</span> : // 1. Add edges from the class node to all other nodes</span>
<span id="L18"><span class="lineNum"> 18</span> : // 2. Add edges from the root node to all other nodes</span>
<span id="L19"><span class="lineNum"> 19</span> <span class="tlaGNC"> 25680 : for (int i = 0; i &lt; static_cast&lt;int&gt;(features.size()); ++i) {</span></span>
<span id="L20"><span class="lineNum"> 20</span> <span class="tlaGNC"> 24664 : model.addEdge(className, features[i]);</span></span>
<span id="L21"><span class="lineNum"> 21</span> <span class="tlaGNC"> 24664 : if (i != root) {</span></span>
<span id="L22"><span class="lineNum"> 22</span> <span class="tlaGNC"> 23648 : model.addEdge(features[root], features[i]);</span></span>
<span id="L23"><span class="lineNum"> 23</span> : }</span>
<span id="L24"><span class="lineNum"> 24</span> : }</span>
<span id="L25"><span class="lineNum"> 25</span> <span class="tlaGNC"> 1016 : }</span></span>
<span id="L26"><span class="lineNum"> 26</span> <span class="tlaGNC"> 68 : std::vector&lt;std::string&gt; SPODE::graph(const std::string&amp; name) const</span></span>
<span id="L27"><span class="lineNum"> 27</span> : {</span>
<span id="L28"><span class="lineNum"> 28</span> <span class="tlaGNC"> 68 : return model.graph(name);</span></span>
<span id="L29"><span class="lineNum"> 29</span> : }</span>
<span id="L30"><span class="lineNum"> 30</span> : </span>
<span id="L31"><span class="lineNum"> 31</span> : }</span>
</pre>
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<td class="coverFn"><a href="SPODE.h.gcov.html#L17">bayesnet::SPODE::~SPODE()</a></td>
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<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
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<td class="coverFn"><a href="SPODE.h.gcov.html#L17">bayesnet::SPODE::~SPODE()</a></td>
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<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
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<pre class="sourceHeading"> Line data Source code</pre>
<pre class="source">
<span id="L1"><span class="lineNum"> 1</span> : // ***************************************************************</span>
<span id="L2"><span class="lineNum"> 2</span> : // SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez</span>
<span id="L3"><span class="lineNum"> 3</span> : // SPDX-FileType: SOURCE</span>
<span id="L4"><span class="lineNum"> 4</span> : // SPDX-License-Identifier: MIT</span>
<span id="L5"><span class="lineNum"> 5</span> : // ***************************************************************</span>
<span id="L6"><span class="lineNum"> 6</span> : </span>
<span id="L7"><span class="lineNum"> 7</span> : #ifndef SPODE_H</span>
<span id="L8"><span class="lineNum"> 8</span> : #define SPODE_H</span>
<span id="L9"><span class="lineNum"> 9</span> : #include &quot;Classifier.h&quot;</span>
<span id="L10"><span class="lineNum"> 10</span> : </span>
<span id="L11"><span class="lineNum"> 11</span> : namespace bayesnet {</span>
<span id="L12"><span class="lineNum"> 12</span> : class SPODE : public Classifier {</span>
<span id="L13"><span class="lineNum"> 13</span> : private:</span>
<span id="L14"><span class="lineNum"> 14</span> : int root;</span>
<span id="L15"><span class="lineNum"> 15</span> : protected:</span>
<span id="L16"><span class="lineNum"> 16</span> : void buildModel(const torch::Tensor&amp; weights) override;</span>
<span id="L17"><span class="lineNum"> 17</span> : public:</span>
<span id="L18"><span class="lineNum"> 18</span> : explicit SPODE(int root);</span>
<span id="L19"><span class="lineNum"> 19</span> <span class="tlaGNC tlaBgGNC"> 1836 : virtual ~SPODE() = default;</span></span>
<span id="L20"><span class="lineNum"> 20</span> : std::vector&lt;std::string&gt; graph(const std::string&amp; name = &quot;SPODE&quot;) const override;</span>
<span id="L21"><span class="lineNum"> 21</span> : };</span>
<span id="L22"><span class="lineNum"> 22</span> : }</span>
<span id="L23"><span class="lineNum"> 23</span> : #endif</span>
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<td class="headerItem">Test:</td>
<td class="headerValue">BayesNet Coverage Report</td>
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<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">26</td>
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<td class="headerItem">Test Date:</td>
<td class="headerValue">2024-05-06 17:54:04</td>
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<td class="headerItem">Functions:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">6</td>
<td class="headerCovTableEntry">6</td>
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<td class="coverFn"><a href="SPODELd.cc.gcov.html#L17">bayesnet::SPODELd::fit(at::Tensor&amp;, std::vector&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::allocator&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt; &gt; const&amp;, std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;, std::map&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::less&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt;, std::allocator&lt;std::pair&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const, std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt; &gt;&amp;)</a></td>
<td class="coverFnHi">8</td>
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<td class="coverFn"><a href="SPODELd.cc.gcov.html#L44">bayesnet::SPODELd::graph(std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;) const</a></td>
<td class="coverFnHi">36</td>
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<td class="coverFn"><a href="SPODELd.cc.gcov.html#L39">bayesnet::SPODELd::predict(at::Tensor&amp;)</a></td>
<td class="coverFnHi">136</td>
</tr>
<tr>
<td class="coverFn"><a href="SPODELd.cc.gcov.html#L9">bayesnet::SPODELd::fit(at::Tensor&amp;, at::Tensor&amp;, std::vector&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::allocator&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt; &gt; const&amp;, std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;, std::map&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::less&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt;, std::allocator&lt;std::pair&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const, std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt; &gt;&amp;)</a></td>
<td class="coverFnHi">168</td>
</tr>
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<td class="coverFn"><a href="SPODELd.cc.gcov.html#L27">bayesnet::SPODELd::commonFit(std::vector&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::allocator&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt; &gt; const&amp;, std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;, std::map&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::less&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt;, std::allocator&lt;std::pair&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const, std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt; &gt;&amp;)</a></td>
<td class="coverFnHi">172</td>
</tr>
<tr>
<td class="coverFn"><a href="SPODELd.cc.gcov.html#L8">bayesnet::SPODELd::SPODELd(int)</a></td>
<td class="coverFnHi">220</td>
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<td width="5%" class="headerCovTableHead" title="Exercised code only">Hit</td>
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<td class="headerItem">Test:</td>
<td class="headerValue">BayesNet Coverage Report</td>
<td></td>
<td class="headerItem">Lines:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">26</td>
<td class="headerCovTableEntry">26</td>
</tr>
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<td class="headerItem">Test Date:</td>
<td class="headerValue">2024-05-06 17:54:04</td>
<td></td>
<td class="headerItem">Functions:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">6</td>
<td class="headerCovTableEntry">6</td>
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<span class="coverLegendCov">hit</span>
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<td class="coverFn"><a href="SPODELd.cc.gcov.html#L8">bayesnet::SPODELd::SPODELd(int)</a></td>
<td class="coverFnHi">220</td>
</tr>
<tr>
<td class="coverFn"><a href="SPODELd.cc.gcov.html#L27">bayesnet::SPODELd::commonFit(std::vector&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::allocator&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt; &gt; const&amp;, std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;, std::map&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::less&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt;, std::allocator&lt;std::pair&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const, std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt; &gt;&amp;)</a></td>
<td class="coverFnHi">172</td>
</tr>
<tr>
<td class="coverFn"><a href="SPODELd.cc.gcov.html#L9">bayesnet::SPODELd::fit(at::Tensor&amp;, at::Tensor&amp;, std::vector&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::allocator&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt; &gt; const&amp;, std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;, std::map&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::less&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt;, std::allocator&lt;std::pair&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const, std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt; &gt;&amp;)</a></td>
<td class="coverFnHi">168</td>
</tr>
<tr>
<td class="coverFn"><a href="SPODELd.cc.gcov.html#L17">bayesnet::SPODELd::fit(at::Tensor&amp;, std::vector&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::allocator&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt; &gt; const&amp;, std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;, std::map&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt;, std::vector&lt;int, std::allocator&lt;int&gt; &gt;, std::less&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; &gt;, std::allocator&lt;std::pair&lt;std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const, std::vector&lt;int, std::allocator&lt;int&gt; &gt; &gt; &gt; &gt;&amp;)</a></td>
<td class="coverFnHi">8</td>
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<td class="coverFn"><a href="SPODELd.cc.gcov.html#L44">bayesnet::SPODELd::graph(std::__cxx11::basic_string&lt;char, std::char_traits&lt;char&gt;, std::allocator&lt;char&gt; &gt; const&amp;) const</a></td>
<td class="coverFnHi">36</td>
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<td class="coverFn"><a href="SPODELd.cc.gcov.html#L39">bayesnet::SPODELd::predict(at::Tensor&amp;)</a></td>
<td class="coverFnHi">136</td>
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<td width="5%" class="headerCovTableHead">Coverage</td>
<td width="5%" class="headerCovTableHead" title="Covered + Uncovered code">Total</td>
<td width="5%" class="headerCovTableHead" title="Exercised code only">Hit</td>
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<td class="headerItem">Test:</td>
<td class="headerValue">BayesNet Coverage Report</td>
<td></td>
<td class="headerItem">Lines:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">26</td>
<td class="headerCovTableEntry">26</td>
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<td class="headerItem">Test Date:</td>
<td class="headerValue">2024-05-06 17:54:04</td>
<td></td>
<td class="headerItem">Functions:</td>
<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">6</td>
<td class="headerCovTableEntry">6</td>
</tr>
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<pre class="sourceHeading"> Line data Source code</pre>
<pre class="source">
<span id="L1"><span class="lineNum"> 1</span> : // ***************************************************************</span>
<span id="L2"><span class="lineNum"> 2</span> : // SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez</span>
<span id="L3"><span class="lineNum"> 3</span> : // SPDX-FileType: SOURCE</span>
<span id="L4"><span class="lineNum"> 4</span> : // SPDX-License-Identifier: MIT</span>
<span id="L5"><span class="lineNum"> 5</span> : // ***************************************************************</span>
<span id="L6"><span class="lineNum"> 6</span> : </span>
<span id="L7"><span class="lineNum"> 7</span> : #include &quot;SPODELd.h&quot;</span>
<span id="L8"><span class="lineNum"> 8</span> : </span>
<span id="L9"><span class="lineNum"> 9</span> : namespace bayesnet {</span>
<span id="L10"><span class="lineNum"> 10</span> <span class="tlaGNC tlaBgGNC"> 220 : SPODELd::SPODELd(int root) : SPODE(root), Proposal(dataset, features, className) {}</span></span>
<span id="L11"><span class="lineNum"> 11</span> <span class="tlaGNC"> 168 : SPODELd&amp; SPODELd::fit(torch::Tensor&amp; X_, torch::Tensor&amp; y_, const std::vector&lt;std::string&gt;&amp; features_, const std::string&amp; className_, map&lt;std::string, std::vector&lt;int&gt;&gt;&amp; states_)</span></span>
<span id="L12"><span class="lineNum"> 12</span> : {</span>
<span id="L13"><span class="lineNum"> 13</span> <span class="tlaGNC"> 168 : checkInput(X_, y_);</span></span>
<span id="L14"><span class="lineNum"> 14</span> <span class="tlaGNC"> 168 : Xf = X_;</span></span>
<span id="L15"><span class="lineNum"> 15</span> <span class="tlaGNC"> 168 : y = y_;</span></span>
<span id="L16"><span class="lineNum"> 16</span> <span class="tlaGNC"> 168 : return commonFit(features_, className_, states_);</span></span>
<span id="L17"><span class="lineNum"> 17</span> : }</span>
<span id="L18"><span class="lineNum"> 18</span> : </span>
<span id="L19"><span class="lineNum"> 19</span> <span class="tlaGNC"> 8 : SPODELd&amp; SPODELd::fit(torch::Tensor&amp; dataset, const std::vector&lt;std::string&gt;&amp; features_, const std::string&amp; className_, map&lt;std::string, std::vector&lt;int&gt;&gt;&amp; states_)</span></span>
<span id="L20"><span class="lineNum"> 20</span> : {</span>
<span id="L21"><span class="lineNum"> 21</span> <span class="tlaGNC"> 8 : if (!torch::is_floating_point(dataset)) {</span></span>
<span id="L22"><span class="lineNum"> 22</span> <span class="tlaGNC"> 4 : throw std::runtime_error(&quot;Dataset must be a floating point tensor&quot;);</span></span>
<span id="L23"><span class="lineNum"> 23</span> : }</span>
<span id="L24"><span class="lineNum"> 24</span> <span class="tlaGNC"> 16 : Xf = dataset.index({ torch::indexing::Slice(0, dataset.size(0) - 1), &quot;...&quot; }).clone();</span></span>
<span id="L25"><span class="lineNum"> 25</span> <span class="tlaGNC"> 12 : y = dataset.index({ -1, &quot;...&quot; }).clone().to(torch::kInt32);</span></span>
<span id="L26"><span class="lineNum"> 26</span> <span class="tlaGNC"> 4 : return commonFit(features_, className_, states_);</span></span>
<span id="L27"><span class="lineNum"> 27</span> <span class="tlaGNC"> 12 : }</span></span>
<span id="L28"><span class="lineNum"> 28</span> : </span>
<span id="L29"><span class="lineNum"> 29</span> <span class="tlaGNC"> 172 : SPODELd&amp; SPODELd::commonFit(const std::vector&lt;std::string&gt;&amp; features_, const std::string&amp; className_, map&lt;std::string, std::vector&lt;int&gt;&gt;&amp; states_)</span></span>
<span id="L30"><span class="lineNum"> 30</span> : {</span>
<span id="L31"><span class="lineNum"> 31</span> <span class="tlaGNC"> 172 : features = features_;</span></span>
<span id="L32"><span class="lineNum"> 32</span> <span class="tlaGNC"> 172 : className = className_;</span></span>
<span id="L33"><span class="lineNum"> 33</span> : // Fills std::vectors Xv &amp; yv with the data from tensors X_ (discretized) &amp; y</span>
<span id="L34"><span class="lineNum"> 34</span> <span class="tlaGNC"> 172 : states = fit_local_discretization(y);</span></span>
<span id="L35"><span class="lineNum"> 35</span> : // We have discretized the input data</span>
<span id="L36"><span class="lineNum"> 36</span> : // 1st we need to fit the model to build the normal SPODE structure, SPODE::fit initializes the base Bayesian network</span>
<span id="L37"><span class="lineNum"> 37</span> <span class="tlaGNC"> 172 : SPODE::fit(dataset, features, className, states);</span></span>
<span id="L38"><span class="lineNum"> 38</span> <span class="tlaGNC"> 172 : states = localDiscretizationProposal(states, model);</span></span>
<span id="L39"><span class="lineNum"> 39</span> <span class="tlaGNC"> 172 : return *this;</span></span>
<span id="L40"><span class="lineNum"> 40</span> : }</span>
<span id="L41"><span class="lineNum"> 41</span> <span class="tlaGNC"> 136 : torch::Tensor SPODELd::predict(torch::Tensor&amp; X)</span></span>
<span id="L42"><span class="lineNum"> 42</span> : {</span>
<span id="L43"><span class="lineNum"> 43</span> <span class="tlaGNC"> 136 : auto Xt = prepareX(X);</span></span>
<span id="L44"><span class="lineNum"> 44</span> <span class="tlaGNC"> 272 : return SPODE::predict(Xt);</span></span>
<span id="L45"><span class="lineNum"> 45</span> <span class="tlaGNC"> 136 : }</span></span>
<span id="L46"><span class="lineNum"> 46</span> <span class="tlaGNC"> 36 : std::vector&lt;std::string&gt; SPODELd::graph(const std::string&amp; name) const</span></span>
<span id="L47"><span class="lineNum"> 47</span> : {</span>
<span id="L48"><span class="lineNum"> 48</span> <span class="tlaGNC"> 36 : return SPODE::graph(name);</span></span>
<span id="L49"><span class="lineNum"> 49</span> : }</span>
<span id="L50"><span class="lineNum"> 50</span> : }</span>
</pre>
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<td class="headerCovTableEntryHi">100.0&nbsp;%</td>
<td class="headerCovTableEntry">1</td>
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<td class="coverFn"><a href="SPODELd.h.gcov.html#L14">bayesnet::SPODELd::~SPODELd()</a></td>
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<td class="coverFn"><a href="SPODELd.h.gcov.html#L14">bayesnet::SPODELd::~SPODELd()</a></td>
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<pre class="sourceHeading"> Line data Source code</pre>
<pre class="source">
<span id="L1"><span class="lineNum"> 1</span> : // ***************************************************************</span>
<span id="L2"><span class="lineNum"> 2</span> : // SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez</span>
<span id="L3"><span class="lineNum"> 3</span> : // SPDX-FileType: SOURCE</span>
<span id="L4"><span class="lineNum"> 4</span> : // SPDX-License-Identifier: MIT</span>
<span id="L5"><span class="lineNum"> 5</span> : // ***************************************************************</span>
<span id="L6"><span class="lineNum"> 6</span> : </span>
<span id="L7"><span class="lineNum"> 7</span> : #ifndef SPODELD_H</span>
<span id="L8"><span class="lineNum"> 8</span> : #define SPODELD_H</span>
<span id="L9"><span class="lineNum"> 9</span> : #include &quot;SPODE.h&quot;</span>
<span id="L10"><span class="lineNum"> 10</span> : #include &quot;Proposal.h&quot;</span>
<span id="L11"><span class="lineNum"> 11</span> : </span>
<span id="L12"><span class="lineNum"> 12</span> : namespace bayesnet {</span>
<span id="L13"><span class="lineNum"> 13</span> : class SPODELd : public SPODE, public Proposal {</span>
<span id="L14"><span class="lineNum"> 14</span> : public:</span>
<span id="L15"><span class="lineNum"> 15</span> : explicit SPODELd(int root);</span>
<span id="L16"><span class="lineNum"> 16</span> <span class="tlaGNC tlaBgGNC"> 320 : virtual ~SPODELd() = default;</span></span>
<span id="L17"><span class="lineNum"> 17</span> : SPODELd&amp; fit(torch::Tensor&amp; X, torch::Tensor&amp; y, const std::vector&lt;std::string&gt;&amp; features, const std::string&amp; className, map&lt;std::string, std::vector&lt;int&gt;&gt;&amp; states) override;</span>
<span id="L18"><span class="lineNum"> 18</span> : SPODELd&amp; fit(torch::Tensor&amp; dataset, const std::vector&lt;std::string&gt;&amp; features, const std::string&amp; className, map&lt;std::string, std::vector&lt;int&gt;&gt;&amp; states) override;</span>
<span id="L19"><span class="lineNum"> 19</span> : SPODELd&amp; commonFit(const std::vector&lt;std::string&gt;&amp; features, const std::string&amp; className, map&lt;std::string, std::vector&lt;int&gt;&gt;&amp; states);</span>
<span id="L20"><span class="lineNum"> 20</span> : std::vector&lt;std::string&gt; graph(const std::string&amp; name = &quot;SPODE&quot;) const override;</span>
<span id="L21"><span class="lineNum"> 21</span> : torch::Tensor predict(torch::Tensor&amp; X) override;</span>
<span id="L22"><span class="lineNum"> 22</span> : static inline std::string version() { return &quot;0.0.1&quot;; };</span>
<span id="L23"><span class="lineNum"> 23</span> : };</span>
<span id="L24"><span class="lineNum"> 24</span> : }</span>
<span id="L25"><span class="lineNum"> 25</span> : #endif // !SPODELD_H</span>
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