Fix some issues in FeatureSelect

Reviewed-on: #35

.clang-format

@@ -0,0 +1,10 @@
+# .clang-format
+---
+BasedOnStyle: LLVM
+AccessModifierOffset: -4
+BreakBeforeBraces: Linux
+ColumnLimit: 0
+FixNamespaceComments: false
+IndentWidth: 4
+NamespaceIndentation: All
+TabWidth: 4

.clang-uml

@@ -1,4 +1,4 @@
-compilation_database_dir: build_debug
+compilation_database_dir: build_Debug
 output_directory: diagrams
 diagrams:
   BayesNet:

.devcontainer/Dockerfile

@@ -0,0 +1,57 @@
+FROM mcr.microsoft.com/devcontainers/cpp:ubuntu22.04
+
+ARG REINSTALL_CMAKE_VERSION_FROM_SOURCE="3.29.3"
+
+# Optionally install the cmake for vcpkg
+COPY ./reinstall-cmake.sh /tmp/
+
+RUN if [ "${REINSTALL_CMAKE_VERSION_FROM_SOURCE}" != "none" ]; then \
+    chmod +x /tmp/reinstall-cmake.sh && /tmp/reinstall-cmake.sh ${REINSTALL_CMAKE_VERSION_FROM_SOURCE}; \
+    fi \
+    && rm -f /tmp/reinstall-cmake.sh
+
+
+# [Optional] Uncomment this section to install additional vcpkg ports.
+# RUN su vscode -c "${VCPKG_ROOT}/vcpkg install <your-port-name-here>"
+
+# [Optional] Uncomment this section to install additional packages.
+RUN apt-get update && export DEBIAN_FRONTEND=noninteractive \
+    && apt-get -y install --no-install-recommends wget software-properties-common libdatetime-perl libcapture-tiny-perl libdatetime-format-dateparse-perl libgd-perl
+
+# Add PPA for GCC 13
+RUN add-apt-repository ppa:ubuntu-toolchain-r/test
+RUN apt-get update
+
+# Install GCC 13.1
+RUN apt-get install -y gcc-13 g++-13 doxygen
+
+# Install lcov 2.1
+RUN wget --quiet https://github.com/linux-test-project/lcov/releases/download/v2.1/lcov-2.1.tar.gz && \
+    tar -xvf lcov-2.1.tar.gz && \
+    cd lcov-2.1 && \
+    make install
+RUN rm lcov-2.1.tar.gz
+RUN rm -fr lcov-2.1
+
+# Install Miniconda
+RUN mkdir -p /opt/conda 
+RUN wget --quiet "https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-aarch64.sh" -O /opt/conda/miniconda.sh && \
+    bash /opt/conda/miniconda.sh -b -p /opt/miniconda
+
+# Add conda to PATH
+ENV PATH=/opt/miniconda/bin:$PATH
+
+# add CXX and CC to the environment with gcc 13
+ENV CXX=/usr/bin/g++-13
+ENV CC=/usr/bin/gcc-13
+
+# link the last gcov version
+RUN rm /usr/bin/gcov
+RUN ln -s /usr/bin/gcov-13 /usr/bin/gcov
+
+# change ownership of /opt/miniconda to vscode user
+RUN chown -R vscode:vscode /opt/miniconda
+
+USER vscode
+RUN conda init
+RUN conda install -y -c conda-forge yaml pytorch

.devcontainer/devcontainer.json

@@ -0,0 +1,37 @@
+// For format details, see https://aka.ms/devcontainer.json. For config options, see the
+// README at: https://github.com/devcontainers/templates/tree/main/src/cpp
+{
+	"name": "C++",
+	"build": {
+		"dockerfile": "Dockerfile"
+	},
+	// "features": {
+	// 	"ghcr.io/devcontainers/features/conda:1": {}
+	// }
+	// Features to add to the dev container. More info: https://containers.dev/features.
+	// "features": {},
+	// Use 'forwardPorts' to make a list of ports inside the container available locally.
+	// "forwardPorts": [],
+	// Use 'postCreateCommand' to run commands after the container is created.
+	"postCreateCommand": "make release && make debug && echo 'Done!'",
+	// Configure tool-specific properties.
+	// "customizations": {},
+	"customizations": {
+		// Configure properties specific to VS Code.
+		"vscode": {
+			"settings": {},
+			"extensions": [
+				"ms-vscode.cpptools",
+				"ms-vscode.cpptools-extension-pack",
+				"ms-vscode.cpptools-themes",
+				"ms-vscode.cmake-tools",
+				"ms-azuretools.vscode-docker",
+				"jbenden.c-cpp-flylint",
+				"matepek.vscode-catch2-test-adapter",
+				"GitHub.copilot"
+			]
+		}
+	}
+	// Uncomment to connect as root instead. More info: https://aka.ms/dev-containers-non-root.
+	// "remoteUser": "root"
+}

.devcontainer/reinstall-cmake.sh

@@ -0,0 +1,59 @@
+#!/usr/bin/env bash
+#-------------------------------------------------------------------------------------------------------------
+# Copyright (c) Microsoft Corporation. All rights reserved.
+# Licensed under the MIT License. See https://go.microsoft.com/fwlink/?linkid=2090316 for license information.
+#-------------------------------------------------------------------------------------------------------------
+#
+set -e
+
+CMAKE_VERSION=${1:-"none"}
+
+if [ "${CMAKE_VERSION}" = "none" ]; then
+    echo "No CMake version specified, skipping CMake reinstallation"
+    exit 0
+fi
+
+# Cleanup temporary directory and associated files when exiting the script.
+cleanup() {
+    EXIT_CODE=$?
+    set +e
+    if [[ -n "${TMP_DIR}" ]]; then
+        echo "Executing cleanup of tmp files"
+        rm -Rf "${TMP_DIR}"
+    fi
+    exit $EXIT_CODE
+}
+trap cleanup EXIT
+
+
+echo "Installing CMake..."
+apt-get -y purge --auto-remove cmake
+mkdir -p /opt/cmake
+
+architecture=$(dpkg --print-architecture)
+case "${architecture}" in
+    arm64)
+        ARCH=aarch64 ;;
+    amd64)
+        ARCH=x86_64 ;;
+    *)
+        echo "Unsupported architecture ${architecture}."
+        exit 1
+        ;;
+esac
+
+CMAKE_BINARY_NAME="cmake-${CMAKE_VERSION}-linux-${ARCH}.sh"
+CMAKE_CHECKSUM_NAME="cmake-${CMAKE_VERSION}-SHA-256.txt"
+TMP_DIR=$(mktemp -d -t cmake-XXXXXXXXXX)
+
+echo "${TMP_DIR}"
+cd "${TMP_DIR}"
+
+curl -sSL "https://github.com/Kitware/CMake/releases/download/v${CMAKE_VERSION}/${CMAKE_BINARY_NAME}" -O
+curl -sSL "https://github.com/Kitware/CMake/releases/download/v${CMAKE_VERSION}/${CMAKE_CHECKSUM_NAME}" -O
+
+sha256sum -c --ignore-missing "${CMAKE_CHECKSUM_NAME}"
+sh "${TMP_DIR}/${CMAKE_BINARY_NAME}" --prefix=/opt/cmake --skip-license
+
+ln -s /opt/cmake/bin/cmake /usr/local/bin/cmake
+ln -s /opt/cmake/bin/ctest /usr/local/bin/ctest

.github/dependabot.yml

@@ -0,0 +1,12 @@
+# To get started with Dependabot version updates, you'll need to specify which
+# package ecosystems to update and where the package manifests are located.
+# Please see the documentation for more information:
+# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+# https://containers.dev/guide/dependabot
+
+version: 2
+updates:
+ - package-ecosystem: "devcontainers"
+   directory: "/"
+   schedule:
+     interval: weekly

.github/workflows/main.yml

@@ -1,12 +0,0 @@
-name: CI
-on: push
-
-jobs:
-  tests:
-    runs-on: ubuntu-latest
-    steps:
-    - uses: actions/checkout@v2
-    - run: sudo apt-get install ninja-build cmake
-    - run: ninja --version
-    - run: cmake --version
-    - run: g++ --version

.gitignore

@@ -39,4 +39,10 @@ cmake-build*/**
 puml/**
 .vscode/settings.json
 sample/build
-
+**/.DS_Store
+docs/manual
+docs/man3
+docs/man
+docs/Doxyfile
+.cache
+vcpkg_installed

.gitmodules

@@ -1,20 +0,0 @@
-[submodule "lib/mdlp"]
-	path = lib/mdlp
-	url = https://github.com/rmontanana/mdlp
-	main = main
-	update = merge
-[submodule "lib/catch2"]
-	path = lib/catch2
-    main  = v2.x
-	update = merge
-	url = https://github.com/catchorg/Catch2.git
-[submodule "lib/json"]
-	path = lib/json
-	url = https://github.com/nlohmann/json.git
-    master = master
-	update = merge
-[submodule "lib/folding"]
-	path = lib/folding
-	url = https://github.com/rmontanana/folding
-	main = main
-	update = merge

.sonarlint/connectedMode.json

@@ -0,0 +1,4 @@
+{
+    "sonarCloudOrganization": "rmontanana",
+    "projectKey": "rmontanana_BayesNet"
+}

.vscode/launch.json

@@ -5,7 +5,7 @@
             "type": "lldb",
             "request": "launch",
             "name": "sample",
-            "program": "${workspaceFolder}/build_release/sample/bayesnet_sample",
+            "program": "${workspaceFolder}/sample/build/bayesnet_sample",
             "args": [
                 "${workspaceFolder}/tests/data/glass.arff"
             ]
@@ -14,11 +14,11 @@
             "type": "lldb",
             "request": "launch",
             "name": "test",
-            "program": "${workspaceFolder}/build_debug/tests/TestBayesNet",
+            "program": "${workspaceFolder}/build_Debug/tests/TestBayesNet",
             "args": [
-                "Block Update"
+                "[XBAODE]"
             ],
-            "cwd": "${workspaceFolder}/build_debug/tests"
+            "cwd": "${workspaceFolder}/build_Debug/tests"
         },
         {
             "name": "(gdb) Launch",

CHANGELOG.md

@@ -5,6 +5,85 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [Unreleased]
+
+## [1.1.0] - 2025-04-27
+
+### Internal
+
+- Add changes to .clang-format to ajust to vscode format style thanks to <https://clang-format-configurator.site/>
+- Remove all the dependencies as git submodules and add them as vcpkg dependencies.
+- Fix the dependencies versions for this specific BayesNet version.
+
+## [1.0.7] 2025-03-16
+
+### Added
+
+- A new hyperparameter to the BoostAODE class, *alphablock*, to control the way &alpha; is computed, with the last model or with the ensmble built so far. Default value is *false*.
+- A new hyperparameter to the SPODE class, *parent*, to set the root node of the model. If no value is set the root parameter of the constructor is used.
+- A new hyperparameter to the TAN class, *parent*, to set the root node of the model. If not set the first feature is used as root.
+- A new model named XSPODE, an optimized for speed averaged one dependence estimator.
+- A new model named XSP2DE, an optimized for speed averaged two dependence estimator.
+- A new model named XBAODE, an optimized for speed BoostAODE model.
+- A new model named XBA2DE, an optimized for speed BoostA2DE model.
+
+### Internal
+
+- Optimize ComputeCPT method in the Node class.
+- Add methods getCount and getMaxCount to the CountingSemaphore class, returning the current count and the maximum count of threads respectively.
+
+### Changed
+
+- Hyperparameter *maxTolerance* in the BoostAODE class is now in [1, 6] range (it was in [1, 4] range before).
+
+## [1.0.6] 2024-11-23
+
+### Fixed
+
+- Prevent existing edges to be added to the network in the `add_edge` method.
+- Don't allow to add nodes or edges on already fiited networks.
+- Number of threads spawned
+- Network class tests
+
+### Added
+
+- Library logo generated with <https://openart.ai> to README.md
+- Link to the coverage report in the README.md coverage label.
+- *convergence_best* hyperparameter to the BoostAODE class, to control the way the prior accuracy is computed if convergence is set. Default value is *false*.
+- SPnDE model.
+- A2DE model.
+- BoostA2DE model.
+- A2DE & SPnDE tests.
+- Add tests to reach 99% of coverage.
+- Add tests to check the correct version of the mdlp, folding and json libraries.
+- Library documentation generated with Doxygen.
+- Link to documentation in the README.md.
+- Three types of smoothing the Bayesian Network ORIGINAL, LAPLACE and CESTNIK.
+
+### Internal
+
+- Fixed doxygen optional dependency
+- Add env parallel variable to Makefile
+- Add CountingSemaphore class to manage the number of threads spawned.
+- Ignore CUDA language in CMake CodeCoverage module.
+- Update mdlp library as a git submodule.
+- Create library ShuffleArffFile to limit the number of samples with a parameter and shuffle them.
+- Refactor catch2 library location to test/lib
+- Refactor loadDataset function in tests.
+- Remove conditionalEdgeWeights method in BayesMetrics.
+- Refactor Coverage Report generation.
+- Add devcontainer to work on apple silicon.
+- Change build cmake folder names to Debug & Release.
+- Add a Makefile target (doc) to generate the documentation.
+- Add a Makefile target (doc-install) to install the documentation.
+
+### Libraries versions
+
+- mdlp: 2.0.1
+- Folding: 1.1.0
+- json: 3.11
+- ArffFiles: 1.1.0
+
 ## [1.0.5] 2024-04-20
 
 ### Added
@@ -25,6 +104,11 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - The worse model count in BoostAODE is reset to 0 every time a new model produces better accuracy, so the tolerance of the model is meant to be the number of **consecutive** models that produce worse accuracy.
 - Default hyperparameter values in BoostAODE: bisection is true, maxTolerance is 3, convergence is true
 
+### Removed
+
+- The 'predict_single' hyperparameter from the BoostAODE class.
+- The 'repeatSparent' hyperparameter from the BoostAODE class.
+
 ## [1.0.4] 2024-03-06
 
 ### Added

CMakeLists.txt

@@ -1,7 +1,7 @@
 cmake_minimum_required(VERSION 3.20)
 
 project(BayesNet
-  VERSION 1.0.5
+  VERSION 1.1.0
   DESCRIPTION "Bayesian Network and basic classifiers Library."
   HOMEPAGE_URL "https://github.com/rmontanana/bayesnet"
   LANGUAGES CXX
@@ -25,8 +25,12 @@ set(CMAKE_CXX_EXTENSIONS                  OFF)
 set(CMAKE_EXPORT_COMPILE_COMMANDS          ON)
 set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${TORCH_CXX_FLAGS}")
 SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -pthread")
-set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -fprofile-arcs -ftest-coverage -O0 -g")
-set(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE} -O3")
+set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -fprofile-arcs -ftest-coverage -fno-elide-constructors")
+set(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE} -Ofast")
+if (NOT ${CMAKE_SYSTEM_NAME} MATCHES "Darwin")
+    set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -fno-default-inline")
+endif()
+
 # Options
 # -------
 option(ENABLE_CLANG_TIDY "Enable to add clang tidy."              OFF)
@@ -37,7 +41,6 @@ option(INSTALL_GTEST "Enable installation of googletest."         OFF)
 # CMakes modules
 # --------------
 set(CMAKE_MODULE_PATH ${CMAKE_CURRENT_SOURCE_DIR}/cmake/modules ${CMAKE_MODULE_PATH})
-include(AddGitSubmodule)
 
 if (CMAKE_BUILD_TYPE STREQUAL "Debug")
   MESSAGE("Debug mode")
@@ -45,11 +48,12 @@ if (CMAKE_BUILD_TYPE STREQUAL "Debug")
   set(CODE_COVERAGE ON)
 endif (CMAKE_BUILD_TYPE STREQUAL "Debug")
 
-
+get_property(LANGUAGES GLOBAL PROPERTY ENABLED_LANGUAGES)
+message(STATUS "Languages=${LANGUAGES}")
 if (CODE_COVERAGE)
   enable_testing()
   include(CodeCoverage)
-  MESSAGE("Code coverage enabled")
+  MESSAGE(STATUS "Code coverage enabled")
   SET(GCC_COVERAGE_LINK_FLAGS " ${GCC_COVERAGE_LINK_FLAGS} -lgcov --coverage")
 endif (CODE_COVERAGE)
 
@@ -59,21 +63,22 @@ endif (ENABLE_CLANG_TIDY)
 
 # External libraries - dependencies of BayesNet
 # ---------------------------------------------
-# include(FetchContent)
-add_git_submodule("lib/mdlp")
-add_git_submodule("lib/json")
+
+find_package(Torch CONFIG REQUIRED)
+find_package(fimdlp CONFIG REQUIRED)
+find_package(nlohmann_json CONFIG REQUIRED)
+find_package(folding CONFIG REQUIRED)
 
 # Subdirectories
 # --------------
 add_subdirectory(config)
-add_subdirectory(lib/Files)
 add_subdirectory(bayesnet)
 
 # Testing
 # -------
 if (ENABLE_TESTING)
-  MESSAGE("Testing enabled")
-  add_git_submodule("lib/catch2")  
+MESSAGE(STATUS "Testing enabled")
+  find_package(Catch2 CONFIG REQUIRED)
   include(CTest)
   add_subdirectory(tests)
 endif (ENABLE_TESTING)
@@ -86,3 +91,18 @@ install(TARGETS BayesNet
         CONFIGURATIONS Release)
 install(DIRECTORY bayesnet/ DESTINATION include/bayesnet FILES_MATCHING CONFIGURATIONS Release PATTERN "*.h")
 install(FILES ${CMAKE_BINARY_DIR}/configured_files/include/bayesnet/config.h DESTINATION include/bayesnet CONFIGURATIONS Release)
+
+# Documentation
+# -------------
+find_package(Doxygen)
+if (Doxygen_FOUND)
+  set(DOC_DIR ${CMAKE_CURRENT_SOURCE_DIR}/docs)
+  set(doxyfile_in ${DOC_DIR}/Doxyfile.in)
+  set(doxyfile ${DOC_DIR}/Doxyfile)
+  configure_file(${doxyfile_in} ${doxyfile} @ONLY)
+  doxygen_add_docs(doxygen
+      WORKING_DIRECTORY ${DOC_DIR}
+    CONFIG_FILE ${doxyfile})
+else (Doxygen_FOUND) 
+  MESSAGE("* Doxygen not found")
+endif (Doxygen_FOUND)

Makefile

@@ -1,16 +1,22 @@
 SHELL := /bin/bash
 .DEFAULT_GOAL := help
-.PHONY: viewcoverage coverage setup help install uninstall diagrams buildr buildd test clean debug release sample updatebadge
+.PHONY: viewcoverage coverage setup help install uninstall diagrams buildr buildd test clean debug release sample updatebadge doc doc-install init clean-test
 
-f_release = build_release
-f_debug = build_debug
+f_release = build_Release
+f_debug = build_Debug
 f_diagrams = diagrams
 app_targets = BayesNet
 test_targets = TestBayesNet
 clang-uml = clang-uml
 plantuml = plantuml
+lcov = lcov
+genhtml = genhtml
 dot = dot
-n_procs = -j 16
+docsrcdir = docs/manual
+mansrcdir = docs/man3
+mandestdir = /usr/local/share/man
+sed_command_link = 's/e">LCOV -/e"><a href="https:\/\/rmontanana.github.io\/bayesnet">Back to manual<\/a> LCOV -/g'
+sed_command_diagram = 's/Diagram"/Diagram" width="100%" height="100%" /g'
 
 define ClearTests
 	@for t in $(test_targets); do \
@@ -37,7 +43,7 @@ setup: ## Install dependencies for tests and coverage
 	fi
 	@echo "* You should install plantuml & graphviz for the diagrams"
 
-diagrams: ## Create an UML class diagram & depnendency of the project (diagrams/BayesNet.png)
+diagrams: ## Create an UML class diagram & dependency of the project (diagrams/BayesNet.png)
 	@which $(plantuml) || (echo ">>> Please install plantuml"; exit 1)
 	@which $(dot) || (echo ">>> Please install graphviz"; exit 1)
 	@which $(clang-uml) || (echo ">>> Please install clang-uml"; exit 1)
@@ -52,12 +58,12 @@ diagrams: ## Create an UML class diagram & depnendency of the project (diagrams/
 	@$(dot) -Tsvg $(f_debug)/dependency.dot.BayesNet -o $(f_diagrams)/dependency.svg
 
 buildd: ## Build the debug targets
-	cmake --build $(f_debug) -t $(app_targets) $(n_procs)
+	cmake --build $(f_debug) -t $(app_targets) --parallel $(CMAKE_BUILD_PARALLEL_LEVEL)
 
 buildr: ## Build the release targets
-	cmake --build $(f_release) -t $(app_targets) $(n_procs)
+	cmake --build $(f_release) -t $(app_targets) --parallel $(CMAKE_BUILD_PARALLEL_LEVEL)
 
-clean: ## Clean the tests info
+clean-test: ## Clean the tests info
 	@echo ">>> Cleaning Debug BayesNet tests...";
 	$(call ClearTests)
 	@echo ">>> Done";
@@ -73,33 +79,56 @@ install: ## Install library
 	@cmake --install $(f_release) --prefix $(prefix)
 	@echo ">>> Done";
 
+init: ## Initialize the project installing dependencies
+	@echo ">>> Installing dependencies"
+	@vcpkg install
+	@echo ">>> Done";
+
+clean: ## Clean the project
+	@echo ">>> Cleaning the project..."
+	@if test -d build_Debug ; then echo "- Deleting build_Debug folder" ; rm -rf build_Debug; fi
+	@if test -d build_Release ; then echo "- Deleting build_Release folder" ; rm -rf build_Release; fi
+	@if test -f CMakeCache.txt ; then echo "- Deleting CMakeCache.txt"; rm -f CMakeCache.txt; fi
+	@if test -d vcpkg_installed ; then echo "- Deleting vcpkg_installed folder" ; rm -rf vcpkg_installed; fi
+	@$(MAKE) clean-test
+	@echo ">>> Done";
+
 debug: ## Build a debug version of the project
 	@echo ">>> Building Debug BayesNet...";
 	@if [ -d ./$(f_debug) ]; then rm -rf ./$(f_debug); fi
 	@mkdir $(f_debug); 
-	@cmake -S . -B $(f_debug) -D CMAKE_BUILD_TYPE=Debug -D ENABLE_TESTING=ON -D CODE_COVERAGE=ON
+	@cmake -S . -B $(f_debug) -D CMAKE_BUILD_TYPE=Debug -D ENABLE_TESTING=ON -D CODE_COVERAGE=ON -DCMAKE_TOOLCHAIN_FILE=${VCPKG_ROOT}/scripts/buildsystems/vcpkg.cmake
 	@echo ">>> Done";
 
 release: ## Build a Release version of the project
 	@echo ">>> Building Release BayesNet...";
 	@if [ -d ./$(f_release) ]; then rm -rf ./$(f_release); fi
 	@mkdir $(f_release); 
-	@cmake -S . -B $(f_release) -D CMAKE_BUILD_TYPE=Release
+	@cmake -S . -B $(f_release) -D CMAKE_BUILD_TYPE=Release -DCMAKE_TOOLCHAIN_FILE=${VCPKG_ROOT}/scripts/buildsystems/vcpkg.cmake
 	@echo ">>> Done";
 
 fname = "tests/data/iris.arff"
 sample: ## Build sample
 	@echo ">>> Building Sample...";
 	@if [ -d ./sample/build ]; then rm -rf ./sample/build; fi
-	@cd sample && cmake -B build -S . && cmake --build build -t bayesnet_sample
+	@cd sample && cmake -B build -S . -D CMAKE_BUILD_TYPE=Release -DCMAKE_TOOLCHAIN_FILE=${VCPKG_ROOT}/scripts/buildsystems/vcpkg.cmake && \
+	cmake --build build -t bayesnet_sample
 	sample/build/bayesnet_sample $(fname)
 	@echo ">>> Done";
 
+fname = "tests/data/iris.arff"
+sample2: ## Build sample2
+	@echo ">>> Building Sample...";
+	@if [ -d ./sample/build ]; then rm -rf ./sample/build; fi
+	@cd sample && cmake -B build -S . -D CMAKE_BUILD_TYPE=Debug && cmake --build build -t bayesnet_sample_xspode
+	sample/build/bayesnet_sample_xspode $(fname)
+	@echo ">>> Done";		
+
 opt = ""
 test: ## Run tests (opt="-s") to verbose output the tests, (opt="-c='Test Maximum Spanning Tree'") to run only that section
-	@echo ">>> Running BayesNet & Platform tests...";
-	@$(MAKE) clean
-	@cmake --build $(f_debug) -t $(test_targets) $(n_procs)
+	@echo ">>> Running BayesNet tests...";
+	@$(MAKE) clean-test
+	@cmake --build $(f_debug) -t $(test_targets) --parallel $(CMAKE_BUILD_PARALLEL_LEVEL)
 	@for t in $(test_targets); do \
 		echo ">>> Running $$t...";\
 		if [ -f $(f_debug)/tests/$$t ]; then \
@@ -112,31 +141,71 @@ test: ## Run tests (opt="-s") to verbose output the tests, (opt="-c='Test Maximu
 
 coverage: ## Run tests and generate coverage report (build/index.html)
 	@echo ">>> Building tests with coverage..."
-	@$(MAKE) test
-	@gcovr $(f_debug)/tests
-	@echo ">>> Done";	
-
-viewcoverage: ## Run tests, generate coverage report and upload it to codecov (build/index.html)
-	@echo ">>> Building tests with coverage..."
-	@$(MAKE) coverage
+	@which $(lcov) || (echo ">>ease install lcov"; exit 1)
+	@if [ ! -f $(f_debug)/tests/coverage.info ] ; then $(MAKE) test ; fi
 	@echo ">>> Building report..."
 	@cd $(f_debug)/tests; \
-	lcov --directory . --capture --output-file coverage.info >/dev/null 2>&1; \
-	lcov --remove coverage.info '/usr/*' --output-file coverage.info >/dev/null 2>&1; \
-	lcov --remove coverage.info 'lib/*' --output-file coverage.info >/dev/null 2>&1; \
-	lcov --remove coverage.info 'libtorch/*' --output-file coverage.info >/dev/null 2>&1; \
-	lcov --remove coverage.info 'tests/*' --output-file coverage.info >/dev/null 2>&1; \
-	lcov --remove coverage.info 'bayesnet/utils/loguru.*' --output-file coverage.info >/dev/null 2>&1; \
-	genhtml coverage.info --output-directory coverage >/dev/null 2>&1;
+	$(lcov) --directory CMakeFiles --capture --demangle-cpp --ignore-errors source,source --output-file coverage.info >/dev/null 2>&1; \
+	$(lcov) --remove coverage.info '/usr/*' --output-file coverage.info >/dev/null 2>&1; \
+	$(lcov) --remove coverage.info 'lib/*' --output-file coverage.info >/dev/null 2>&1; \
+	$(lcov) --remove coverage.info 'include/*' --output-file coverage.info >/dev/null 2>&1; \
+	$(lcov) --remove coverage.info 'libtorch/*' --output-file coverage.info >/dev/null 2>&1; \
+	$(lcov) --remove coverage.info 'tests/*' --output-file coverage.info >/dev/null 2>&1; \
+	$(lcov) --remove coverage.info 'bayesnet/utils/loguru.*' --ignore-errors unused --output-file coverage.info >/dev/null 2>&1; \
+	$(lcov) --remove coverage.info '/opt/miniconda/*' --ignore-errors unused --output-file coverage.info >/dev/null 2>&1; \
+	$(lcov) --summary coverage.info
 	@$(MAKE) updatebadge
-	@xdg-open $(f_debug)/tests/coverage/index.html || open $(f_debug)/tests/coverage/index.html 2>/dev/null
+	@echo ">>> Done";	
+
+viewcoverage: ## View the html coverage report
+	@which $(genhtml) >/dev/null || (echo ">>> Please install lcov (genhtml not found)"; exit 1)
+	@if [ ! -d $(docsrcdir)/coverage ]; then mkdir -p $(docsrcdir)/coverage; fi
+	@if [ ! -f $(f_debug)/tests/coverage.info ]; then \
+		echo ">>> No coverage.info file found. Run make coverage first!"; \
+		exit 1; \
+	fi
+	@$(genhtml) $(f_debug)/tests/coverage.info --demangle-cpp --output-directory $(docsrcdir)/coverage --title "BayesNet Coverage Report" -s -k -f --legend >/dev/null 2>&1;
+	@xdg-open $(docsrcdir)/coverage/index.html || open $(docsrcdir)/coverage/index.html 2>/dev/null
 	@echo ">>> Done";
 
 updatebadge: ## Update the coverage badge in README.md
+	@which python || (echo ">>> Please install python"; exit 1)
+	@if [ ! -f $(f_debug)/tests/coverage.info ]; then \
+		echo ">>> No coverage.info file found. Run make coverage first!"; \
+		exit 1; \
+	fi
 	@echo ">>> Updating coverage badge..."
 	@env python update_coverage.py $(f_debug)/tests
 	@echo ">>> Done";
 
+doc: ## Generate documentation
+	@echo ">>> Generating documentation..."
+	@cmake --build $(f_release) -t doxygen
+	@cp -rp diagrams $(docsrcdir)
+	@
+	@if [ "$(shell uname)" = "Darwin" ]; then \
+		sed -i "" $(sed_command_link) $(docsrcdir)/coverage/index.html ; \
+		sed -i "" $(sed_command_diagram) $(docsrcdir)/index.html ; \
+	else \
+		sed -i $(sed_command_link) $(docsrcdir)/coverage/index.html ; \
+		sed -i $(sed_command_diagram) $(docsrcdir)/index.html ; \
+	fi
+	@echo ">>> Done";
+
+docdir = ""
+doc-install: ## Install documentation
+	@echo ">>> Installing documentation..."
+	@if [ "$(docdir)" = "" ]; then \
+		echo "docdir parameter has to be set when calling doc-install, i.e. docdir=../bayesnet_help"; \
+		exit 1; \
+	fi
+	@if [ ! -d $(docdir) ]; then \
+		@$(MAKE) doc; \
+	fi
+	@cp -rp $(docsrcdir)/* $(docdir)
+	@sudo cp -rp $(mansrcdir) $(mandestdir)
+	@echo ">>> Done";
+
 help: ## Show help message
 	@IFS=$$'\n' ; \
 	help_lines=(`fgrep -h "##" $(MAKEFILE_LIST) | fgrep -v fgrep | sed -e 's/\\$$//' | sed -e 's/##/:/'`); \

README.md

@@ -1,39 +1,114 @@
-# BayesNet
+# <img src="logo.png" alt="logo" width="50"/>  BayesNet
 
 ![C++](https://img.shields.io/badge/c++-%2300599C.svg?style=flat&logo=c%2B%2B&logoColor=white)
 [![License: MIT](https://img.shields.io/badge/License-MIT-blue.svg)](<https://opensource.org/licenses/MIT>)
-![Gitea Release](https://img.shields.io/gitea/v/release/rmontanana/bayesnet?gitea_url=https://gitea.rmontanana.es:3000)
+![Gitea Release](https://img.shields.io/gitea/v/release/rmontanana/bayesnet?gitea_url=https://gitea.rmontanana.es)
 [![Codacy Badge](https://app.codacy.com/project/badge/Grade/cf3e0ac71d764650b1bf4d8d00d303b1)](https://app.codacy.com/gh/Doctorado-ML/BayesNet/dashboard?utm_source=gh&utm_medium=referral&utm_content=&utm_campaign=Badge_grade)
-![Gitea Last Commit](https://img.shields.io/gitea/last-commit/rmontanana/bayesnet?gitea_url=https://gitea.rmontanana.es:3000&logo=gitea)
-![Static Badge](https://img.shields.io/badge/Coverage-97,2%25-green)
+[![Security Rating](https://sonarcloud.io/api/project_badges/measure?project=rmontanana_BayesNet&metric=security_rating)](https://sonarcloud.io/summary/new_code?id=rmontanana_BayesNet)
+[![Reliability Rating](https://sonarcloud.io/api/project_badges/measure?project=rmontanana_BayesNet&metric=reliability_rating)](https://sonarcloud.io/summary/new_code?id=rmontanana_BayesNet)
+![Gitea Last Commit](https://img.shields.io/gitea/last-commit/rmontanana/bayesnet?gitea_url=https://gitea.rmontanana.es&logo=gitea)
+[![Coverage Badge](https://img.shields.io/badge/Coverage-99,1%25-green)](https://gitea.rmontanana.es/rmontanana/BayesNet)
+[![DOI](https://zenodo.org/badge/667782806.svg)](https://doi.org/10.5281/zenodo.14210344)
 
-Bayesian Network Classifiers using libtorch from scratch
-
-## Dependencies
-
-The only external dependency is [libtorch](https://pytorch.org/cppdocs/installing.html) which can be installed with the following commands:
-
-```bash
-wget https://download.pytorch.org/libtorch/nightly/cpu/libtorch-shared-with-deps-latest.zip
-unzip libtorch-shared-with-deps-latest.zips
-```
+Bayesian Network Classifiers library
 
 ## Setup
 
+### Using the vcpkg library
+
+You can use the library with the vcpkg library manager. In your project you have to add the following files:
+
+#### vcpkg.json
+
+```json
+{
+  "name": "sample-project",
+  "version-string": "0.1.0",
+  "dependencies": [
+    "bayesnet"
+  ]
+}
+```
+
+#### vcpkg-configuration.json
+
+```json
+{
+  "registries": [
+    {
+      "kind": "git",
+      "repository": "https://github.com/rmontanana/vcpkg-stash",
+      "baseline": "393efa4e74e053b6f02c4ab03738c8fe796b28e5",
+      "packages": [
+        "folding",
+        "bayesnet",
+        "arff-files",
+        "fimdlp",
+        "libtorch-bin"
+      ]
+    }
+  ],
+  "default-registry": {
+    "kind": "git",
+    "repository": "https://github.com/microsoft/vcpkg",
+    "baseline": "760bfd0c8d7c89ec640aec4df89418b7c2745605"
+  }
+}
+```
+
+#### CMakeLists.txt
+
+You have to include the following lines in your `CMakeLists.txt` file:
+
+```cmake
+find_package(bayesnet CONFIG REQUIRED)
+
+add_executable(myapp main.cpp)
+
+target_link_libraries(myapp PRIVATE bayesnet::bayesnet)
+```
+
+After that, you can use the `vcpkg` command to install the dependencies:
+
+```bash
+vcpkg install
+```
+
+**Note: In the `sample` folder you can find a sample application that uses the library. You can use it as a reference to create your own application.**
+
+## Playing with the library
+
+The dependencies are managed with [vcpkg](https://vcpkg.io/) and supported by a private vcpkg repository in [https://github.com/rmontanana/vcpkg-stash](https://github.com/rmontanana/vcpkg-stash).
+
+### Getting the code
+
+```bash
+git clone https://github.com/doctorado-ml/bayesnet
+```
+
+Once you have the code, you can use the `make` command to build the project. The `Makefile` is used to manage the build process and it will automatically download and install the dependencies.
+
 ### Release
 
 ```bash
-make release
-make buildr
-sudo make install
+make init # Install dependencies
+make release # Build the release version
+make buildr # compile and link the release version
 ```
 
 ### Debug & Tests
 
 ```bash
-make debug
-make test
-make coverage
+make init # Install dependencies
+make debug # Build the debug version
+make test # Run the tests
+```
+
+### Coverage
+
+```bash
+make coverage # Run the tests with coverage
+make viewcoverage # View the coverage report in the browser
 ```
 
 ### Sample app
@@ -47,7 +122,41 @@ make sample fname=tests/data/glass.arff
 
 ## Models
 
-### [BoostAODE](docs/BoostAODE.md)
+#### - TAN
+
+#### - KDB
+
+#### - SPODE
+
+#### - SPnDE
+
+#### - AODE
+
+#### - A2DE
+
+#### - [BoostAODE](docs/BoostAODE.md)
+
+#### - XBAODE
+
+#### - BoostA2DE
+
+#### - XBA2DE
+
+### With Local Discretization
+
+#### - TANLd
+
+#### - KDBLd
+
+#### - SPODELd
+
+#### - AODELd
+
+## Documentation
+
+### [Manual](https://rmontanana.github.io/bayesnet/)
+
+### [Coverage report](https://rmontanana.github.io/bayesnet/coverage/index.html)
 
 ## Diagrams
 

bayesnet/BaseClassifier.h

@@ -8,17 +8,19 @@
 #include <vector>
 #include <torch/torch.h>
 #include <nlohmann/json.hpp>
+#include "bayesnet/network/Network.h"
+
 namespace bayesnet {
     enum status_t { NORMAL, WARNING, ERROR };
     class BaseClassifier {
     public:
-        // X is nxm std::vector, y is nx1 std::vector
-        virtual BaseClassifier& fit(std::vector<std::vector<int>>& X, std::vector<int>& y, const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states) = 0;
-        // X is nxm tensor, y is nx1 tensor
-        virtual BaseClassifier& fit(torch::Tensor& X, torch::Tensor& y, const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states) = 0;
-        virtual BaseClassifier& fit(torch::Tensor& dataset, const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states) = 0;
-        virtual BaseClassifier& fit(torch::Tensor& dataset, const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states, const torch::Tensor& weights) = 0;
         virtual ~BaseClassifier() = default;
+        // X is nxm std::vector, y is nx1 std::vector
+        virtual BaseClassifier& fit(std::vector<std::vector<int>>& X, std::vector<int>& y, const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states, const Smoothing_t smoothing) = 0;
+        // X is nxm tensor, y is nx1 tensor
+        virtual BaseClassifier& fit(torch::Tensor& X, torch::Tensor& y, const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states, const Smoothing_t smoothing) = 0;
+        virtual BaseClassifier& fit(torch::Tensor& dataset, const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states, const Smoothing_t smoothing) = 0;
+        virtual BaseClassifier& fit(torch::Tensor& dataset, const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states, const torch::Tensor& weights, const Smoothing_t smoothing) = 0;
         torch::Tensor virtual predict(torch::Tensor& X) = 0;
         std::vector<int> virtual predict(std::vector<std::vector<int >>& X) = 0;
         torch::Tensor virtual predict_proba(torch::Tensor& X) = 0;
@@ -26,8 +28,8 @@ namespace bayesnet {
         status_t virtual getStatus() const = 0;
         float virtual score(std::vector<std::vector<int>>& X, std::vector<int>& y) = 0;
         float virtual score(torch::Tensor& X, torch::Tensor& y) = 0;
-        int virtual getNumberOfNodes()const = 0;
-        int virtual getNumberOfEdges()const = 0;
+        int virtual getNumberOfNodes() const = 0;
+        int virtual getNumberOfEdges() const = 0;
         int virtual getNumberOfStates() const = 0;
         int virtual getClassNumStates() const = 0;
         std::vector<std::string> virtual show() const = 0;
@@ -35,11 +37,13 @@ namespace bayesnet {
         virtual std::string getVersion() = 0;
         std::vector<std::string> virtual topological_order() = 0;
         std::vector<std::string> virtual getNotes() const = 0;
-        std::string virtual dump_cpt()const = 0;
+        std::string virtual dump_cpt() const = 0;
         virtual void setHyperparameters(const nlohmann::json& hyperparameters) = 0;
         std::vector<std::string>& getValidHyperparameters() { return validHyperparameters; }
     protected:
-        virtual void trainModel(const torch::Tensor& weights) = 0;
+        virtual void trainModel(const torch::Tensor& weights, const Smoothing_t smoothing) = 0;
         std::vector<std::string> validHyperparameters;
+        std::vector<std::string> notes; // Used to store messages occurred during the fit process
+        status_t status = NORMAL;
     };
 }

bayesnet/CMakeLists.txt

@@ -1,6 +1,6 @@
 include_directories(
-    ${BayesNet_SOURCE_DIR}/lib/mdlp
-    ${BayesNet_SOURCE_DIR}/lib/Files
+    ${BayesNet_SOURCE_DIR}/lib/log
+    ${BayesNet_SOURCE_DIR}/lib/mdlp/src
     ${BayesNet_SOURCE_DIR}/lib/folding
     ${BayesNet_SOURCE_DIR}/lib/json/include
     ${BayesNet_SOURCE_DIR}
@@ -10,4 +10,4 @@ include_directories(
 file(GLOB_RECURSE Sources "*.cc")
 
 add_library(BayesNet ${Sources})
-target_link_libraries(BayesNet mdlp "${TORCH_LIBRARIES}")
+target_link_libraries(BayesNet fimdlp "${TORCH_LIBRARIES}")

bayesnet/classifiers/Classifier.cc

@@ -10,8 +10,7 @@
 
 namespace bayesnet {
     Classifier::Classifier(Network model) : model(model), m(0), n(0), metrics(Metrics()), fitted(false) {}
-    const std::string CLASSIFIER_NOT_FITTED = "Classifier has not been fitted";
-    Classifier& Classifier::build(const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states, const torch::Tensor& weights)
+    Classifier& Classifier::build(const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states, const torch::Tensor& weights, const Smoothing_t smoothing)
     {
         this->features = features;
         this->className = className;
@@ -23,7 +22,7 @@ namespace bayesnet {
         metrics = Metrics(dataset, features, className, n_classes);
         model.initialize();
         buildModel(weights);
-        trainModel(weights);
+        trainModel(weights, smoothing);
         fitted = true;
         return *this;
     }
@@ -41,20 +40,20 @@ namespace bayesnet {
             throw std::runtime_error(oss.str());
         }
     }
-    void Classifier::trainModel(const torch::Tensor& weights)
+    void Classifier::trainModel(const torch::Tensor& weights, Smoothing_t smoothing)
     {
-        model.fit(dataset, weights, features, className, states);
+        model.fit(dataset, weights, features, className, states, smoothing);
     }
     // X is nxm where n is the number of features and m the number of samples
-    Classifier& Classifier::fit(torch::Tensor& X, torch::Tensor& y, const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states)
+    Classifier& Classifier::fit(torch::Tensor& X, torch::Tensor& y, const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states, const Smoothing_t smoothing)
     {
         dataset = X;
         buildDataset(y);
         const torch::Tensor weights = torch::full({ dataset.size(1) }, 1.0 / dataset.size(1), torch::kDouble);
-        return build(features, className, states, weights);
+        return build(features, className, states, weights, smoothing);
     }
     // X is nxm where n is the number of features and m the number of samples
-    Classifier& Classifier::fit(std::vector<std::vector<int>>& X, std::vector<int>& y, const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states)
+    Classifier& Classifier::fit(std::vector<std::vector<int>>& X, std::vector<int>& y, const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states, const Smoothing_t smoothing)
     {
         dataset = torch::zeros({ static_cast<int>(X.size()), static_cast<int>(X[0].size()) }, torch::kInt32);
         for (int i = 0; i < X.size(); ++i) {
@@ -63,18 +62,18 @@ namespace bayesnet {
         auto ytmp = torch::tensor(y, torch::kInt32);
         buildDataset(ytmp);
         const torch::Tensor weights = torch::full({ dataset.size(1) }, 1.0 / dataset.size(1), torch::kDouble);
-        return build(features, className, states, weights);
+        return build(features, className, states, weights, smoothing);
     }
-    Classifier& Classifier::fit(torch::Tensor& dataset, const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states)
+    Classifier& Classifier::fit(torch::Tensor& dataset, const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states, const Smoothing_t smoothing)
     {
         this->dataset = dataset;
         const torch::Tensor weights = torch::full({ dataset.size(1) }, 1.0 / dataset.size(1), torch::kDouble);
-        return build(features, className, states, weights);
+        return build(features, className, states, weights, smoothing);
     }
-    Classifier& Classifier::fit(torch::Tensor& dataset, const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states, const torch::Tensor& weights)
+    Classifier& Classifier::fit(torch::Tensor& dataset, const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states, const torch::Tensor& weights, const Smoothing_t smoothing)
     {
         this->dataset = dataset;
-        return build(features, className, states, weights);
+        return build(features, className, states, weights, smoothing);
     }
     void Classifier::checkFitParameters()
     {

bayesnet/classifiers/Classifier.h

@@ -8,7 +8,6 @@
 #define CLASSIFIER_H
 #include <torch/torch.h>
 #include "bayesnet/utils/BayesMetrics.h"
-#include "bayesnet/network/Network.h"
 #include "bayesnet/BaseClassifier.h"
 
 namespace bayesnet {
@@ -16,10 +15,10 @@ namespace bayesnet {
     public:
         Classifier(Network model);
         virtual ~Classifier() = default;
-        Classifier& fit(std::vector<std::vector<int>>& X, std::vector<int>& y, const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states) override;
-        Classifier& fit(torch::Tensor& X, torch::Tensor& y, const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states) override;
-        Classifier& fit(torch::Tensor& dataset, const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states) override;
-        Classifier& fit(torch::Tensor& dataset, const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states, const torch::Tensor& weights) override;
+        Classifier& fit(std::vector<std::vector<int>>& X, std::vector<int>& y, const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states, const Smoothing_t smoothing) override;
+        Classifier& fit(torch::Tensor& X, torch::Tensor& y, const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states, const Smoothing_t smoothing) override;
+        Classifier& fit(torch::Tensor& dataset, const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states, const Smoothing_t smoothing) override;
+        Classifier& fit(torch::Tensor& dataset, const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states, const torch::Tensor& weights, const Smoothing_t smoothing) override;
         void addNodes();
         int getNumberOfNodes() const override;
         int getNumberOfEdges() const override;
@@ -47,14 +46,13 @@ namespace bayesnet {
         std::string className;
         std::map<std::string, std::vector<int>> states;
         torch::Tensor dataset; // (n+1)xm tensor
-        status_t status = NORMAL;
-        std::vector<std::string> notes; // Used to store messages occurred during the fit process
         void checkFitParameters();
         virtual void buildModel(const torch::Tensor& weights) = 0;
-        void trainModel(const torch::Tensor& weights) override;
+        void trainModel(const torch::Tensor& weights, const Smoothing_t smoothing) override;
         void buildDataset(torch::Tensor& y);
+        const std::string CLASSIFIER_NOT_FITTED = "Classifier has not been fitted";
     private:
-        Classifier& build(const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states, const torch::Tensor& weights);
+        Classifier& build(const std::vector<std::string>& features, const std::string& className, std::map<std::string, std::vector<int>>& states, const torch::Tensor& weights, const Smoothing_t smoothing);
     };
 }
 #endif

bayesnet/classifiers/KDB.cc

@@ -3,7 +3,7 @@
 // SPDX-FileType: SOURCE
 // SPDX-License-Identifier: MIT
 // ***************************************************************
-
+#include "bayesnet/utils/bayesnetUtils.h"
 #include "KDB.h"
 
 namespace bayesnet {

bayesnet/classifiers/KDB.h

@@ -7,15 +7,14 @@
 #ifndef KDB_H
 #define KDB_H
 #include <torch/torch.h>
-#include "bayesnet/utils/bayesnetUtils.h"
 #include "Classifier.h"
 namespace bayesnet {
     class KDB : public Classifier {
     private:
         int k;
         float theta;
-        void add_m_edges(int idx, std::vector<int>& S, torch::Tensor& weights);
     protected:
+        void add_m_edges(int idx, std::vector<int>& S, torch::Tensor& weights);
         void buildModel(const torch::Tensor& weights) override;
     public:
         explicit KDB(int k, float theta = 0.03);

bayesnet/classifiers/KDBLd.cc

@@ -8,7 +8,7 @@
 
 namespace bayesnet {
     KDBLd::KDBLd(int k) : KDB(k), Proposal(dataset, features, className) {}
-    KDBLd& KDBLd::fit(torch::Tensor& X_, torch::Tensor& y_, const std::vector<std::string>& features_, const std::string& className_, map<std::string, std::vector<int>>& states_)
+    KDBLd& KDBLd::fit(torch::Tensor& X_, torch::Tensor& y_, const std::vector<std::string>& features_, const std::string& className_, map<std::string, std::vector<int>>& states_, const Smoothing_t smoothing)
     {
         checkInput(X_, y_);
         features = features_;
@@ -19,7 +19,7 @@ namespace bayesnet {
         states = fit_local_discretization(y);
         // We have discretized the input data
         // 1st we need to fit the model to build the normal KDB structure, KDB::fit initializes the base Bayesian network
-        KDB::fit(dataset, features, className, states);
+        KDB::fit(dataset, features, className, states, smoothing);
         states = localDiscretizationProposal(states, model);
         return *this;
     }

bayesnet/classifiers/KDBLd.h

@@ -15,7 +15,7 @@ namespace bayesnet {
     public:
         explicit KDBLd(int k);
         virtual ~KDBLd() = default;
-        KDBLd& fit(torch::Tensor& X, torch::Tensor& y, const std::vector<std::string>& features, const std::string& className, map<std::string, std::vector<int>>& states) override;
+        KDBLd& fit(torch::Tensor& X, torch::Tensor& y, const std::vector<std::string>& features, const std::string& className, map<std::string, std::vector<int>>& states, const Smoothing_t smoothing) override;
         std::vector<std::string> graph(const std::string& name = "KDB") const override;
         torch::Tensor predict(torch::Tensor& X) override;
         static inline std::string version() { return "0.0.1"; };

bayesnet/classifiers/Proposal.cc

@@ -4,7 +4,6 @@
 // SPDX-License-Identifier: MIT
 // ***************************************************************
 
-#include <ArffFiles.h>
 #include "Proposal.h"
 
 namespace bayesnet {
@@ -54,8 +53,7 @@ namespace bayesnet {
                     yJoinParents[i] += to_string(pDataset.index({ idx, i }).item<int>());
                 }
             }
-            auto arff = ArffFiles();
-            auto yxv = arff.factorize(yJoinParents);
+            auto yxv = factorize(yJoinParents);
             auto xvf_ptr = Xf.index({ index }).data_ptr<float>();
             auto xvf = std::vector<mdlp::precision_t>(xvf_ptr, xvf_ptr + Xf.size(1));
             discretizers[feature]->fit(xvf, yxv);
@@ -72,7 +70,7 @@ namespace bayesnet {
                 states[pFeatures[index]] = xStates;
             }
             const torch::Tensor weights = torch::full({ pDataset.size(1) }, 1.0 / pDataset.size(1), torch::kDouble);
-            model.fit(pDataset, weights, pFeatures, pClassName, states);
+            model.fit(pDataset, weights, pFeatures, pClassName, states, Smoothing_t::ORIGINAL);
         }
         return states;
     }
@@ -113,4 +111,19 @@ namespace bayesnet {
         }
         return Xtd;
     }
+    std::vector<int> Proposal::factorize(const std::vector<std::string>& labels_t)
+    {
+        std::vector<int> yy;
+        yy.reserve(labels_t.size());
+        std::map<std::string, int> labelMap;
+        int i = 0;
+        for (const std::string& label : labels_t) {
+            if (labelMap.find(label) == labelMap.end()) {
+                labelMap[label] = i++;
+                bool allDigits = std::all_of(label.begin(), label.end(), ::isdigit);
+            }
+            yy.push_back(labelMap[label]);
+        }
+        return yy;
+    }
 }

bayesnet/classifiers/Proposal.h

@@ -9,7 +9,7 @@
 #include <string>
 #include <map>
 #include <torch/torch.h>
-#include <CPPFImdlp.h>
+#include <fimdlp/CPPFImdlp.h>
 #include "bayesnet/network/Network.h"
 #include "Classifier.h"
 
@@ -27,6 +27,7 @@ namespace bayesnet {
         torch::Tensor y; // y discrete nx1 tensor
         map<std::string, mdlp::CPPFImdlp*> discretizers;
     private:
+        std::vector<int> factorize(const std::vector<std::string>& labels_t);
         torch::Tensor& pDataset; // (n+1)xm tensor
         std::vector<std::string>& pFeatures;
         std::string& pClassName;

bayesnet/classifiers/SPODE.cc

@@ -8,14 +8,29 @@
 
 namespace bayesnet {
 
-    SPODE::SPODE(int root) : Classifier(Network()), root(root) {}
+    SPODE::SPODE(int root) : Classifier(Network()), root(root)
+    {
+        validHyperparameters = { "parent" };
+    }
 
+    void SPODE::setHyperparameters(const nlohmann::json& hyperparameters_)
+    {
+        auto hyperparameters = hyperparameters_;
+        if (hyperparameters.contains("parent")) {
+            root = hyperparameters["parent"];
+            hyperparameters.erase("parent");
+        }
+        Classifier::setHyperparameters(hyperparameters);
+    }
     void SPODE::buildModel(const torch::Tensor& weights)
     {
         // 0. Add all nodes to the model
         addNodes();
         // 1. Add edges from the class node to all other nodes
         // 2. Add edges from the root node to all other nodes
+        if (root >= static_cast<int>(features.size())) {
+            throw std::invalid_argument("The parent node is not in the dataset");
+        }
         for (int i = 0; i < static_cast<int>(features.size()); ++i) {
             model.addEdge(className, features[i]);
             if (i != root) {

bayesnet/classifiers/SPODE.h

@@ -10,14 +10,15 @@
 
 namespace bayesnet {
     class SPODE : public Classifier {
-    private:
-        int root;
-    protected:
-        void buildModel(const torch::Tensor& weights) override;
     public:
         explicit SPODE(int root);
         virtual ~SPODE() = default;
+        void setHyperparameters(const nlohmann::json& hyperparameters_) override;
         std::vector<std::string> graph(const std::string& name = "SPODE") const override;
+    protected:
+        void buildModel(const torch::Tensor& weights) override;
+    private:
+        int root;
     };
 }
 #endif

bayesnet/classifiers/SPODELd.cc

@@ -8,25 +8,25 @@
 
 namespace bayesnet {
     SPODELd::SPODELd(int root) : SPODE(root), Proposal(dataset, features, className) {}
-    SPODELd& SPODELd::fit(torch::Tensor& X_, torch::Tensor& y_, const std::vector<std::string>& features_, const std::string& className_, map<std::string, std::vector<int>>& states_)
+    SPODELd& SPODELd::fit(torch::Tensor& X_, torch::Tensor& y_, const std::vector<std::string>& features_, const std::string& className_, map<std::string, std::vector<int>>& states_, const Smoothing_t smoothing)
     {
         checkInput(X_, y_);
         Xf = X_;
         y = y_;
-        return commonFit(features_, className_, states_);
+        return commonFit(features_, className_, states_, smoothing);
     }
 
-    SPODELd& SPODELd::fit(torch::Tensor& dataset, const std::vector<std::string>& features_, const std::string& className_, map<std::string, std::vector<int>>& states_)
+    SPODELd& SPODELd::fit(torch::Tensor& dataset, const std::vector<std::string>& features_, const std::string& className_, map<std::string, std::vector<int>>& states_, const Smoothing_t smoothing)
     {
         if (!torch::is_floating_point(dataset)) {
             throw std::runtime_error("Dataset must be a floating point tensor");
         }
         Xf = dataset.index({ torch::indexing::Slice(0, dataset.size(0) - 1), "..." }).clone();
         y = dataset.index({ -1, "..." }).clone().to(torch::kInt32);
-        return commonFit(features_, className_, states_);
+        return commonFit(features_, className_, states_, smoothing);
     }
 
-    SPODELd& SPODELd::commonFit(const std::vector<std::string>& features_, const std::string& className_, map<std::string, std::vector<int>>& states_)
+    SPODELd& SPODELd::commonFit(const std::vector<std::string>& features_, const std::string& className_, map<std::string, std::vector<int>>& states_, const Smoothing_t smoothing)
     {
         features = features_;
         className = className_;
@@ -34,7 +34,7 @@ namespace bayesnet {
         states = fit_local_discretization(y);
         // We have discretized the input data
         // 1st we need to fit the model to build the normal SPODE structure, SPODE::fit initializes the base Bayesian network
-        SPODE::fit(dataset, features, className, states);
+        SPODE::fit(dataset, features, className, states, smoothing);
         states = localDiscretizationProposal(states, model);
         return *this;
     }

bayesnet/classifiers/SPODELd.h

@@ -14,10 +14,10 @@ namespace bayesnet {
     public:
         explicit SPODELd(int root);
         virtual ~SPODELd() = default;
-        SPODELd& fit(torch::Tensor& X, torch::Tensor& y, const std::vector<std::string>& features, const std::string& className, map<std::string, std::vector<int>>& states) override;
-        SPODELd& fit(torch::Tensor& dataset, const std::vector<std::string>& features, const std::string& className, map<std::string, std::vector<int>>& states) override;
-        SPODELd& commonFit(const std::vector<std::string>& features, const std::string& className, map<std::string, std::vector<int>>& states);
-        std::vector<std::string> graph(const std::string& name = "SPODE") const override;
+        SPODELd& fit(torch::Tensor& X, torch::Tensor& y, const std::vector<std::string>& features, const std::string& className, map<std::string, std::vector<int>>& states, const Smoothing_t smoothing) override;
+        SPODELd& fit(torch::Tensor& dataset, const std::vector<std::string>& features, const std::string& className, map<std::string, std::vector<int>>& states, const Smoothing_t smoothing) override;
+        SPODELd& commonFit(const std::vector<std::string>& features, const std::string& className, map<std::string, std::vector<int>>& states, const Smoothing_t smoothing);
+        std::vector<std::string> graph(const std::string& name = "SPODELd") const override;
         torch::Tensor predict(torch::Tensor& X) override;
         static inline std::string version() { return "0.0.1"; };
     };

bayesnet/classifiers/SPnDE.cc

@@ -0,0 +1,38 @@
+// ***************************************************************
+// SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez
+// SPDX-FileType: SOURCE
+// SPDX-License-Identifier: MIT
+// ***************************************************************
+
+#include "SPnDE.h"
+
+namespace bayesnet {
+
+    SPnDE::SPnDE(std::vector<int> parents) : Classifier(Network()), parents(parents) {}
+
+    void SPnDE::buildModel(const torch::Tensor& weights)
+    {
+        // 0. Add all nodes to the model
+        addNodes();
+        std::vector<int> attributes;
+        for (int i = 0; i < static_cast<int>(features.size()); ++i) {
+            if (std::find(parents.begin(), parents.end(), i) == parents.end()) {
+                attributes.push_back(i);
+            }
+        }
+        // 1. Add edges from the class node to all other nodes
+        // 2. Add edges from the parents nodes to all other nodes
+        for (const auto& attribute : attributes) {
+            model.addEdge(className, features[attribute]);
+            for (const auto& root : parents) {
+
+                model.addEdge(features[root], features[attribute]);
+            }
+        }
+    }
+    std::vector<std::string> SPnDE::graph(const std::string& name) const
+    {
+        return model.graph(name);
+    }
+
+}

bayesnet/classifiers/SPnDE.h

@@ -0,0 +1,26 @@
+// ***************************************************************
+// SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez
+// SPDX-FileType: SOURCE
+// SPDX-License-Identifier: MIT
+// ***************************************************************
+
+#ifndef SPnDE_H
+#define SPnDE_H
+#include <vector>
+#include "Classifier.h"
+
+namespace bayesnet {
+    class SPnDE : public Classifier {
+    public:
+        explicit SPnDE(std::vector<int> parents);
+        virtual ~SPnDE() = default;
+        std::vector<std::string> graph(const std::string& name = "SPnDE") const override;
+    protected:
+        void buildModel(const torch::Tensor& weights) override;
+    private:
+        std::vector<int> parents;
+
+
+    };
+}
+#endif

bayesnet/classifiers/TAN.cc

@@ -7,8 +7,20 @@
 #include "TAN.h"
 
 namespace bayesnet {
-    TAN::TAN() : Classifier(Network()) {}
+    TAN::TAN() : Classifier(Network())
+    {
+        validHyperparameters = { "parent" };
+    }
 
+    void TAN::setHyperparameters(const nlohmann::json& hyperparameters_)
+    {
+        auto hyperparameters = hyperparameters_;
+        if (hyperparameters.contains("parent")) {
+            parent = hyperparameters["parent"];
+            hyperparameters.erase("parent");
+        }
+        Classifier::setHyperparameters(hyperparameters);
+    }
     void TAN::buildModel(const torch::Tensor& weights)
     {
         // 0. Add all nodes to the model
@@ -23,7 +35,10 @@ namespace bayesnet {
             mi.push_back({ i, mi_value });
         }
         sort(mi.begin(), mi.end(), [](const auto& left, const auto& right) {return left.second < right.second;});
-        auto root = mi[mi.size() - 1].first;
+        auto root = parent == -1 ? mi[mi.size() - 1].first : parent;
+        if (root >= static_cast<int>(features.size())) {
+            throw std::invalid_argument("The parent node is not in the dataset");
+        }
         // 2. Compute mutual information between each feature and the class
         auto weights_matrix = metrics.conditionalEdge(weights);
         // 3. Compute the maximum spanning tree

bayesnet/classifiers/TAN.h

@@ -9,13 +9,15 @@
 #include "Classifier.h"
 namespace bayesnet {
     class TAN : public Classifier {
-    private:
-    protected:
-        void buildModel(const torch::Tensor& weights) override;
     public:
         TAN();
         virtual ~TAN() = default;
+        void setHyperparameters(const nlohmann::json& hyperparameters_) override;
         std::vector<std::string> graph(const std::string& name = "TAN") const override;
+    protected:
+        void buildModel(const torch::Tensor& weights) override;
+    private:
+        int parent = -1;
     };
 }
 #endif

bayesnet/classifiers/TANLd.cc

@@ -8,7 +8,7 @@
 
 namespace bayesnet {
     TANLd::TANLd() : TAN(), Proposal(dataset, features, className) {}
-    TANLd& TANLd::fit(torch::Tensor& X_, torch::Tensor& y_, const std::vector<std::string>& features_, const std::string& className_, map<std::string, std::vector<int>>& states_)
+    TANLd& TANLd::fit(torch::Tensor& X_, torch::Tensor& y_, const std::vector<std::string>& features_, const std::string& className_, map<std::string, std::vector<int>>& states_, const Smoothing_t smoothing)
     {
         checkInput(X_, y_);
         features = features_;
@@ -19,7 +19,7 @@ namespace bayesnet {
         states = fit_local_discretization(y);
         // We have discretized the input data
         // 1st we need to fit the model to build the normal TAN structure, TAN::fit initializes the base Bayesian network
-        TAN::fit(dataset, features, className, states);
+        TAN::fit(dataset, features, className, states, smoothing);
         states = localDiscretizationProposal(states, model);
         return *this;
 

bayesnet/classifiers/TANLd.h

@@ -15,10 +15,9 @@ namespace bayesnet {
     public:
         TANLd();
         virtual ~TANLd() = default;
-        TANLd& fit(torch::Tensor& X, torch::Tensor& y, const std::vector<std::string>& features, const std::string& className, map<std::string, std::vector<int>>& states) override;
-        std::vector<std::string> graph(const std::string& name = "TAN") const override;
+        TANLd& fit(torch::Tensor& X, torch::Tensor& y, const std::vector<std::string>& features, const std::string& className, map<std::string, std::vector<int>>& states, const Smoothing_t smoothing) override;
+        std::vector<std::string> graph(const std::string& name = "TANLd") const override;
         torch::Tensor predict(torch::Tensor& X) override;
-        static inline std::string version() { return "0.0.1"; };
     };
 }
 #endif // !TANLD_H

bayesnet/classifiers/XSP2DE.cc

@@ -0,0 +1,575 @@
+// ***************************************************************
+// SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez
+// SPDX-FileType: SOURCE
+// SPDX-License-Identifier: MIT
+// ***************************************************************
+
+#include "XSP2DE.h"
+#include <pthread.h>   // for pthread_setname_np on linux
+#include <cassert>
+#include <cmath>
+#include <limits>
+#include <stdexcept>
+#include <iostream>
+#include "bayesnet/utils/TensorUtils.h"
+
+namespace bayesnet {
+
+// --------------------------------------
+// Constructor
+// --------------------------------------
+XSp2de::XSp2de(int spIndex1, int spIndex2)
+  : superParent1_{ spIndex1 }
+  , superParent2_{ spIndex2 }
+  , nFeatures_{0}
+  , statesClass_{0}
+  , alpha_{1.0}
+  , initializer_{1.0}
+  , semaphore_{ CountingSemaphore::getInstance() }
+  , Classifier(Network())
+{
+  validHyperparameters = { "parent1", "parent2" };
+}
+
+// --------------------------------------
+// setHyperparameters
+// --------------------------------------
+void XSp2de::setHyperparameters(const nlohmann::json &hyperparameters_)
+{
+  auto hyperparameters = hyperparameters_;
+  if (hyperparameters.contains("parent1")) {
+    superParent1_ = hyperparameters["parent1"];
+    hyperparameters.erase("parent1");
+  }
+  if (hyperparameters.contains("parent2")) {
+    superParent2_ = hyperparameters["parent2"];
+    hyperparameters.erase("parent2");
+  }
+  // Hand off anything else to base Classifier
+  Classifier::setHyperparameters(hyperparameters);
+}
+
+// --------------------------------------
+// fitx
+// --------------------------------------
+void XSp2de::fitx(torch::Tensor & X, torch::Tensor & y, 
+                  torch::Tensor & weights_, const Smoothing_t smoothing)
+{
+  m = X.size(1);  // number of samples
+  n = X.size(0);  // number of features
+  dataset = X;
+
+  // Build the dataset in your environment if needed:
+  buildDataset(y);
+
+  // Construct the data structures needed for counting
+  buildModel(weights_);
+
+  // Accumulate counts & convert to probabilities
+  trainModel(weights_, smoothing);
+  fitted = true;
+}
+
+// --------------------------------------
+// buildModel
+// --------------------------------------
+void XSp2de::buildModel(const torch::Tensor &weights)
+{
+  nFeatures_ = n;
+
+  // Derive the number of states for each feature from the dataset
+  // states_[f] = max value in dataset[f] + 1.
+  states_.resize(nFeatures_);
+  for (int f = 0; f < nFeatures_; f++) {
+    // This is naive: we take max in feature f. You might adapt for real data.
+    states_[f] = dataset[f].max().item<int>() + 1;
+  }
+  // Class states:
+  statesClass_ = dataset[-1].max().item<int>() + 1;
+
+  // Initialize the class counts
+  classCounts_.resize(statesClass_, 0.0);
+
+  // For sp1 -> p(sp1Val| c)
+  sp1FeatureCounts_.resize(states_[superParent1_] * statesClass_, 0.0);
+
+  // For sp2 -> p(sp2Val| c)
+  sp2FeatureCounts_.resize(states_[superParent2_] * statesClass_, 0.0);
+
+  // For child features, we store p(childVal | c, sp1Val, sp2Val).
+  // childCounts_ will hold raw counts. We’ll gather them in one big vector.
+  // We need an offset for each feature.
+  childOffsets_.resize(nFeatures_, -1);
+
+  int totalSize = 0;
+  for (int f = 0; f < nFeatures_; f++) {
+    if (f == superParent1_ || f == superParent2_) {
+      // skip the superparents
+      childOffsets_[f] = -1;
+      continue;
+    }
+    childOffsets_[f] = totalSize;
+    // block size for a single child f: states_[f] * statesClass_ 
+    //                               * states_[superParent1_] 
+    //                               * states_[superParent2_].
+    totalSize += (states_[f] * statesClass_ 
+                  * states_[superParent1_] 
+                  * states_[superParent2_]);
+  }
+  childCounts_.resize(totalSize, 0.0);
+}
+
+// --------------------------------------
+// trainModel
+// --------------------------------------
+void XSp2de::trainModel(const torch::Tensor &weights, 
+                        const bayesnet::Smoothing_t smoothing)
+{
+  // Accumulate raw counts
+  for (int i = 0; i < m; i++) {
+    std::vector<int> instance(nFeatures_ + 1);
+    for (int f = 0; f < nFeatures_; f++) {
+      instance[f] = dataset[f][i].item<int>();
+    }
+    instance[nFeatures_] = dataset[-1][i].item<int>();  // class
+    double w = weights[i].item<double>();
+    addSample(instance, w);
+  }
+
+  // Choose alpha based on smoothing:
+  switch (smoothing) {
+    case bayesnet::Smoothing_t::ORIGINAL:
+      alpha_ = 1.0 / m;
+      break;
+    case bayesnet::Smoothing_t::LAPLACE:
+      alpha_ = 1.0;
+      break;
+    default:
+      alpha_ = 0.0; // no smoothing
+  }
+
+  // Large initializer factor for numerical stability
+  initializer_ = std::numeric_limits<double>::max() / (nFeatures_ * nFeatures_);
+
+  // Convert raw counts to probabilities
+  computeProbabilities();
+}
+
+// --------------------------------------
+// addSample
+// --------------------------------------
+void XSp2de::addSample(const std::vector<int> &instance, double weight)
+{
+  if (weight <= 0.0)
+    return;
+
+  int c = instance.back();
+  // increment classCounts
+  classCounts_[c] += weight;
+
+  int sp1Val = instance[superParent1_];
+  int sp2Val = instance[superParent2_];
+
+  // p(sp1|c)
+  sp1FeatureCounts_[sp1Val * statesClass_ + c] += weight;
+
+  // p(sp2|c)
+  sp2FeatureCounts_[sp2Val * statesClass_ + c] += weight;
+
+  // p(childVal| c, sp1Val, sp2Val)
+  for (int f = 0; f < nFeatures_; f++) {
+    if (f == superParent1_ || f == superParent2_)
+      continue;
+
+    int childVal = instance[f];
+    int offset = childOffsets_[f];
+    // block layout: 
+    //    offset + (sp1Val*(states_[sp2_]* states_[f]* statesClass_)) 
+    //            + (sp2Val*(states_[f]* statesClass_)) 
+    //            + childVal*(statesClass_) 
+    //            + c
+    int blockSizeSp2 = states_[superParent2_] 
+                       * states_[f] 
+                       * statesClass_;
+    int blockSizeChild = states_[f] * statesClass_;
+
+    int idx = offset 
+            + sp1Val*blockSizeSp2 
+            + sp2Val*blockSizeChild 
+            + childVal*statesClass_ 
+            + c;
+    childCounts_[idx] += weight;
+  }
+}
+
+// --------------------------------------
+// computeProbabilities
+// --------------------------------------
+void XSp2de::computeProbabilities()
+{
+  double totalCount = std::accumulate(classCounts_.begin(), 
+                                      classCounts_.end(), 0.0);
+
+  // classPriors_
+  classPriors_.resize(statesClass_, 0.0);
+  if (totalCount <= 0.0) {
+    // fallback => uniform
+    double unif = 1.0 / static_cast<double>(statesClass_);
+    for (int c = 0; c < statesClass_; c++) {
+      classPriors_[c] = unif;
+    }
+  } else {
+    for (int c = 0; c < statesClass_; c++) {
+      classPriors_[c] = 
+        (classCounts_[c] + alpha_) 
+        / (totalCount + alpha_ * statesClass_);
+    }
+  }
+
+  // p(sp1Val| c)
+  sp1FeatureProbs_.resize(sp1FeatureCounts_.size());
+  int sp1Card = states_[superParent1_];
+  for (int spVal = 0; spVal < sp1Card; spVal++) {
+    for (int c = 0; c < statesClass_; c++) {
+      double denom = classCounts_[c] + alpha_ * sp1Card;
+      double num = sp1FeatureCounts_[spVal * statesClass_ + c] + alpha_;
+      sp1FeatureProbs_[spVal * statesClass_ + c] = 
+         (denom <= 0.0 ? 0.0 : num / denom);
+    }
+  }
+
+  // p(sp2Val| c)
+  sp2FeatureProbs_.resize(sp2FeatureCounts_.size());
+  int sp2Card = states_[superParent2_];
+  for (int spVal = 0; spVal < sp2Card; spVal++) {
+    for (int c = 0; c < statesClass_; c++) {
+      double denom = classCounts_[c] + alpha_ * sp2Card;
+      double num = sp2FeatureCounts_[spVal * statesClass_ + c] + alpha_;
+      sp2FeatureProbs_[spVal * statesClass_ + c] = 
+         (denom <= 0.0 ? 0.0 : num / denom);
+    }
+  }
+
+  // p(childVal| c, sp1Val, sp2Val)
+  childProbs_.resize(childCounts_.size());
+  int offset = 0;
+  for (int f = 0; f < nFeatures_; f++) {
+    if (f == superParent1_ || f == superParent2_) 
+      continue;
+
+    int fCard = states_[f];
+    int sp1Card_ = states_[superParent1_];
+    int sp2Card_ = states_[superParent2_];
+    int childBlockSizeSp2 = sp2Card_ * fCard * statesClass_;
+    int childBlockSizeF   = fCard * statesClass_;
+
+    int blockSize = fCard * sp1Card_ * sp2Card_ * statesClass_;
+    for (int sp1Val = 0; sp1Val < sp1Card_; sp1Val++) {
+      for (int sp2Val = 0; sp2Val < sp2Card_; sp2Val++) {
+        for (int childVal = 0; childVal < fCard; childVal++) {
+          for (int c = 0; c < statesClass_; c++) {
+            // index in childCounts_ 
+            int idx = offset 
+                    + sp1Val*childBlockSizeSp2 
+                    + sp2Val*childBlockSizeF 
+                    + childVal*statesClass_ 
+                    + c;
+            double num = childCounts_[idx] + alpha_;
+            // denominator is the count of (sp1Val,sp2Val,c) plus alpha * fCard
+            // We can find that by summing childVal dimension, but we already
+            // have it in childCounts_[...] or we can re-check the superparent 
+            // counts if your approach is purely hierarchical. 
+            // Here we'll do it like the XSpode approach: sp1&sp2 are 
+            // conditionally independent given c, so denominators come from 
+            // summing the relevant block or we treat sp1,sp2 as "parents."
+            // A simpler approach: 
+            double sumSp1Sp2C = 0.0;
+            // sum over all childVal:
+            for (int cv = 0; cv < fCard; cv++) {
+              int idx2 = offset
+                       + sp1Val*childBlockSizeSp2
+                       + sp2Val*childBlockSizeF
+                       + cv*statesClass_ + c;
+              sumSp1Sp2C += childCounts_[idx2];
+            }
+            double denom = sumSp1Sp2C + alpha_ * fCard;
+            childProbs_[idx] = (denom <= 0.0 ? 0.0 : num / denom);
+          }
+        }
+      }
+    }
+    offset += blockSize;
+  }
+}
+
+// --------------------------------------
+// predict_proba (single instance)
+// --------------------------------------
+std::vector<double> XSp2de::predict_proba(const std::vector<int> &instance) const
+{
+  if (!fitted) {
+    throw std::logic_error(CLASSIFIER_NOT_FITTED);
+  }
+  std::vector<double> probs(statesClass_, 0.0);
+
+  int sp1Val = instance[superParent1_];
+  int sp2Val = instance[superParent2_];
+
+  // Start with p(c) * p(sp1Val| c) * p(sp2Val| c)
+  for (int c = 0; c < statesClass_; c++) {
+    double pC = classPriors_[c];
+    double pSp1C = sp1FeatureProbs_[sp1Val * statesClass_ + c];
+    double pSp2C = sp2FeatureProbs_[sp2Val * statesClass_ + c];
+    probs[c] = pC * pSp1C * pSp2C * initializer_;
+  }
+
+  // Multiply by each child feature f
+  int offset = 0;
+  for (int f = 0; f < nFeatures_; f++) {
+    if (f == superParent1_ || f == superParent2_) 
+      continue;
+
+    int valF = instance[f];
+    int fCard = states_[f];
+    int sp1Card = states_[superParent1_];
+    int sp2Card = states_[superParent2_];
+    int blockSizeSp2 = sp2Card * fCard * statesClass_;
+    int blockSizeF   = fCard * statesClass_;
+
+    // base index for childProbs_ for this child and sp1Val, sp2Val
+    int base = offset 
+             + sp1Val*blockSizeSp2 
+             + sp2Val*blockSizeF 
+             + valF*statesClass_;
+    for (int c = 0; c < statesClass_; c++) {
+      probs[c] *= childProbs_[base + c];
+    }
+    offset += (fCard * sp1Card * sp2Card * statesClass_);
+  }
+
+  // Normalize
+  normalize(probs);
+  return probs;
+}
+
+// --------------------------------------
+// predict_proba (batch)
+// --------------------------------------
+std::vector<std::vector<double>> XSp2de::predict_proba(std::vector<std::vector<int>> &test_data)
+{
+  int test_size = test_data[0].size();  // each feature is test_data[f], size = #samples
+  int sample_size = test_data.size();   // = nFeatures_
+  std::vector<std::vector<double>> probabilities(
+      test_size, std::vector<double>(statesClass_, 0.0));
+
+  // same concurrency approach
+  int chunk_size = std::min(150, int(test_size / semaphore_.getMaxCount()) + 1);
+  std::vector<std::thread> threads;
+
+  auto worker = [&](const std::vector<std::vector<int>> &samples, 
+                    int begin, 
+                    int chunk, 
+                    int sample_size, 
+                    std::vector<std::vector<double>> &predictions) {
+    std::string threadName =
+      "XSp2de-" + std::to_string(begin) + "-" + std::to_string(chunk);
+#if defined(__linux__)
+    pthread_setname_np(pthread_self(), threadName.c_str());
+#else
+    pthread_setname_np(threadName.c_str());
+#endif
+
+    std::vector<int> instance(sample_size);
+    for (int sample = begin; sample < begin + chunk; ++sample) {
+      for (int feature = 0; feature < sample_size; ++feature) {
+        instance[feature] = samples[feature][sample];
+      }
+      predictions[sample] = predict_proba(instance);
+    }
+    semaphore_.release();
+  };
+
+  for (int begin = 0; begin < test_size; begin += chunk_size) {
+    int chunk = std::min(chunk_size, test_size - begin);
+    semaphore_.acquire();
+    threads.emplace_back(worker, test_data, begin, chunk, sample_size, 
+                         std::ref(probabilities));
+  }
+  for (auto &th : threads) {
+    th.join();
+  }
+  return probabilities;
+}
+
+// --------------------------------------
+// predict (single instance)
+// --------------------------------------
+int XSp2de::predict(const std::vector<int> &instance) const
+{
+  auto p = predict_proba(instance);
+  return static_cast<int>(
+    std::distance(p.begin(), std::max_element(p.begin(), p.end()))
+  );
+}
+
+// --------------------------------------
+// predict (batch of data)
+// --------------------------------------
+std::vector<int> XSp2de::predict(std::vector<std::vector<int>> &test_data)
+{
+  auto probabilities = predict_proba(test_data);
+  std::vector<int> predictions(probabilities.size(), 0);
+
+  for (size_t i = 0; i < probabilities.size(); i++) {
+    predictions[i] = static_cast<int>(
+      std::distance(probabilities[i].begin(), 
+                    std::max_element(probabilities[i].begin(), 
+                                     probabilities[i].end()))
+    );
+  }
+  return predictions;
+}
+
+// --------------------------------------
+// predict (torch::Tensor version)
+// --------------------------------------
+torch::Tensor XSp2de::predict(torch::Tensor &X)
+{
+  auto X_ = TensorUtils::to_matrix(X);
+  auto result_v = predict(X_);
+  return torch::tensor(result_v, torch::kInt32);
+}
+
+// --------------------------------------
+// predict_proba (torch::Tensor version)
+// --------------------------------------
+torch::Tensor XSp2de::predict_proba(torch::Tensor &X)
+{
+  auto X_ = TensorUtils::to_matrix(X);
+  auto result_v = predict_proba(X_);
+  int n_samples = X.size(1);
+  torch::Tensor result =
+    torch::zeros({ n_samples, statesClass_ }, torch::kDouble);
+  for (int i = 0; i < (int)result_v.size(); ++i) {
+    result.index_put_({ i, "..." }, torch::tensor(result_v[i]));
+  }
+  return result;
+}
+
+// --------------------------------------
+// score (torch::Tensor version)
+// --------------------------------------
+float XSp2de::score(torch::Tensor &X, torch::Tensor &y)
+{
+  torch::Tensor y_pred = predict(X);
+  return (y_pred == y).sum().item<float>() / y.size(0);
+}
+
+// --------------------------------------
+// score (vector version)
+// --------------------------------------
+float XSp2de::score(std::vector<std::vector<int>> &X, std::vector<int> &y)
+{
+  auto y_pred = predict(X);
+  int correct = 0;
+  for (size_t i = 0; i < y_pred.size(); ++i) {
+    if (y_pred[i] == y[i]) {
+      correct++;
+    }
+  }
+  return static_cast<float>(correct) / static_cast<float>(y_pred.size());
+}
+
+// --------------------------------------
+// Utility: normalize
+// --------------------------------------
+void XSp2de::normalize(std::vector<double> &v) const
+{
+  double sum = 0.0;
+  for (auto &val : v) {
+    sum += val;
+  }
+  if (sum > 0.0) {
+    for (auto &val : v) {
+      val /= sum;
+    }
+  }
+}
+
+// --------------------------------------
+// to_string
+// --------------------------------------
+std::string XSp2de::to_string() const
+{
+  std::ostringstream oss;
+  oss << "----- XSp2de Model -----\n"
+      << "nFeatures_    = " << nFeatures_    << "\n"
+      << "superParent1_ = " << superParent1_ << "\n"
+      << "superParent2_ = " << superParent2_ << "\n"
+      << "statesClass_  = " << statesClass_  << "\n\n";
+
+  oss << "States: [";
+  for (auto s : states_) oss << s << " ";
+  oss << "]\n";
+
+  oss << "classCounts_:\n";
+  for (auto v : classCounts_) oss << v << " ";
+  oss << "\nclassPriors_:\n";
+  for (auto v : classPriors_) oss << v << " ";
+  oss << "\nsp1FeatureCounts_ (size=" << sp1FeatureCounts_.size() << ")\n";
+  for (auto v : sp1FeatureCounts_) oss << v << " ";
+  oss << "\nsp2FeatureCounts_ (size=" << sp2FeatureCounts_.size() << ")\n";
+  for (auto v : sp2FeatureCounts_) oss << v << " ";
+  oss << "\nchildCounts_ (size=" << childCounts_.size() << ")\n";
+  for (auto v : childCounts_) oss << v << " ";
+
+  oss << "\nchildOffsets_:\n";
+  for (auto c : childOffsets_) oss << c << " ";
+
+  oss << "\n----------------------------------------\n";
+  return oss.str();
+}
+
+// --------------------------------------
+// Some introspection about the graph
+// --------------------------------------
+int XSp2de::getNumberOfNodes() const 
+{
+  // nFeatures + 1 class node
+  return nFeatures_ + 1;
+}
+
+int XSp2de::getClassNumStates() const 
+{ 
+  return statesClass_; 
+}
+
+int XSp2de::getNFeatures() const 
+{ 
+  return nFeatures_; 
+}
+
+int XSp2de::getNumberOfStates() const
+{
+  // purely an example. Possibly you want to sum up actual 
+  // cardinalities or something else. 
+  return std::accumulate(states_.begin(), states_.end(), 0) * nFeatures_;
+}
+
+int XSp2de::getNumberOfEdges() const
+{
+  // In an SPNDE with n=2, for each feature we have edges from class, sp1, sp2. 
+  // So that’s 3*(nFeatures_) edges, minus the ones for the superparents themselves, 
+  // plus the edges from class->superparent1, class->superparent2. 
+  // For a quick approximation:
+  //   - class->sp1, class->sp2 => 2 edges
+  //   - class->child => (nFeatures -2) edges
+  //   - sp1->child, sp2->child => 2*(nFeatures -2) edges
+  // total = 2 + (nFeatures-2) + 2*(nFeatures-2) = 2 + 3*(nFeatures-2) 
+  //         = 3nFeatures - 4 (just an example).
+  // You can adapt to your liking:
+  return 3 * nFeatures_ - 4; 
+}
+
+} // namespace bayesnet
+

bayesnet/classifiers/XSP2DE.h

@@ -0,0 +1,75 @@
+// ***************************************************************
+// SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez
+// SPDX-FileType: SOURCE
+// SPDX-License-Identifier: MIT
+// ***************************************************************
+
+#ifndef XSP2DE_H
+#define XSP2DE_H
+
+#include "Classifier.h"
+#include "bayesnet/utils/CountingSemaphore.h"
+#include <torch/torch.h>
+#include <vector>
+
+namespace bayesnet {
+
+class XSp2de : public Classifier {
+  public:
+    XSp2de(int spIndex1, int spIndex2);
+    void setHyperparameters(const nlohmann::json &hyperparameters_) override;
+    void fitx(torch::Tensor &X, torch::Tensor &y, torch::Tensor &weights_, const Smoothing_t smoothing);
+    std::vector<double> predict_proba(const std::vector<int> &instance) const;
+    std::vector<std::vector<double>> predict_proba(std::vector<std::vector<int>> &test_data) override;
+    int predict(const std::vector<int> &instance) const;
+    std::vector<int> predict(std::vector<std::vector<int>> &test_data) override;
+    torch::Tensor predict(torch::Tensor &X) override;
+    torch::Tensor predict_proba(torch::Tensor &X) override;
+
+    float score(torch::Tensor &X, torch::Tensor &y) override;
+    float score(std::vector<std::vector<int>> &X, std::vector<int> &y) override;
+    std::string to_string() const;
+    std::vector<std::string> graph(const std::string &title) const override {
+        return std::vector<std::string>({title});
+    }
+
+    int getNumberOfNodes() const override;
+    int getNumberOfEdges() const override;
+    int getNFeatures() const;
+    int getClassNumStates() const override;
+    int getNumberOfStates() const override;
+
+  protected:
+    void buildModel(const torch::Tensor &weights) override;
+    void trainModel(const torch::Tensor &weights, const bayesnet::Smoothing_t smoothing) override;
+
+  private:
+    void addSample(const std::vector<int> &instance, double weight);
+    void normalize(std::vector<double> &v) const;
+    void computeProbabilities();
+
+    int superParent1_;
+    int superParent2_;
+    int nFeatures_;
+    int statesClass_;
+    double alpha_;
+    double initializer_;
+
+    std::vector<int> states_;
+    std::vector<double> classCounts_;
+    std::vector<double> classPriors_;
+    std::vector<double> sp1FeatureCounts_, sp1FeatureProbs_;
+    std::vector<double> sp2FeatureCounts_, sp2FeatureProbs_;
+    // childOffsets_[f] will be the offset into childCounts_ for feature f.
+    // If f is either superParent1 or superParent2, childOffsets_[f] = -1
+    std::vector<int> childOffsets_;
+    // For each child f, we store p(x_f | c, sp1Val, sp2Val).  We'll store the raw
+    // counts in childCounts_, and the probabilities in childProbs_, with a
+    // dimension block of size: states_[f]* statesClass_* states_[sp1]* states_[sp2].
+    std::vector<double> childCounts_;
+    std::vector<double> childProbs_;
+    CountingSemaphore &semaphore_;
+};
+
+} // namespace bayesnet
+#endif // XSP2DE_H

bayesnet/classifiers/XSPODE.cc

@@ -0,0 +1,450 @@
+// ***************************************************************
+// SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez
+// SPDX-FileType: SOURCE
+// SPDX-License-Identifier: MIT
+// ***************************************************************
+#include <algorithm>
+#include <cmath>
+#include <limits>
+#include <numeric>
+#include <sstream>
+#include <stdexcept>
+#include "XSPODE.h"
+#include "bayesnet/utils/TensorUtils.h"
+
+namespace bayesnet {
+
+  // --------------------------------------
+  // Constructor
+  // --------------------------------------
+  XSpode::XSpode(int spIndex)
+    : superParent_{ spIndex }, nFeatures_{ 0 }, statesClass_{ 0 }, alpha_{ 1.0 },
+    initializer_{ 1.0 }, semaphore_{ CountingSemaphore::getInstance() },
+    Classifier(Network())
+  {
+    validHyperparameters = { "parent" };
+  }
+
+  void XSpode::setHyperparameters(const nlohmann::json& hyperparameters_)
+  {
+    auto hyperparameters = hyperparameters_;
+    if (hyperparameters.contains("parent")) {
+      superParent_ = hyperparameters["parent"];
+      hyperparameters.erase("parent");
+    }
+    Classifier::setHyperparameters(hyperparameters);
+  }
+
+  void XSpode::fitx(torch::Tensor & X, torch::Tensor& y, torch::Tensor& weights_, const Smoothing_t smoothing)
+  {
+    m = X.size(1);
+    n = X.size(0);
+    dataset = X;
+    buildDataset(y);
+    buildModel(weights_);
+    trainModel(weights_, smoothing);
+    fitted = true;
+  }
+
+  // --------------------------------------
+  // trainModel
+  // --------------------------------------
+  // Initialize storage needed for the super-parent and child features counts and
+  // probs.
+  // --------------------------------------
+  void XSpode::buildModel(const torch::Tensor& weights)
+  {
+    int numInstances = m;
+    nFeatures_ = n;
+
+    // Derive the number of states for each feature and for the class.
+    // (This is just one approach; adapt to match your environment.)
+    // Here, we assume the user also gave us the total #states per feature in e.g.
+    // statesMap. We'll simply reconstruct the integer states_ array. The last
+    // entry is statesClass_.
+    states_.resize(nFeatures_);
+    for (int f = 0; f < nFeatures_; f++) {
+      // Suppose you look up in “statesMap” by the feature name, or read directly
+      // from X. We'll assume states_[f] = max value in X[f] + 1.
+      states_[f] = dataset[f].max().item<int>() + 1;
+    }
+    // For the class: states_.back() = max(y)+1
+    statesClass_ = dataset[-1].max().item<int>() + 1;
+
+    // Initialize counts
+    classCounts_.resize(statesClass_, 0.0);
+    // p(x_sp = spVal | c)
+    // We'll store these counts in spFeatureCounts_[spVal * statesClass_ + c].
+    spFeatureCounts_.resize(states_[superParent_] * statesClass_, 0.0);
+
+    // For each child ≠ sp, we store p(childVal| c, spVal) in a separate block of
+    // childCounts_. childCounts_ will be sized as sum_{child≠sp} (states_[child]
+    // * statesClass_ * states_[sp]). We also need an offset for each child to
+    // index into childCounts_.
+    childOffsets_.resize(nFeatures_, -1);
+    int totalSize = 0;
+    for (int f = 0; f < nFeatures_; f++) {
+      if (f == superParent_)
+        continue; // skip sp
+      childOffsets_[f] = totalSize;
+      // block size for this child's counts: states_[f] * statesClass_ *
+      // states_[superParent_]
+      totalSize += (states_[f] * statesClass_ * states_[superParent_]);
+    }
+    childCounts_.resize(totalSize, 0.0);
+  }
+  // --------------------------------------
+  // buildModel
+  // --------------------------------------
+  //
+  // We only store conditional probabilities for:
+  //   p(x_sp| c)   (the super-parent feature)
+  //   p(x_child| c, x_sp)  for all child ≠ sp
+  //
+  // --------------------------------------
+  void XSpode::trainModel(const torch::Tensor& weights,
+    const bayesnet::Smoothing_t smoothing)
+  {
+    // Accumulate raw counts
+    for (int i = 0; i < m; i++) {
+      std::vector<int> instance(nFeatures_ + 1);
+      for (int f = 0; f < nFeatures_; f++) {
+        instance[f] = dataset[f][i].item<int>();
+      }
+      instance[nFeatures_] = dataset[-1][i].item<int>();
+      addSample(instance, weights[i].item<double>());
+    }
+    switch (smoothing) {
+      case bayesnet::Smoothing_t::ORIGINAL:
+        alpha_ = 1.0 / m;
+        break;
+      case bayesnet::Smoothing_t::LAPLACE:
+        alpha_ = 1.0;
+        break;
+      default:
+        alpha_ = 0.0; // No smoothing
+    }
+    initializer_ = std::numeric_limits<double>::max() /
+      (nFeatures_ * nFeatures_); // for numerical stability
+    // Convert raw counts to probabilities
+    computeProbabilities();
+  }
+
+  // --------------------------------------
+  // addSample
+  // --------------------------------------
+  //
+  // instance has size nFeatures_ + 1, with the class at the end.
+  // We add 1 to the appropriate counters for each (c, superParentVal, childVal).
+  //
+  void XSpode::addSample(const std::vector<int>& instance, double weight)
+  {
+    if (weight <= 0.0)
+      return;
+
+    int c = instance.back();
+    // (A) increment classCounts
+    classCounts_[c] += weight;
+
+    // (B) increment super-parent counts => p(x_sp | c)
+    int spVal = instance[superParent_];
+    spFeatureCounts_[spVal * statesClass_ + c] += weight;
+
+    // (C) increment child counts => p(childVal | c, x_sp)
+    for (int f = 0; f < nFeatures_; f++) {
+      if (f == superParent_)
+        continue;
+      int childVal = instance[f];
+      int offset = childOffsets_[f];
+      // Compute index in childCounts_.
+      // Layout: [ offset + (spVal * states_[f] + childVal) * statesClass_ + c ]
+      int blockSize = states_[f] * statesClass_;
+      int idx = offset + spVal * blockSize + childVal * statesClass_ + c;
+      childCounts_[idx] += weight;
+    }
+  }
+
+  // --------------------------------------
+  // computeProbabilities
+  // --------------------------------------
+  //
+  // Once all samples are added in COUNTS mode, call this to:
+  //    p(c)
+  //    p(x_sp = spVal | c)
+  //    p(x_child = v | c, x_sp = s_sp)
+  //
+  // --------------------------------------
+  void XSpode::computeProbabilities()
+  {
+    double totalCount =
+      std::accumulate(classCounts_.begin(), classCounts_.end(), 0.0);
+
+    // p(c) => classPriors_
+    classPriors_.resize(statesClass_, 0.0);
+    if (totalCount <= 0.0) {
+      // fallback => uniform
+      double unif = 1.0 / static_cast<double>(statesClass_);
+      for (int c = 0; c < statesClass_; c++) {
+        classPriors_[c] = unif;
+      }
+    } else {
+      for (int c = 0; c < statesClass_; c++) {
+        classPriors_[c] =
+          (classCounts_[c] + alpha_) / (totalCount + alpha_ * statesClass_);
+      }
+    }
+
+    // p(x_sp | c)
+    spFeatureProbs_.resize(spFeatureCounts_.size());
+    // denominator for spVal * statesClass_ + c is just classCounts_[c] + alpha_ *
+    // (#states of sp)
+    int spCard = states_[superParent_];
+    for (int spVal = 0; spVal < spCard; spVal++) {
+      for (int c = 0; c < statesClass_; c++) {
+        double denom = classCounts_[c] + alpha_ * spCard;
+        double num = spFeatureCounts_[spVal * statesClass_ + c] + alpha_;
+        spFeatureProbs_[spVal * statesClass_ + c] = (denom <= 0.0 ? 0.0 : num / denom);
+      }
+    }
+
+    // p(x_child | c, x_sp)
+    childProbs_.resize(childCounts_.size());
+    for (int f = 0; f < nFeatures_; f++) {
+      if (f == superParent_)
+        continue;
+      int offset = childOffsets_[f];
+      int childCard = states_[f];
+
+      // For each spVal, c, childVal in childCounts_:
+      for (int spVal = 0; spVal < spCard; spVal++) {
+        for (int childVal = 0; childVal < childCard; childVal++) {
+          for (int c = 0; c < statesClass_; c++) {
+            int idx = offset + spVal * (childCard * statesClass_) +
+              childVal * statesClass_ + c;
+
+            double num = childCounts_[idx] + alpha_;
+            // denominator = spFeatureCounts_[spVal * statesClass_ + c] + alpha_ *
+            // (#states of child)
+            double denom =
+              spFeatureCounts_[spVal * statesClass_ + c] + alpha_ * childCard;
+            childProbs_[idx] = (denom <= 0.0 ? 0.0 : num / denom);
+          }
+        }
+      }
+    }
+  }
+
+  // --------------------------------------
+  // predict_proba
+  // --------------------------------------
+  //
+  // For a single instance x of dimension nFeatures_:
+  //  P(c | x) ∝ p(c) × p(x_sp | c) × ∏(child ≠ sp) p(x_child | c, x_sp).
+  //
+  // --------------------------------------
+  std::vector<double> XSpode::predict_proba(const std::vector<int>& instance) const
+  {
+    if (!fitted) {
+      throw std::logic_error(CLASSIFIER_NOT_FITTED);
+    }
+    std::vector<double> probs(statesClass_, 0.0);
+    // Multiply p(c) × p(x_sp | c)
+    int spVal = instance[superParent_];
+    for (int c = 0; c < statesClass_; c++) {
+      double pc = classPriors_[c];
+      double pSpC = spFeatureProbs_[spVal * statesClass_ + c];
+      probs[c] = pc * pSpC * initializer_;
+    }
+
+    // Multiply by each child’s probability p(x_child | c, x_sp)
+    for (int feature = 0; feature < nFeatures_; feature++) {
+      if (feature == superParent_)
+        continue; // skip sp
+      int sf = instance[feature];
+      int offset = childOffsets_[feature];
+      int childCard = states_[feature]; // not used directly, but for clarity
+      // Index into childProbs_ = offset + spVal*(childCard*statesClass_) +
+      // childVal*statesClass_ + c
+      int base = offset + spVal * (childCard * statesClass_) + sf * statesClass_;
+      for (int c = 0; c < statesClass_; c++) {
+        probs[c] *= childProbs_[base + c];
+      }
+    }
+
+    // Normalize
+    normalize(probs);
+    return probs;
+  }
+  std::vector<std::vector<double>> XSpode::predict_proba(std::vector<std::vector<int>>& test_data)
+  {
+    int test_size = test_data[0].size();
+    int sample_size = test_data.size();
+    auto probabilities = std::vector<std::vector<double>>(
+      test_size, std::vector<double>(statesClass_));
+
+    int chunk_size = std::min(150, int(test_size / semaphore_.getMaxCount()) + 1);
+    std::vector<std::thread> threads;
+    auto worker = [&](const std::vector<std::vector<int>>& samples, int begin,
+      int chunk, int sample_size,
+      std::vector<std::vector<double>>& predictions) {
+        std::string threadName =
+          "(V)PWorker-" + std::to_string(begin) + "-" + std::to_string(chunk);
+#if defined(__linux__)
+        pthread_setname_np(pthread_self(), threadName.c_str());
+#else
+        pthread_setname_np(threadName.c_str());
+#endif
+
+        std::vector<int> instance(sample_size);
+        for (int sample = begin; sample < begin + chunk; ++sample) {
+          for (int feature = 0; feature < sample_size; ++feature) {
+            instance[feature] = samples[feature][sample];
+          }
+          predictions[sample] = predict_proba(instance);
+        }
+        semaphore_.release();
+      };
+    for (int begin = 0; begin < test_size; begin += chunk_size) {
+      int chunk = std::min(chunk_size, test_size - begin);
+      semaphore_.acquire();
+      threads.emplace_back(worker, test_data, begin, chunk, sample_size, std::ref(probabilities));
+    }
+    for (auto& thread : threads) {
+      thread.join();
+    }
+    return probabilities;
+  }
+
+  // --------------------------------------
+  // Utility: normalize
+  // --------------------------------------
+  void XSpode::normalize(std::vector<double>& v) const
+  {
+    double sum = 0.0;
+    for (auto val : v) {
+      sum += val;
+    }
+    if (sum <= 0.0) {
+      return;
+    }
+    for (auto& val : v) {
+      val /= sum;
+    }
+  }
+
+  // --------------------------------------
+  // representation of the model
+  // --------------------------------------
+  std::string XSpode::to_string() const
+  {
+    std::ostringstream oss;
+    oss << "----- XSpode Model -----" << std::endl
+      << "nFeatures_  = " << nFeatures_ << std::endl
+      << "superParent_ = " << superParent_ << std::endl
+      << "statesClass_ = " << statesClass_ << std::endl
+      << std::endl;
+
+    oss << "States: [";
+    for (int s : states_)
+      oss << s << " ";
+    oss << "]" << std::endl;
+    oss << "classCounts_: [";
+    for (double c : classCounts_)
+      oss << c << " ";
+    oss << "]" << std::endl;
+    oss << "classPriors_: [";
+    for (double c : classPriors_)
+      oss << c << " ";
+    oss << "]" << std::endl;
+    oss << "spFeatureCounts_: size = " << spFeatureCounts_.size() << std::endl
+      << "[";
+    for (double c : spFeatureCounts_)
+      oss << c << " ";
+    oss << "]" << std::endl;
+    oss << "spFeatureProbs_: size = " << spFeatureProbs_.size() << std::endl
+      << "[";
+    for (double c : spFeatureProbs_)
+      oss << c << " ";
+    oss << "]" << std::endl;
+    oss << "childCounts_: size = " << childCounts_.size() << std::endl << "[";
+    for (double cc : childCounts_)
+      oss << cc << " ";
+    oss << "]" << std::endl;
+
+    for (double cp : childProbs_)
+      oss << cp << " ";
+    oss << "]" << std::endl;
+    oss << "childOffsets_: [";
+    for (int co : childOffsets_)
+      oss << co << " ";
+    oss << "]" << std::endl;
+    oss << std::string(40,'-') << std::endl;
+    return oss.str();
+  }
+  int XSpode::getNumberOfNodes() const { return nFeatures_ + 1; }
+  int XSpode::getClassNumStates() const { return statesClass_; }
+  int XSpode::getNFeatures() const { return nFeatures_; }
+  int XSpode::getNumberOfStates() const
+  {
+    return std::accumulate(states_.begin(), states_.end(), 0) * nFeatures_;
+  }
+  int XSpode::getNumberOfEdges() const
+  {
+    return 2 * nFeatures_ + 1;
+  }
+
+  // ------------------------------------------------------
+  // Predict overrides (classifier interface)
+  // ------------------------------------------------------
+  int XSpode::predict(const std::vector<int>& instance) const
+  {
+    auto p = predict_proba(instance);
+    return static_cast<int>(std::distance(p.begin(), std::max_element(p.begin(), p.end())));
+  }
+  std::vector<int> XSpode::predict(std::vector<std::vector<int>>& test_data)
+  {
+    auto probabilities = predict_proba(test_data);
+    std::vector<int> predictions(probabilities.size(), 0);
+
+    for (size_t i = 0; i < probabilities.size(); i++) {
+      predictions[i] = std::distance(
+        probabilities[i].begin(),
+        std::max_element(probabilities[i].begin(), probabilities[i].end()));
+    }
+    return predictions;
+  }
+  torch::Tensor XSpode::predict(torch::Tensor& X)
+  {
+    auto X_ = TensorUtils::to_matrix(X);
+    auto result_v = predict(X_);
+    return torch::tensor(result_v, torch::kInt32);
+  }
+  torch::Tensor XSpode::predict_proba(torch::Tensor& X)
+  {
+    auto X_ = TensorUtils::to_matrix(X);
+    auto result_v = predict_proba(X_);
+    int n_samples = X.size(1);
+    torch::Tensor result =
+      torch::zeros({ n_samples, statesClass_ }, torch::kDouble);
+    for (int i = 0; i < result_v.size(); ++i) {
+      result.index_put_({ i, "..." }, torch::tensor(result_v[i]));
+    }
+    return result;
+  }
+  float XSpode::score(torch::Tensor& X, torch::Tensor& y)
+  {
+    torch::Tensor y_pred = predict(X);
+    return (y_pred == y).sum().item<float>() / y.size(0);
+  }
+  float XSpode::score(std::vector<std::vector<int>>& X, std::vector<int>& y)
+  {
+    auto y_pred = this->predict(X);
+    int correct = 0;
+    for (int i = 0; i < y_pred.size(); ++i) {
+      if (y_pred[i] == y[i]) {
+        correct++;
+      }
+    }
+    return (double)correct / y_pred.size();
+  }
+} // namespace bayesnet

bayesnet/classifiers/XSPODE.h

@@ -0,0 +1,76 @@
+// ***************************************************************
+// SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez
+// SPDX-FileType: SOURCE
+// SPDX-License-Identifier: MIT
+// ***************************************************************
+
+#ifndef XSPODE_H
+#define XSPODE_H
+
+#include <vector>
+#include <torch/torch.h>
+#include "Classifier.h"
+#include "bayesnet/utils/CountingSemaphore.h"
+
+namespace bayesnet {
+
+    class XSpode : public Classifier {
+    public:
+        explicit XSpode(int spIndex);
+        std::vector<double> predict_proba(const std::vector<int>& instance) const;
+        std::vector<std::vector<double>> predict_proba(std::vector<std::vector<int>>& X) override;
+        int predict(const std::vector<int>& instance) const;
+        void normalize(std::vector<double>& v) const;
+        std::string to_string() const;
+        int getNFeatures() const;
+        int getNumberOfNodes() const override;
+        int getNumberOfEdges() const override;
+        int getNumberOfStates() const override;
+        int getClassNumStates() const override;
+        std::vector<int>& getStates();
+        std::vector<std::string> graph(const std::string& title) const override { return std::vector<std::string>({ title }); }
+        void fitx(torch::Tensor& X, torch::Tensor& y, torch::Tensor& weights_, const Smoothing_t smoothing);
+        void setHyperparameters(const nlohmann::json& hyperparameters_) override;
+
+        //
+        // Classifier interface
+        //
+        torch::Tensor predict(torch::Tensor& X) override;
+        std::vector<int> predict(std::vector<std::vector<int>>& X) override;
+        torch::Tensor predict_proba(torch::Tensor& X) override;
+        float score(torch::Tensor& X, torch::Tensor& y) override;
+        float score(std::vector<std::vector<int>>& X, std::vector<int>& y) override;
+    protected:
+        void buildModel(const torch::Tensor& weights) override;
+        void trainModel(const torch::Tensor& weights, const bayesnet::Smoothing_t smoothing) override;
+    private:
+        void addSample(const std::vector<int>& instance, double weight);
+        void computeProbabilities();
+        int superParent_;
+        int nFeatures_;
+        int statesClass_;
+        std::vector<int> states_;          // [states_feat0, ..., states_feat(N-1)] (class not included in this array)
+
+        // Class counts
+        std::vector<double> classCounts_;  // [c], accumulative
+        std::vector<double> classPriors_;  // [c], after normalization
+
+        // For p(x_sp = spVal | c)
+        std::vector<double> spFeatureCounts_; // [spVal * statesClass_ + c]
+        std::vector<double> spFeatureProbs_;  // same shape, after normalization
+
+        // For p(x_child = childVal | x_sp = spVal, c)
+        // childCounts_ is big enough to hold all child features except sp:
+        //   For each child f, we store childOffsets_[f] as the start index, then
+        //   childVal, spVal, c => the data.
+        std::vector<double> childCounts_;
+        std::vector<double> childProbs_;
+        std::vector<int>    childOffsets_;
+
+        double alpha_ = 1.0;
+        double initializer_; // for numerical stability
+        CountingSemaphore& semaphore_;
+    };
+}
+
+#endif // XSPODE_H

bayesnet/ensembles/A2DE.cc

@@ -0,0 +1,40 @@
+// ***************************************************************
+// SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez
+// SPDX-FileType: SOURCE
+// SPDX-License-Identifier: MIT
+// ***************************************************************
+
+#include "A2DE.h"
+
+namespace bayesnet {
+    A2DE::A2DE(bool predict_voting) : Ensemble(predict_voting)
+    {
+        validHyperparameters = { "predict_voting" };
+    }
+    void A2DE::setHyperparameters(const nlohmann::json& hyperparameters_)
+    {
+        auto hyperparameters = hyperparameters_;
+        if (hyperparameters.contains("predict_voting")) {
+            predict_voting = hyperparameters["predict_voting"];
+            hyperparameters.erase("predict_voting");
+        }
+        Classifier::setHyperparameters(hyperparameters);
+    }
+    void A2DE::buildModel(const torch::Tensor& weights)
+    {
+        models.clear();
+        significanceModels.clear();
+        for (int i = 0; i < features.size() - 1; ++i) {
+            for (int j = i + 1; j < features.size(); ++j) {
+                auto model = std::make_unique<SPnDE>(std::vector<int>({ i, j }));
+                models.push_back(std::move(model));
+            }
+        }
+        n_models = static_cast<unsigned>(models.size());
+        significanceModels = std::vector<double>(n_models, 1.0);
+    }
+    std::vector<std::string> A2DE::graph(const std::string& title) const
+    {
+        return Ensemble::graph(title);
+    }
+}

bayesnet/ensembles/A2DE.h

@@ -0,0 +1,22 @@
+// ***************************************************************
+// SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez
+// SPDX-FileType: SOURCE
+// SPDX-License-Identifier: MIT
+// ***************************************************************
+
+#ifndef A2DE_H
+#define A2DE_H
+#include "bayesnet/classifiers/SPnDE.h"
+#include "Ensemble.h"
+namespace bayesnet {
+    class A2DE : public Ensemble {
+    public:
+        A2DE(bool predict_voting = false);
+        virtual ~A2DE() {};
+        void setHyperparameters(const nlohmann::json& hyperparameters) override;
+        std::vector<std::string> graph(const std::string& title = "A2DE") const override;
+    protected:
+        void buildModel(const torch::Tensor& weights) override;
+    };
+}
+#endif

bayesnet/ensembles/AODELd.cc

@@ -10,7 +10,7 @@ namespace bayesnet {
     AODELd::AODELd(bool predict_voting) : Ensemble(predict_voting), Proposal(dataset, features, className)
     {
     }
-    AODELd& AODELd::fit(torch::Tensor& X_, torch::Tensor& y_, const std::vector<std::string>& features_, const std::string& className_, map<std::string, std::vector<int>>& states_)
+    AODELd& AODELd::fit(torch::Tensor& X_, torch::Tensor& y_, const std::vector<std::string>& features_, const std::string& className_, map<std::string, std::vector<int>>& states_, const Smoothing_t smoothing)
     {
         checkInput(X_, y_);
         features = features_;
@@ -20,8 +20,9 @@ namespace bayesnet {
         // Fills std::vectors Xv & yv with the data from tensors X_ (discretized) & y
         states = fit_local_discretization(y);
         // We have discretized the input data
-        // 1st we need to fit the model to build the normal TAN structure, TAN::fit initializes the base Bayesian network
-        Ensemble::fit(dataset, features, className, states);
+        // 1st we need to fit the model to build the normal AODE structure, Ensemble::fit  
+        // calls buildModel to initialize the base models
+        Ensemble::fit(dataset, features, className, states, smoothing);
         return *this;
 
     }
@@ -34,10 +35,10 @@ namespace bayesnet {
         n_models = models.size();
         significanceModels = std::vector<double>(n_models, 1.0);
     }
-    void AODELd::trainModel(const torch::Tensor& weights)
+    void AODELd::trainModel(const torch::Tensor& weights, const Smoothing_t smoothing)
     {
         for (const auto& model : models) {
-            model->fit(Xf, y, features, className, states);
+            model->fit(Xf, y, features, className, states, smoothing);
         }
     }
     std::vector<std::string> AODELd::graph(const std::string& name) const

bayesnet/ensembles/AODELd.h

@@ -15,10 +15,10 @@ namespace bayesnet {
     public:
         AODELd(bool predict_voting = true);
         virtual ~AODELd() = default;
-        AODELd& fit(torch::Tensor& X_, torch::Tensor& y_, const std::vector<std::string>& features_, const std::string& className_, map<std::string, std::vector<int>>& states_) override;
+        AODELd& fit(torch::Tensor& X_, torch::Tensor& y_, const std::vector<std::string>& features_, const std::string& className_, map<std::string, std::vector<int>>& states_, const Smoothing_t smoothing) override;
         std::vector<std::string> graph(const std::string& name = "AODELd") const override;
     protected:
-        void trainModel(const torch::Tensor& weights) override;
+        void trainModel(const torch::Tensor& weights, const Smoothing_t smoothing) override;
         void buildModel(const torch::Tensor& weights) override;
     };
 }

bayesnet/ensembles/Boost.cc

@@ -0,0 +1,268 @@
+// ***************************************************************
+// SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez
+// SPDX-FileType: SOURCE
+// SPDX-License-Identifier: MIT
+// ***************************************************************
+#include "Boost.h"
+#include "bayesnet/feature_selection/CFS.h"
+#include "bayesnet/feature_selection/FCBF.h"
+#include "bayesnet/feature_selection/IWSS.h"
+#include <folding.hpp>
+
+namespace bayesnet {
+Boost::Boost(bool predict_voting) : Ensemble(predict_voting) {
+    validHyperparameters = {"alpha_block", "order",        "convergence",    "convergence_best", "bisection",
+                            "threshold",   "maxTolerance", "predict_voting", "select_features",  "block_update"};
+}
+void Boost::setHyperparameters(const nlohmann::json &hyperparameters_) {
+    auto hyperparameters = hyperparameters_;
+    if (hyperparameters.contains("order")) {
+        std::vector<std::string> algos = {Orders.ASC, Orders.DESC, Orders.RAND};
+        order_algorithm = hyperparameters["order"];
+        if (std::find(algos.begin(), algos.end(), order_algorithm) == algos.end()) {
+            throw std::invalid_argument("Invalid order algorithm, valid values [" + Orders.ASC + ", " + Orders.DESC +
+                                        ", " + Orders.RAND + "]");
+        }
+        hyperparameters.erase("order");
+    }
+    if (hyperparameters.contains("alpha_block")) {
+        alpha_block = hyperparameters["alpha_block"];
+        hyperparameters.erase("alpha_block");
+    }
+    if (hyperparameters.contains("convergence")) {
+        convergence = hyperparameters["convergence"];
+        hyperparameters.erase("convergence");
+    }
+    if (hyperparameters.contains("convergence_best")) {
+        convergence_best = hyperparameters["convergence_best"];
+        hyperparameters.erase("convergence_best");
+    }
+    if (hyperparameters.contains("bisection")) {
+        bisection = hyperparameters["bisection"];
+        hyperparameters.erase("bisection");
+    }
+    if (hyperparameters.contains("threshold")) {
+        threshold = hyperparameters["threshold"];
+        hyperparameters.erase("threshold");
+    }
+    if (hyperparameters.contains("maxTolerance")) {
+        maxTolerance = hyperparameters["maxTolerance"];
+        if (maxTolerance < 1 || maxTolerance > 6)
+            throw std::invalid_argument("Invalid maxTolerance value, must be greater in [1, 6]");
+        hyperparameters.erase("maxTolerance");
+    }
+    if (hyperparameters.contains("predict_voting")) {
+        predict_voting = hyperparameters["predict_voting"];
+        hyperparameters.erase("predict_voting");
+    }
+    if (hyperparameters.contains("select_features")) {
+        auto selectedAlgorithm = hyperparameters["select_features"];
+        std::vector<std::string> algos = {SelectFeatures.IWSS, SelectFeatures.CFS, SelectFeatures.FCBF};
+        selectFeatures = true;
+        select_features_algorithm = selectedAlgorithm;
+        if (std::find(algos.begin(), algos.end(), selectedAlgorithm) == algos.end()) {
+            throw std::invalid_argument("Invalid selectFeatures value, valid values [" + SelectFeatures.IWSS + ", " +
+                                        SelectFeatures.CFS + ", " + SelectFeatures.FCBF + "]");
+        }
+        hyperparameters.erase("select_features");
+    }
+    if (hyperparameters.contains("block_update")) {
+        block_update = hyperparameters["block_update"];
+        hyperparameters.erase("block_update");
+    }
+    if (block_update && alpha_block) {
+        throw std::invalid_argument("alpha_block and block_update cannot be true at the same time");
+    }
+    if (block_update && !bisection) {
+        throw std::invalid_argument("block_update needs bisection to be true");
+    }
+    Classifier::setHyperparameters(hyperparameters);
+}
+void Boost::add_model(std::unique_ptr<Classifier> model, double significance) {
+    models.push_back(std::move(model));
+    n_models++;
+    significanceModels.push_back(significance);
+}
+void Boost::remove_last_model() {
+    models.pop_back();
+    significanceModels.pop_back();
+    n_models--;
+}
+void Boost::buildModel(const torch::Tensor &weights) {
+    // Models shall be built in trainModel
+    models.clear();
+    significanceModels.clear();
+    n_models = 0;
+    // Prepare the validation dataset
+    auto y_ = dataset.index({-1, "..."});
+    if (convergence) {
+        // Prepare train & validation sets from train data
+        auto fold = folding::StratifiedKFold(5, y_, 271);
+        auto [train, test] = fold.getFold(0);
+        auto train_t = torch::tensor(train);
+        auto test_t = torch::tensor(test);
+        // Get train and validation sets
+        X_train = dataset.index({torch::indexing::Slice(0, dataset.size(0) - 1), train_t});
+        y_train = dataset.index({-1, train_t});
+        X_test = dataset.index({torch::indexing::Slice(0, dataset.size(0) - 1), test_t});
+        y_test = dataset.index({-1, test_t});
+        dataset = X_train;
+        m = X_train.size(1);
+        auto n_classes = states.at(className).size();
+        // Build dataset with train data
+        buildDataset(y_train);
+        metrics = Metrics(dataset, features, className, n_classes);
+    } else {
+        // Use all data to train
+        X_train = dataset.index({torch::indexing::Slice(0, dataset.size(0) - 1), "..."});
+        y_train = y_;
+    }
+}
+std::vector<int> Boost::featureSelection(torch::Tensor &weights_) {
+    int maxFeatures = 0;
+    if (select_features_algorithm == SelectFeatures.CFS) {
+        featureSelector = new CFS(dataset, features, className, maxFeatures, states.at(className).size(), weights_);
+    } else if (select_features_algorithm == SelectFeatures.IWSS) {
+        if (threshold < 0 || threshold > 0.5) {
+            throw std::invalid_argument("Invalid threshold value for " + SelectFeatures.IWSS + " [0, 0.5]");
+        }
+        featureSelector =
+            new IWSS(dataset, features, className, maxFeatures, states.at(className).size(), weights_, threshold);
+    } else if (select_features_algorithm == SelectFeatures.FCBF) {
+        if (threshold < 1e-7 || threshold > 1) {
+            throw std::invalid_argument("Invalid threshold value for " + SelectFeatures.FCBF + " [1e-7, 1]");
+        }
+        featureSelector =
+            new FCBF(dataset, features, className, maxFeatures, states.at(className).size(), weights_, threshold);
+    }
+    featureSelector->fit();
+    auto featuresUsed = featureSelector->getFeatures();
+    delete featureSelector;
+    return featuresUsed;
+}
+std::tuple<torch::Tensor &, double, bool> Boost::update_weights(torch::Tensor &ytrain, torch::Tensor &ypred,
+                                                                torch::Tensor &weights) {
+    bool terminate = false;
+    double alpha_t = 0;
+    auto mask_wrong = ypred != ytrain;
+    auto mask_right = ypred == ytrain;
+    auto masked_weights = weights * mask_wrong.to(weights.dtype());
+    double epsilon_t = masked_weights.sum().item<double>();
+    // std::cout << "epsilon_t: " << epsilon_t << " count wrong: " << mask_wrong.sum().item<int>() << " count right: "
+    // << mask_right.sum().item<int>() << std::endl;
+    if (epsilon_t > 0.5) {
+        // Inverse the weights policy (plot ln(wt))
+        // "In each round of AdaBoost, there is a sanity check to ensure that the current base
+        // learner is better than random guess" (Zhi-Hua Zhou, 2012)
+        terminate = true;
+    } else {
+        double wt = (1 - epsilon_t) / epsilon_t;
+        alpha_t = epsilon_t == 0 ? 1 : 0.5 * log(wt);
+        // Step 3.2: Update weights for next classifier
+        // Step 3.2.1: Update weights of wrong samples
+        weights += mask_wrong.to(weights.dtype()) * exp(alpha_t) * weights;
+        // Step 3.2.2: Update weights of right samples
+        weights += mask_right.to(weights.dtype()) * exp(-alpha_t) * weights;
+        // Step 3.3: Normalise the weights
+        double totalWeights = torch::sum(weights).item<double>();
+        weights = weights / totalWeights;
+    }
+    return {weights, alpha_t, terminate};
+}
+std::tuple<torch::Tensor &, double, bool> Boost::update_weights_block(int k, torch::Tensor &ytrain,
+                                                                      torch::Tensor &weights) {
+    /* Update Block algorithm
+        k = # of models in block
+        n_models = # of models in ensemble to make predictions
+        n_models_bak = # models saved
+        models = vector of models to make predictions
+        models_bak = models not used to make predictions
+        significances_bak = backup of significances vector
+
+        Case list
+        A) k = 1, n_models = 1		=> n = 0 , n_models = n + k
+        B) k = 1, n_models = n + 1	=> n_models = n + k
+        C) k > 1, n_models = k + 1 	=> n= 1, n_models = n + k
+        D) k > 1, n_models = k		=> n = 0, n_models = n + k
+        E) k > 1, n_models = k + n	=> n_models = n + k
+
+        A, D) n=0, k > 0, n_models == k
+        1. n_models_bak <- n_models
+        2. significances_bak <- significances
+        3. significances = vector(k, 1)
+        4. Don’t move any classifiers out of models
+        5. n_models <- k
+        6. Make prediction, compute alpha, update weights
+        7. Don’t restore any classifiers to models
+        8. significances <- significances_bak
+        9. Update last k significances
+        10. n_models <- n_models_bak
+
+        B, C, E) n > 0, k > 0, n_models == n + k
+        1. n_models_bak <- n_models
+        2. significances_bak <- significances
+        3. significances = vector(k, 1)
+        4. Move first n classifiers to models_bak
+        5. n_models <- k
+        6. Make prediction, compute alpha, update weights
+        7. Insert classifiers in models_bak to be the first n models
+        8. significances <- significances_bak
+        9. Update last k significances
+        10. n_models <- n_models_bak
+    */
+    //
+    // Make predict with only the last k models
+    //
+    std::unique_ptr<Classifier> model;
+    std::vector<std::unique_ptr<Classifier>> models_bak;
+    // 1. n_models_bak <- n_models 2. significances_bak <- significances
+    auto significance_bak = significanceModels;
+    auto n_models_bak = n_models;
+    // 3. significances = vector(k, 1)
+    significanceModels = std::vector<double>(k, 1.0);
+    // 4. Move first n classifiers to models_bak
+    // backup the first n_models - k models (if n_models == k, don't backup any)
+    for (int i = 0; i < n_models - k; ++i) {
+        model = std::move(models[0]);
+        models.erase(models.begin());
+        models_bak.push_back(std::move(model));
+    }
+    assert(models.size() == k);
+    // 5. n_models <- k
+    n_models = k;
+    // 6. Make prediction, compute alpha, update weights
+    auto ypred = predict(X_train);
+    //
+    // Update weights
+    //
+    double alpha_t;
+    bool terminate;
+    std::tie(weights, alpha_t, terminate) = update_weights(y_train, ypred, weights);
+    //
+    // Restore the models if needed
+    //
+    // 7. Insert classifiers in models_bak to be the first n models
+    // if n_models_bak == k, don't restore any, because none of them were moved
+    if (k != n_models_bak) {
+        // Insert in the same order as they were extracted
+        int bak_size = models_bak.size();
+        for (int i = 0; i < bak_size; ++i) {
+            model = std::move(models_bak[bak_size - 1 - i]);
+            models_bak.erase(models_bak.end() - 1);
+            models.insert(models.begin(), std::move(model));
+        }
+    }
+    // 8. significances <- significances_bak
+    significanceModels = significance_bak;
+    //
+    // Update the significance of the last k models
+    //
+    // 9. Update last k significances
+    for (int i = 0; i < k; ++i) {
+        significanceModels[n_models_bak - k + i] = alpha_t;
+    }
+    // 10. n_models <- n_models_bak
+    n_models = n_models_bak;
+    return {weights, alpha_t, terminate};
+}
+} // namespace bayesnet

bayesnet/ensembles/Boost.h

@@ -0,0 +1,57 @@
+// ***************************************************************
+// SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez
+// SPDX-FileType: SOURCE
+// SPDX-License-Identifier: MIT
+// ***************************************************************
+
+#ifndef BOOST_H
+#define BOOST_H
+#include <string>
+#include <tuple>
+#include <vector>
+#include <nlohmann/json.hpp>
+#include <torch/torch.h>
+#include "Ensemble.h"
+#include "bayesnet/feature_selection/FeatureSelect.h"
+namespace bayesnet {
+    const struct {
+        std::string CFS = "CFS";
+        std::string FCBF = "FCBF";
+        std::string IWSS = "IWSS";
+    }SelectFeatures;
+    const struct {
+        std::string ASC = "asc";
+        std::string DESC = "desc";
+        std::string RAND = "rand";
+    }Orders;
+    class Boost : public Ensemble {
+    public:
+        explicit Boost(bool predict_voting = false);
+        virtual ~Boost() override = default;
+        void setHyperparameters(const nlohmann::json& hyperparameters_) override;
+    protected:
+        std::vector<int> featureSelection(torch::Tensor& weights_);
+        void buildModel(const torch::Tensor& weights) override;
+        std::tuple<torch::Tensor&, double, bool> update_weights(torch::Tensor& ytrain, torch::Tensor& ypred, torch::Tensor& weights);
+        std::tuple<torch::Tensor&, double, bool> update_weights_block(int k, torch::Tensor& ytrain, torch::Tensor& weights);
+        void add_model(std::unique_ptr<Classifier> model, double significance);
+        void remove_last_model();
+        //
+        // Attributes
+        //
+        torch::Tensor X_train, y_train, X_test, y_test;
+        // Hyperparameters
+        bool bisection = true; // if true, use bisection stratety to add k models at once to the ensemble
+        int maxTolerance = 3;
+        std::string order_algorithm = Orders.DESC; // order to process the KBest features asc, desc, rand
+        bool convergence = true; //if true, stop when the model does not improve
+        bool convergence_best = false; // wether to keep the best accuracy to the moment or the last accuracy as prior accuracy
+        bool selectFeatures = false; // if true, use feature selection
+        std::string select_features_algorithm; // Selected feature selection algorithm
+        FeatureSelect* featureSelector = nullptr;
+        double threshold = -1;
+        bool block_update = false; // if true, use block update algorithm, only meaningful if bisection is true
+        bool alpha_block = false; // if true, the alpha is computed with the ensemble built so far and the new model
+    };
+}
+#endif

bayesnet/ensembles/BoostA2DE.cc

@@ -0,0 +1,165 @@
+// ***************************************************************
+// SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez
+// SPDX-FileType: SOURCE
+// SPDX-License-Identifier: MIT
+// ***************************************************************
+
+#include <limits.h>
+#include <tuple>
+#include <folding.hpp>
+#include "BoostA2DE.h"
+
+namespace bayesnet {
+
+    BoostA2DE::BoostA2DE(bool predict_voting) : Boost(predict_voting)
+    {
+    }
+    std::vector<int> BoostA2DE::initializeModels(const Smoothing_t smoothing)
+    {
+        torch::Tensor weights_ = torch::full({ m }, 1.0 / m, torch::kFloat64);
+        std::vector<int> featuresSelected = featureSelection(weights_);
+        if (featuresSelected.size() < 2) {
+            notes.push_back("No features selected in initialization");
+            status = ERROR;
+            return std::vector<int>();
+        }
+        for (int i = 0; i < featuresSelected.size() - 1; i++) {
+            for (int j = i + 1; j < featuresSelected.size(); j++) {
+                auto parents = { featuresSelected[i], featuresSelected[j] };
+                std::unique_ptr<Classifier> model = std::make_unique<SPnDE>(parents);
+                model->fit(dataset, features, className, states, weights_, smoothing);
+                models.push_back(std::move(model));
+                significanceModels.push_back(1.0); // They will be updated later in trainModel
+                n_models++;
+            }
+        }
+        notes.push_back("Used features in initialization: " + std::to_string(featuresSelected.size()) + " of " + std::to_string(features.size()) + " with " + select_features_algorithm);
+        return featuresSelected;
+    }
+    void BoostA2DE::trainModel(const torch::Tensor& weights, const Smoothing_t smoothing)
+    {
+        //
+        // Logging setup
+        //
+        // loguru::set_thread_name("BoostA2DE");
+        // loguru::g_stderr_verbosity = loguru::Verbosity_OFF;
+        // loguru::add_file("boostA2DE.log", loguru::Truncate, loguru::Verbosity_MAX);
+
+        // Algorithm based on the adaboost algorithm for classification
+        // as explained in Ensemble methods (Zhi-Hua Zhou, 2012)
+        fitted = true;
+        double alpha_t = 0;
+        torch::Tensor weights_ = torch::full({ m }, 1.0 / m, torch::kFloat64);
+        bool finished = false;
+        std::vector<int> featuresUsed;
+        if (selectFeatures) {
+            featuresUsed = initializeModels(smoothing);
+            if (featuresUsed.size() == 0) {
+                return;
+            }
+            auto ypred = predict(X_train);
+            std::tie(weights_, alpha_t, finished) = update_weights(y_train, ypred, weights_);
+            // Update significance of the models
+            for (int i = 0; i < n_models; ++i) {
+                significanceModels[i] = alpha_t;
+            }
+            if (finished) {
+                return;
+            }
+        }
+        int numItemsPack = 0; // The counter of the models inserted in the current pack
+        // Variables to control the accuracy finish condition
+        double priorAccuracy = 0.0;
+        double improvement = 1.0;
+        double convergence_threshold = 1e-4;
+        int tolerance = 0; // number of times the accuracy is lower than the convergence_threshold
+        // Step 0: Set the finish condition
+        // epsilon sub t > 0.5 => inverse the weights policy
+        // validation error is not decreasing
+        // run out of features
+        bool ascending = order_algorithm == Orders.ASC;
+        std::mt19937 g{ 173 };
+        std::vector<std::pair<int, int>> pairSelection;
+        while (!finished) {
+            // Step 1: Build ranking with mutual information
+            pairSelection = metrics.SelectKPairs(weights_, featuresUsed, ascending, 0); // Get all the pairs sorted
+            if (order_algorithm == Orders.RAND) {
+                std::shuffle(pairSelection.begin(), pairSelection.end(), g);
+            }
+            int k = bisection ? pow(2, tolerance) : 1;
+            int counter = 0; // The model counter of the current pack
+            // VLOG_SCOPE_F(1, "counter=%d k=%d featureSelection.size: %zu", counter, k, featureSelection.size());
+            while (counter++ < k && pairSelection.size() > 0) {
+                auto feature_pair = pairSelection[0];
+                pairSelection.erase(pairSelection.begin());
+                std::unique_ptr<Classifier> model;
+                model = std::make_unique<SPnDE>(std::vector<int>({ feature_pair.first, feature_pair.second }));
+                model->fit(dataset, features, className, states, weights_, smoothing);
+                alpha_t = 0.0;
+                if (!block_update) {
+                    auto ypred = model->predict(X_train);
+                    // Step 3.1: Compute the classifier amout of say
+                    std::tie(weights_, alpha_t, finished) = update_weights(y_train, ypred, weights_);
+                }
+                // Step 3.4: Store classifier and its accuracy to weigh its future vote
+                numItemsPack++;
+                models.push_back(std::move(model));
+                significanceModels.push_back(alpha_t);
+                n_models++;
+                // VLOG_SCOPE_F(2, "numItemsPack: %d n_models: %d featuresUsed: %zu", numItemsPack, n_models, featuresUsed.size());
+            }
+            if (block_update) {
+                std::tie(weights_, alpha_t, finished) = update_weights_block(k, y_train, weights_);
+            }
+            if (convergence && !finished) {
+                auto y_val_predict = predict(X_test);
+                double accuracy = (y_val_predict == y_test).sum().item<double>() / (double)y_test.size(0);
+                if (priorAccuracy == 0) {
+                    priorAccuracy = accuracy;
+                } else {
+                    improvement = accuracy - priorAccuracy;
+                }
+                if (improvement < convergence_threshold) {
+                    // VLOG_SCOPE_F(3, "  (improvement<threshold) tolerance: %d numItemsPack: %d improvement: %f prior: %f current: %f", tolerance, numItemsPack, improvement, priorAccuracy, accuracy);
+                    tolerance++;
+                } else {
+                    // VLOG_SCOPE_F(3, "* (improvement>=threshold) Reset. tolerance: %d numItemsPack: %d improvement: %f prior: %f current: %f", tolerance, numItemsPack, improvement, priorAccuracy, accuracy);
+                    tolerance = 0; // Reset the counter if the model performs better
+                    numItemsPack = 0;
+                }
+                if (convergence_best) {
+                    // Keep the best accuracy until now as the prior accuracy
+                    priorAccuracy = std::max(accuracy, priorAccuracy);
+                } else {
+                    // Keep the last accuray obtained as the prior accuracy
+                    priorAccuracy = accuracy;
+                }
+            }
+            // VLOG_SCOPE_F(1, "tolerance: %d featuresUsed.size: %zu features.size: %zu", tolerance, featuresUsed.size(), features.size());
+            finished = finished || tolerance > maxTolerance || pairSelection.size() == 0;
+        }
+        if (tolerance > maxTolerance) {
+            if (numItemsPack < n_models) {
+                notes.push_back("Convergence threshold reached & " + std::to_string(numItemsPack) + " models eliminated");
+                // VLOG_SCOPE_F(4, "Convergence threshold reached & %d models eliminated of %d", numItemsPack, n_models);
+                for (int i = 0; i < numItemsPack; ++i) {
+                    significanceModels.pop_back();
+                    models.pop_back();
+                    n_models--;
+                }
+            } else {
+                notes.push_back("Convergence threshold reached & 0 models eliminated");
+                // VLOG_SCOPE_F(4, "Convergence threshold reached & 0 models eliminated n_models=%d numItemsPack=%d", n_models, numItemsPack);
+            }
+        }
+        if (pairSelection.size() > 0) {
+            notes.push_back("Pairs not used in train: " + std::to_string(pairSelection.size()));
+            status = WARNING;
+        }
+        notes.push_back("Number of models: " + std::to_string(n_models));
+    }
+    std::vector<std::string> BoostA2DE::graph(const std::string& title) const
+    {
+        return Ensemble::graph(title);
+    }
+}

bayesnet/ensembles/BoostA2DE.h

@@ -0,0 +1,25 @@
+// ***************************************************************
+// SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez
+// SPDX-FileType: SOURCE
+// SPDX-License-Identifier: MIT
+// ***************************************************************
+
+#ifndef BOOSTA2DE_H
+#define BOOSTA2DE_H
+#include <string>
+#include <vector>
+#include "bayesnet/classifiers/SPnDE.h"
+#include "Boost.h"
+namespace bayesnet {
+    class BoostA2DE : public Boost {
+    public:
+        explicit BoostA2DE(bool predict_voting = false);
+        virtual ~BoostA2DE() = default;
+        std::vector<std::string> graph(const std::string& title = "BoostA2DE") const override;
+    protected:
+        void trainModel(const torch::Tensor& weights, const Smoothing_t smoothing) override;
+    private:
+        std::vector<int> initializeModels(const Smoothing_t smoothing);
+    };
+}
+#endif

bayesnet/ensembles/BoostAODE.cc

@@ -4,264 +4,43 @@
 // SPDX-License-Identifier: MIT
 // ***************************************************************
 
-#include <set>
-#include <functional>
-#include <limits.h>
-#include <tuple>
-#include <folding.hpp>
-#include "bayesnet/feature_selection/CFS.h"
-#include "bayesnet/feature_selection/FCBF.h"
-#include "bayesnet/feature_selection/IWSS.h"
 #include "BoostAODE.h"
+#include "bayesnet/classifiers/SPODE.h"
+#include <limits.h>
+// #include <loguru.cpp>
+// #include <loguru.hpp>
+#include <random>
+#include <set>
+#include <tuple>
 
 namespace bayesnet {
 
-    BoostAODE::BoostAODE(bool predict_voting) : Ensemble(predict_voting)
+    BoostAODE::BoostAODE(bool predict_voting) : Boost(predict_voting)
     {
-        validHyperparameters = {
-            "maxModels", "bisection", "order", "convergence", "threshold",
-            "select_features", "maxTolerance", "predict_voting", "block_update"
-        };
-
     }
-    void BoostAODE::buildModel(const torch::Tensor& weights)
+    std::vector<int> BoostAODE::initializeModels(const Smoothing_t smoothing)
     {
-        // Models shall be built in trainModel
-        models.clear();
-        significanceModels.clear();
-        n_models = 0;
-        // Prepare the validation dataset
-        auto y_ = dataset.index({ -1, "..." });
-        if (convergence) {
-            // Prepare train & validation sets from train data
-            auto fold = folding::StratifiedKFold(5, y_, 271);
-            auto [train, test] = fold.getFold(0);
-            auto train_t = torch::tensor(train);
-            auto test_t = torch::tensor(test);
-            // Get train and validation sets
-            X_train = dataset.index({ torch::indexing::Slice(0, dataset.size(0) - 1), train_t });
-            y_train = dataset.index({ -1, train_t });
-            X_test = dataset.index({ torch::indexing::Slice(0, dataset.size(0) - 1), test_t });
-            y_test = dataset.index({ -1, test_t });
-            dataset = X_train;
-            m = X_train.size(1);
-            auto n_classes = states.at(className).size();
-            // Build dataset with train data
-            buildDataset(y_train);
-            metrics = Metrics(dataset, features, className, n_classes);
-        } else {
-            // Use all data to train
-            X_train = dataset.index({ torch::indexing::Slice(0, dataset.size(0) - 1), "..." });
-            y_train = y_;
-        }
-    }
-    void BoostAODE::setHyperparameters(const nlohmann::json& hyperparameters_)
-    {
-        auto hyperparameters = hyperparameters_;
-        if (hyperparameters.contains("order")) {
-            std::vector<std::string> algos = { Orders.ASC, Orders.DESC, Orders.RAND };
-            order_algorithm = hyperparameters["order"];
-            if (std::find(algos.begin(), algos.end(), order_algorithm) == algos.end()) {
-                throw std::invalid_argument("Invalid order algorithm, valid values [" + Orders.ASC + ", " + Orders.DESC + ", " + Orders.RAND + "]");
-            }
-            hyperparameters.erase("order");
-        }
-        if (hyperparameters.contains("convergence")) {
-            convergence = hyperparameters["convergence"];
-            hyperparameters.erase("convergence");
-        }
-        if (hyperparameters.contains("bisection")) {
-            bisection = hyperparameters["bisection"];
-            hyperparameters.erase("bisection");
-        }
-        if (hyperparameters.contains("threshold")) {
-            threshold = hyperparameters["threshold"];
-            hyperparameters.erase("threshold");
-        }
-        if (hyperparameters.contains("maxTolerance")) {
-            maxTolerance = hyperparameters["maxTolerance"];
-            if (maxTolerance < 1 || maxTolerance > 4)
-                throw std::invalid_argument("Invalid maxTolerance value, must be greater in [1, 4]");
-            hyperparameters.erase("maxTolerance");
-        }
-        if (hyperparameters.contains("predict_voting")) {
-            predict_voting = hyperparameters["predict_voting"];
-            hyperparameters.erase("predict_voting");
-        }
-        if (hyperparameters.contains("select_features")) {
-            auto selectedAlgorithm = hyperparameters["select_features"];
-            std::vector<std::string> algos = { SelectFeatures.IWSS, SelectFeatures.CFS, SelectFeatures.FCBF };
-            selectFeatures = true;
-            select_features_algorithm = selectedAlgorithm;
-            if (std::find(algos.begin(), algos.end(), selectedAlgorithm) == algos.end()) {
-                throw std::invalid_argument("Invalid selectFeatures value, valid values [" + SelectFeatures.IWSS + ", " + SelectFeatures.CFS + ", " + SelectFeatures.FCBF + "]");
-            }
-            hyperparameters.erase("select_features");
-        }
-        if (hyperparameters.contains("block_update")) {
-            block_update = hyperparameters["block_update"];
-            hyperparameters.erase("block_update");
-        }
-        Classifier::setHyperparameters(hyperparameters);
-    }
-    std::tuple<torch::Tensor&, double, bool> update_weights(torch::Tensor& ytrain, torch::Tensor& ypred, torch::Tensor& weights)
-    {
-        bool terminate = false;
-        double alpha_t = 0;
-        auto mask_wrong = ypred != ytrain;
-        auto mask_right = ypred == ytrain;
-        auto masked_weights = weights * mask_wrong.to(weights.dtype());
-        double epsilon_t = masked_weights.sum().item<double>();
-        if (epsilon_t > 0.5) {
-            // Inverse the weights policy (plot ln(wt))
-            // "In each round of AdaBoost, there is a sanity check to ensure that the current base 
-            // learner is better than random guess" (Zhi-Hua Zhou, 2012)
-            terminate = true;
-        } else {
-            double wt = (1 - epsilon_t) / epsilon_t;
-            alpha_t = epsilon_t == 0 ? 1 : 0.5 * log(wt);
-            // Step 3.2: Update weights for next classifier
-            // Step 3.2.1: Update weights of wrong samples
-            weights += mask_wrong.to(weights.dtype()) * exp(alpha_t) * weights;
-            // Step 3.2.2: Update weights of right samples
-            weights += mask_right.to(weights.dtype()) * exp(-alpha_t) * weights;
-            // Step 3.3: Normalise the weights
-            double totalWeights = torch::sum(weights).item<double>();
-            weights = weights / totalWeights;
-        }
-        return { weights, alpha_t, terminate };
-    }
-    std::tuple<torch::Tensor&, double, bool> BoostAODE::update_weights_block(int k, torch::Tensor& ytrain, torch::Tensor& weights)
-    {
-        /* Update Block algorithm
-            k = # of models in block
-            n_models = # of models in ensemble to make predictions
-            n_models_bak = # models saved
-            models = vector of models to make predictions
-            models_bak = models not used to make predictions
-            significances_bak = backup of significances vector
-
-            Case list
-            A) k = 1, n_models = 1		=> n = 0 , n_models = n + k
-            B) k = 1, n_models = n + 1	=> n_models = n + k
-            C) k > 1, n_models = k + 1 	=> n= 1, n_models = n + k
-            D) k > 1, n_models = k		=> n = 0, n_models = n + k
-            E) k > 1, n_models = k + n	=> n_models = n + k
-
-            A, D) n=0, k > 0, n_models == k
-            1. n_models_bak <- n_models
-            2. significances_bak <- significances
-            3. significances = vector(k, 1)
-            4. Don’t move any classifiers out of models
-            5. n_models <- k
-            6. Make prediction, compute alpha, update weights
-            7. Don’t restore any classifiers to models
-            8. significances <- significances_bak
-            9. Update last k significances
-            10. n_models <- n_models_bak
-
-            B, C, E) n > 0, k > 0, n_models == n + k
-            1. n_models_bak <- n_models
-            2. significances_bak <- significances
-            3. significances = vector(k, 1)
-            4. Move first n classifiers to models_bak
-            5. n_models <- k
-            6. Make prediction, compute alpha, update weights
-            7. Insert classifiers in models_bak to be the first n models
-            8. significances <- significances_bak
-            9. Update last k significances
-            10. n_models <- n_models_bak
-        */
-        //
-        // Make predict with only the last k models
-        //
-        std::unique_ptr<Classifier> model;
-        std::vector<std::unique_ptr<Classifier>> models_bak;
-        // 1. n_models_bak <- n_models 2. significances_bak <- significances
-        auto significance_bak = significanceModels;
-        auto n_models_bak = n_models;
-        // 3. significances = vector(k, 1)
-        significanceModels = std::vector<double>(k, 1.0);
-        // 4. Move first n classifiers to models_bak
-        // backup the first n_models - k models (if n_models == k, don't backup any)
-        for (int i = 0; i < n_models - k; ++i) {
-            model = std::move(models[0]);
-            models.erase(models.begin());
-            models_bak.push_back(std::move(model));
-        }
-        assert(models.size() == k);
-        // 5. n_models <- k
-        n_models = k;
-        // 6. Make prediction, compute alpha, update weights
-        auto ypred = predict(X_train);
-        //
-        // Update weights
-        //
-        double alpha_t;
-        bool terminate;
-        std::tie(weights, alpha_t, terminate) = update_weights(y_train, ypred, weights);
-        //
-        // Restore the models if needed
-        //
-        // 7. Insert classifiers in models_bak to be the first n models
-        // if n_models_bak == k, don't restore any, because none of them were moved
-        if (k != n_models_bak) {
-            // Insert in the same order as they were extracted
-            int bak_size = models_bak.size();
-            for (int i = 0; i < bak_size; ++i) {
-                model = std::move(models_bak[bak_size - 1 - i]);
-                models_bak.erase(models_bak.end() - 1);
-                models.insert(models.begin(), std::move(model));
-            }
-        }
-        // 8. significances <- significances_bak
-        significanceModels = significance_bak;
-        //
-        // Update the significance of the last k models
-        //
-        // 9. Update last k significances
-        for (int i = 0; i < k; ++i) {
-            significanceModels[n_models_bak - k + i] = alpha_t;
-        }
-        // 10. n_models <- n_models_bak
-        n_models = n_models_bak;
-        return { weights, alpha_t, terminate };
-    }
-    std::vector<int> BoostAODE::initializeModels()
-    {
-        std::vector<int> featuresUsed;
         torch::Tensor weights_ = torch::full({ m }, 1.0 / m, torch::kFloat64);
-        int maxFeatures = 0;
-        if (select_features_algorithm == SelectFeatures.CFS) {
-            featureSelector = new CFS(dataset, features, className, maxFeatures, states.at(className).size(), weights_);
-        } else if (select_features_algorithm == SelectFeatures.IWSS) {
-            if (threshold < 0 || threshold >0.5) {
-                throw std::invalid_argument("Invalid threshold value for " + SelectFeatures.IWSS + " [0, 0.5]");
-            }
-            featureSelector = new IWSS(dataset, features, className, maxFeatures, states.at(className).size(), weights_, threshold);
-        } else if (select_features_algorithm == SelectFeatures.FCBF) {
-            if (threshold < 1e-7 || threshold > 1) {
-                throw std::invalid_argument("Invalid threshold value for " + SelectFeatures.FCBF + " [1e-7, 1]");
-            }
-            featureSelector = new FCBF(dataset, features, className, maxFeatures, states.at(className).size(), weights_, threshold);
-        }
-        featureSelector->fit();
-        auto cfsFeatures = featureSelector->getFeatures();
-        auto scores = featureSelector->getScores();
-        for (const int& feature : cfsFeatures) {
-            featuresUsed.push_back(feature);
+        std::vector<int> featuresSelected = featureSelection(weights_);
+        for (const int& feature : featuresSelected) {
             std::unique_ptr<Classifier> model = std::make_unique<SPODE>(feature);
-            model->fit(dataset, features, className, states, weights_);
+            model->fit(dataset, features, className, states, weights_, smoothing);
             models.push_back(std::move(model));
             significanceModels.push_back(1.0); // They will be updated later in trainModel
             n_models++;
         }
-        notes.push_back("Used features in initialization: " + std::to_string(featuresUsed.size()) + " of " + std::to_string(features.size()) + " with " + select_features_algorithm);
-        delete featureSelector;
-        return featuresUsed;
+        notes.push_back("Used features in initialization: " + std::to_string(featuresSelected.size()) + " of " + std::to_string(features.size()) + " with " + select_features_algorithm);
+        return featuresSelected;
     }
-    void BoostAODE::trainModel(const torch::Tensor& weights)
+    void BoostAODE::trainModel(const torch::Tensor& weights, const Smoothing_t smoothing)
     {
+        //
+        // Logging setup
+        //
+        // loguru::set_thread_name("BoostAODE");
+        // loguru::g_stderr_verbosity = loguru::Verbosity_OFF;
+        // loguru::add_file("boostAODE.log", loguru::Truncate, loguru::Verbosity_MAX);
+
         // Algorithm based on the adaboost algorithm for classification
         // as explained in Ensemble methods (Zhi-Hua Zhou, 2012)
         fitted = true;
@@ -269,14 +48,16 @@ namespace bayesnet {
         torch::Tensor weights_ = torch::full({ m }, 1.0 / m, torch::kFloat64);
         bool finished = false;
         std::vector<int> featuresUsed;
+        n_models = 0;
         if (selectFeatures) {
-            featuresUsed = initializeModels();
+            featuresUsed = initializeModels(smoothing);
             auto ypred = predict(X_train);
             std::tie(weights_, alpha_t, finished) = update_weights(y_train, ypred, weights_);
             // Update significance of the models
             for (int i = 0; i < n_models; ++i) {
-                significanceModels[i] = alpha_t;
+                significanceModels.push_back(alpha_t);
             }
+            // VLOG_SCOPE_F(1, "SelectFeatures. alpha_t: %f n_models: %d", alpha_t, n_models);
             if (finished) {
                 return;
             }
@@ -300,21 +81,38 @@ namespace bayesnet {
                 std::shuffle(featureSelection.begin(), featureSelection.end(), g);
             }
             // Remove used features
-            featureSelection.erase(remove_if(begin(featureSelection), end(featureSelection), [&](auto x)
-                { return std::find(begin(featuresUsed), end(featuresUsed), x) != end(featuresUsed);}),
-                end(featureSelection)
-            );
-            int k = pow(2, tolerance);
+            featureSelection.erase(remove_if(begin(featureSelection), end(featureSelection), [&](auto x) { return std::find(begin(featuresUsed), end(featuresUsed), x) != end(featuresUsed); }),
+                end(featureSelection));
+            int k = bisection ? pow(2, tolerance) : 1;
             int counter = 0; // The model counter of the current pack
+            // VLOG_SCOPE_F(1, "counter=%d k=%d featureSelection.size: %zu", counter, k, featureSelection.size());
             while (counter++ < k && featureSelection.size() > 0) {
                 auto feature = featureSelection[0];
                 featureSelection.erase(featureSelection.begin());
                 std::unique_ptr<Classifier> model;
                 model = std::make_unique<SPODE>(feature);
-                model->fit(dataset, features, className, states, weights_);
+                model->fit(dataset, features, className, states, weights_, smoothing);
                 alpha_t = 0.0;
                 if (!block_update) {
-                    auto ypred = model->predict(X_train);
+                    torch::Tensor ypred;
+                    if (alpha_block) {
+                        //
+                        // Compute the prediction with the current ensemble + model
+                        //
+                        // Add the model to the ensemble
+                        n_models++;
+                        models.push_back(std::move(model));
+                        significanceModels.push_back(1);
+                        // Compute the prediction
+                        ypred = predict(X_train);
+                        // Remove the model from the ensemble
+                        model = std::move(models.back());
+                        models.pop_back();
+                        significanceModels.pop_back();
+                        n_models--;
+                    } else {
+                        ypred = model->predict(X_train);
+                    }
                     // Step 3.1: Compute the classifier amout of say
                     std::tie(weights_, alpha_t, finished) = update_weights(y_train, ypred, weights_);
                 }
@@ -324,6 +122,7 @@ namespace bayesnet {
                 models.push_back(std::move(model));
                 significanceModels.push_back(alpha_t);
                 n_models++;
+                // VLOG_SCOPE_F(2, "finished: %d numItemsPack: %d n_models: %d featuresUsed: %zu", finished, numItemsPack, n_models, featuresUsed.size());
             }
             if (block_update) {
                 std::tie(weights_, alpha_t, finished) = update_weights_block(k, y_train, weights_);
@@ -337,20 +136,28 @@ namespace bayesnet {
                     improvement = accuracy - priorAccuracy;
                 }
                 if (improvement < convergence_threshold) {
+                    // VLOG_SCOPE_F(3, "  (improvement<threshold) tolerance: %d numItemsPack: %d improvement: %f prior: %f current: %f", tolerance, numItemsPack, improvement, priorAccuracy, accuracy);
                     tolerance++;
                 } else {
+                    // VLOG_SCOPE_F(3, "* (improvement>=threshold) Reset. tolerance: %d numItemsPack: %d improvement: %f prior: %f current: %f", tolerance, numItemsPack, improvement, priorAccuracy, accuracy);
                     tolerance = 0; // Reset the counter if the model performs better
                     numItemsPack = 0;
                 }
-                // Keep the best accuracy until now as the prior accuracy
-                priorAccuracy = std::max(accuracy, priorAccuracy);
-                // priorAccuracy = accuracy;
+                if (convergence_best) {
+                    // Keep the best accuracy until now as the prior accuracy
+                    priorAccuracy = std::max(accuracy, priorAccuracy);
+                } else {
+                    // Keep the last accuray obtained as the prior accuracy
+                    priorAccuracy = accuracy;
+                }
             }
+            // VLOG_SCOPE_F(1, "tolerance: %d featuresUsed.size: %zu features.size: %zu", tolerance, featuresUsed.size(), features.size());
             finished = finished || tolerance > maxTolerance || featuresUsed.size() == features.size();
         }
         if (tolerance > maxTolerance) {
             if (numItemsPack < n_models) {
                 notes.push_back("Convergence threshold reached & " + std::to_string(numItemsPack) + " models eliminated");
+                // VLOG_SCOPE_F(4, "Convergence threshold reached & %d models eliminated of %d", numItemsPack, n_models);
                 for (int i = 0; i < numItemsPack; ++i) {
                     significanceModels.pop_back();
                     models.pop_back();
@@ -358,6 +165,7 @@ namespace bayesnet {
                 }
             } else {
                 notes.push_back("Convergence threshold reached & 0 models eliminated");
+                // VLG_SCOPE_F(4, "Convergence threshold reached & 0 models eliminated n_models=%d numItemsPack=%d", n_models, numItemsPack);
             }
         }
         if (featuresUsed.size() != features.size()) {

bayesnet/ensembles/BoostAODE.h

@@ -6,44 +6,20 @@
 
 #ifndef BOOSTAODE_H
 #define BOOSTAODE_H
-#include <map>
-#include "bayesnet/classifiers/SPODE.h"
-#include "bayesnet/feature_selection/FeatureSelect.h"
-#include "Ensemble.h"
+#include <string>
+#include <vector>
+#include "Boost.h"
+
 namespace bayesnet {
-    struct {
-        std::string CFS = "CFS";
-        std::string FCBF = "FCBF";
-        std::string IWSS = "IWSS";
-    }SelectFeatures;
-    struct {
-        std::string ASC = "asc";
-        std::string DESC = "desc";
-        std::string RAND = "rand";
-    }Orders;
-    class BoostAODE : public Ensemble {
+    class BoostAODE : public Boost {
     public:
-        BoostAODE(bool predict_voting = false);
+        explicit BoostAODE(bool predict_voting = false);
         virtual ~BoostAODE() = default;
         std::vector<std::string> graph(const std::string& title = "BoostAODE") const override;
-        void setHyperparameters(const nlohmann::json& hyperparameters_) override;
     protected:
-        void buildModel(const torch::Tensor& weights) override;
-        void trainModel(const torch::Tensor& weights) override;
+        void trainModel(const torch::Tensor& weights, const Smoothing_t smoothing) override;
     private:
-        std::tuple<torch::Tensor&, double, bool> update_weights_block(int k, torch::Tensor& ytrain, torch::Tensor& weights);
-        std::vector<int> initializeModels();
-        torch::Tensor X_train, y_train, X_test, y_test;
-        // Hyperparameters
-        bool bisection = true; // if true, use bisection stratety to add k models at once to the ensemble
-        int maxTolerance = 3;
-        std::string order_algorithm; // order to process the KBest features asc, desc, rand
-        bool convergence = true; //if true, stop when the model does not improve
-        bool selectFeatures = false; // if true, use feature selection
-        std::string select_features_algorithm = Orders.DESC; // Selected feature selection algorithm
-        FeatureSelect* featureSelector = nullptr;
-        double threshold = -1;
-        bool block_update = false;
+        std::vector<int> initializeModels(const Smoothing_t smoothing);
     };
 }
 #endif

bayesnet/ensembles/Ensemble.cc

@@ -3,22 +3,20 @@
 // SPDX-FileType: SOURCE
 // SPDX-License-Identifier: MIT
 // ***************************************************************
-
 #include "Ensemble.h"
 
 namespace bayesnet {
 
     Ensemble::Ensemble(bool predict_voting) : Classifier(Network()), n_models(0), predict_voting(predict_voting)
     {
-
     };
     const std::string ENSEMBLE_NOT_FITTED = "Ensemble has not been fitted";
-    void Ensemble::trainModel(const torch::Tensor& weights)
+    void Ensemble::trainModel(const torch::Tensor& weights, const Smoothing_t smoothing)
     {
         n_models = models.size();
         for (auto i = 0; i < n_models; ++i) {
             // fit with std::vectors
-            models[i]->fit(dataset, features, className, states);
+            models[i]->fit(dataset, features, className, states, smoothing);
         }
     }
     std::vector<int> Ensemble::compute_arg_max(std::vector<std::vector<double>>& X)
@@ -85,17 +83,10 @@ namespace bayesnet {
     {
         auto n_states = models[0]->getClassNumStates();
         torch::Tensor y_pred = torch::zeros({ X.size(1), n_states }, torch::kFloat32);
-        auto threads{ std::vector<std::thread>() };
-        std::mutex mtx;
         for (auto i = 0; i < n_models; ++i) {
-            threads.push_back(std::thread([&, i]() {
-                auto ypredict = models[i]->predict_proba(X);
-                std::lock_guard<std::mutex> lock(mtx);
-                y_pred += ypredict * significanceModels[i];
-                }));
-        }
-        for (auto& thread : threads) {
-            thread.join();
+            auto ypredict = models[i]->predict_proba(X);
+            /*std::cout << "model " << i << " prediction: " << ypredict << " significance " << significanceModels[i] << std::endl;*/
+            y_pred += ypredict * significanceModels[i];
         }
         auto sum = std::reduce(significanceModels.begin(), significanceModels.end());
         y_pred /= sum;
@@ -105,23 +96,15 @@ namespace bayesnet {
     {
         auto n_states = models[0]->getClassNumStates();
         std::vector<std::vector<double>> y_pred(X[0].size(), std::vector<double>(n_states, 0.0));
-        auto threads{ std::vector<std::thread>() };
-        std::mutex mtx;
         for (auto i = 0; i < n_models; ++i) {
-            threads.push_back(std::thread([&, i]() {
-                auto ypredict = models[i]->predict_proba(X);
-                assert(ypredict.size() == y_pred.size());
-                assert(ypredict[0].size() == y_pred[0].size());
-                std::lock_guard<std::mutex> lock(mtx);
-                // Multiply each prediction by the significance of the model and then add it to the final prediction
-                for (auto j = 0; j < ypredict.size(); ++j) {
-                    std::transform(y_pred[j].begin(), y_pred[j].end(), ypredict[j].begin(), y_pred[j].begin(),
-                        [significanceModels = significanceModels[i]](double x, double y) { return x + y * significanceModels; });
-                }
-                }));
-        }
-        for (auto& thread : threads) {
-            thread.join();
+            auto ypredict = models[i]->predict_proba(X);
+            assert(ypredict.size() == y_pred.size());
+            assert(ypredict[0].size() == y_pred[0].size());
+            // Multiply each prediction by the significance of the model and then add it to the final prediction
+            for (auto j = 0; j < ypredict.size(); ++j) {
+                std::transform(y_pred[j].begin(), y_pred[j].end(), ypredict[j].begin(), y_pred[j].begin(),
+                    [significanceModels = significanceModels[i]](double x, double y) { return x + y * significanceModels; });
+            }
         }
         auto sum = std::reduce(significanceModels.begin(), significanceModels.end());
         //Divide each element of the prediction by the sum of the significances
@@ -141,17 +124,9 @@ namespace bayesnet {
     {
         // Build a m x n_models tensor with the predictions of each model
         torch::Tensor y_pred = torch::zeros({ X.size(1), n_models }, torch::kInt32);
-        auto threads{ std::vector<std::thread>() };
-        std::mutex mtx;
         for (auto i = 0; i < n_models; ++i) {
-            threads.push_back(std::thread([&, i]() {
-                auto ypredict = models[i]->predict(X);
-                std::lock_guard<std::mutex> lock(mtx);
-                y_pred.index_put_({ "...", i }, ypredict);
-                }));
-        }
-        for (auto& thread : threads) {
-            thread.join();
+            auto ypredict = models[i]->predict(X);
+            y_pred.index_put_({ "...", i }, ypredict);
         }
         return voting(y_pred);
     }

bayesnet/ensembles/Ensemble.h

@@ -33,9 +33,15 @@ namespace bayesnet {
         }
         std::string dump_cpt() const override
         {
-            return "";
+            std::string output;
+            for (auto& model : models) {
+                output += model->dump_cpt();
+                output += std::string(80, '-') + "\n";
+            }
+            return output;
         }
     protected:
+        void trainModel(const torch::Tensor& weights, const Smoothing_t smoothing) override;
         torch::Tensor predict_average_voting(torch::Tensor& X);
         std::vector<std::vector<double>> predict_average_voting(std::vector<std::vector<int>>& X);
         torch::Tensor predict_average_proba(torch::Tensor& X);
@@ -43,10 +49,10 @@ namespace bayesnet {
         torch::Tensor compute_arg_max(torch::Tensor& X);
         std::vector<int> compute_arg_max(std::vector<std::vector<double>>& X);
         torch::Tensor voting(torch::Tensor& votes);
+        // Attributes
         unsigned n_models;
         std::vector<std::unique_ptr<Classifier>> models;
         std::vector<double> significanceModels;
-        void trainModel(const torch::Tensor& weights) override;
         bool predict_voting;
     };
 }

bayesnet/ensembles/XBA2DE.cc

@@ -0,0 +1,168 @@
+// ***************************************************************
+// SPDX-FileCopyrightText: Copyright 2025 Ricardo Montañana Gómez
+// SPDX-FileType: SOURCE
+// SPDX-License-Identifier: MIT
+// ***************************************************************
+
+#include <folding.hpp>
+#include <limits.h>
+#include "XBA2DE.h"
+#include "bayesnet/classifiers/XSP2DE.h"
+#include "bayesnet/utils/TensorUtils.h"
+
+namespace bayesnet {
+
+XBA2DE::XBA2DE(bool predict_voting) : Boost(predict_voting) {}
+std::vector<int> XBA2DE::initializeModels(const Smoothing_t smoothing) {
+    torch::Tensor weights_ = torch::full({m}, 1.0 / m, torch::kFloat64);
+    std::vector<int> featuresSelected = featureSelection(weights_);
+    if (featuresSelected.size() < 2) {
+        notes.push_back("No features selected in initialization");
+        status = ERROR;
+        return std::vector<int>();
+    }
+    for (int i = 0; i < featuresSelected.size() - 1; i++) {
+        for (int j = i + 1; j < featuresSelected.size(); j++) {
+            std::unique_ptr<Classifier> model = std::make_unique<XSp2de>(featuresSelected[i], featuresSelected[j]);
+            model->fit(dataset, features, className, states, weights_, smoothing);
+            add_model(std::move(model), 1.0);
+        }
+    }
+    notes.push_back("Used features in initialization: " + std::to_string(featuresSelected.size()) + " of " +
+                    std::to_string(features.size()) + " with " + select_features_algorithm);
+    return featuresSelected;
+}
+void XBA2DE::trainModel(const torch::Tensor &weights, const Smoothing_t smoothing) {
+    //
+    // Logging setup
+    //
+    // loguru::set_thread_name("XBA2DE");
+    // loguru::g_stderr_verbosity = loguru::Verbosity_OFF;
+    // loguru::add_file("boostA2DE.log", loguru::Truncate, loguru::Verbosity_MAX);
+
+    // Algorithm based on the adaboost algorithm for classification
+    // as explained in Ensemble methods (Zhi-Hua Zhou, 2012)
+    X_train_ = TensorUtils::to_matrix(X_train);
+    y_train_ = TensorUtils::to_vector<int>(y_train);
+    if (convergence) {
+        X_test_ = TensorUtils::to_matrix(X_test);
+        y_test_ = TensorUtils::to_vector<int>(y_test);
+    }
+    fitted = true;
+    double alpha_t = 0;
+    torch::Tensor weights_ = torch::full({m}, 1.0 / m, torch::kFloat64);
+    bool finished = false;
+    std::vector<int> featuresUsed;
+    if (selectFeatures) {
+        featuresUsed = initializeModels(smoothing);
+        if (featuresUsed.size() == 0) {
+            return;
+        }
+        auto ypred = predict(X_train);
+        std::tie(weights_, alpha_t, finished) = update_weights(y_train, ypred, weights_);
+        // Update significance of the models
+        for (int i = 0; i < n_models; ++i) {
+            significanceModels[i] = alpha_t;
+        }
+        if (finished) {
+            return;
+        }
+    }
+    int numItemsPack = 0; // The counter of the models inserted in the current pack
+    // Variables to control the accuracy finish condition
+    double priorAccuracy = 0.0;
+    double improvement = 1.0;
+    double convergence_threshold = 1e-4;
+    int tolerance = 0; // number of times the accuracy is lower than the convergence_threshold
+    // Step 0: Set the finish condition
+    // epsilon sub t > 0.5 => inverse the weights policy
+    // validation error is not decreasing
+    // run out of features
+    bool ascending = order_algorithm == Orders.ASC;
+    std::mt19937 g{173};
+    std::vector<std::pair<int, int>> pairSelection;
+    while (!finished) {
+        // Step 1: Build ranking with mutual information
+        pairSelection = metrics.SelectKPairs(weights_, featuresUsed, ascending, 0); // Get all the pairs sorted
+        if (order_algorithm == Orders.RAND) {
+            std::shuffle(pairSelection.begin(), pairSelection.end(), g);
+        }
+        int k = bisection ? pow(2, tolerance) : 1;
+        int counter = 0; // The model counter of the current pack
+        // VLOG_SCOPE_F(1, "counter=%d k=%d featureSelection.size: %zu", counter, k, featureSelection.size());
+        while (counter++ < k && pairSelection.size() > 0) {
+            auto feature_pair = pairSelection[0];
+            pairSelection.erase(pairSelection.begin());
+            std::unique_ptr<Classifier> model;
+            model = std::make_unique<XSp2de>(feature_pair.first, feature_pair.second);
+            model->fit(dataset, features, className, states, weights_, smoothing);
+            alpha_t = 0.0;
+            if (!block_update) {
+                auto ypred = model->predict(X_train);
+                // Step 3.1: Compute the classifier amout of say
+                std::tie(weights_, alpha_t, finished) = update_weights(y_train, ypred, weights_);
+            }
+            // Step 3.4: Store classifier and its accuracy to weigh its future vote
+            numItemsPack++;
+            models.push_back(std::move(model));
+            significanceModels.push_back(alpha_t);
+            n_models++;
+            // VLOG_SCOPE_F(2, "numItemsPack: %d n_models: %d featuresUsed: %zu", numItemsPack, n_models,
+            // featuresUsed.size());
+        }
+        if (block_update) {
+            std::tie(weights_, alpha_t, finished) = update_weights_block(k, y_train, weights_);
+        }
+        if (convergence && !finished) {
+            auto y_val_predict = predict(X_test);
+            double accuracy = (y_val_predict == y_test).sum().item<double>() / (double)y_test.size(0);
+            if (priorAccuracy == 0) {
+                priorAccuracy = accuracy;
+            } else {
+                improvement = accuracy - priorAccuracy;
+            }
+            if (improvement < convergence_threshold) {
+                // VLOG_SCOPE_F(3, "  (improvement<threshold) tolerance: %d numItemsPack: %d improvement: %f prior: %f
+                // current: %f", tolerance, numItemsPack, improvement, priorAccuracy, accuracy);
+                tolerance++;
+            } else {
+                // VLOG_SCOPE_F(3, "* (improvement>=threshold) Reset. tolerance: %d numItemsPack: %d improvement: %f
+                // prior: %f current: %f", tolerance, numItemsPack, improvement, priorAccuracy, accuracy);
+                tolerance = 0; // Reset the counter if the model performs better
+                numItemsPack = 0;
+            }
+            if (convergence_best) {
+                // Keep the best accuracy until now as the prior accuracy
+                priorAccuracy = std::max(accuracy, priorAccuracy);
+            } else {
+                // Keep the last accuray obtained as the prior accuracy
+                priorAccuracy = accuracy;
+            }
+        }
+        // VLOG_SCOPE_F(1, "tolerance: %d featuresUsed.size: %zu features.size: %zu", tolerance, featuresUsed.size(),
+        // features.size());
+        finished = finished || tolerance > maxTolerance || pairSelection.size() == 0;
+    }
+    if (tolerance > maxTolerance) {
+        if (numItemsPack < n_models) {
+            notes.push_back("Convergence threshold reached & " + std::to_string(numItemsPack) + " models eliminated");
+            // VLOG_SCOPE_F(4, "Convergence threshold reached & %d models eliminated of %d", numItemsPack, n_models);
+            for (int i = 0; i < numItemsPack; ++i) {
+                significanceModels.pop_back();
+                models.pop_back();
+                n_models--;
+            }
+        } else {
+            notes.push_back("Convergence threshold reached & 0 models eliminated");
+            // VLOG_SCOPE_F(4, "Convergence threshold reached & 0 models eliminated n_models=%d numItemsPack=%d",
+            // n_models, numItemsPack);
+        }
+    }
+    if (pairSelection.size() > 0) {
+        notes.push_back("Pairs not used in train: " + std::to_string(pairSelection.size()));
+        status = WARNING;
+    }
+    notes.push_back("Number of models: " + std::to_string(n_models));
+}
+std::vector<std::string> XBA2DE::graph(const std::string &title) const { return Ensemble::graph(title); }
+} // namespace bayesnet

bayesnet/ensembles/XBA2DE.h

@@ -0,0 +1,28 @@
+// ***************************************************************
+// SPDX-FileCopyrightText: Copyright 2025 Ricardo Montañana Gómez
+// SPDX-FileType: SOURCE
+// SPDX-License-Identifier: MIT
+// ***************************************************************
+
+#ifndef XBA2DE_H
+#define XBA2DE_H
+#include <string>
+#include <vector>
+#include "Boost.h"
+namespace bayesnet {
+    class XBA2DE : public Boost {
+    public:
+        explicit XBA2DE(bool predict_voting = false);
+        virtual ~XBA2DE() = default;
+        std::vector<std::string> graph(const std::string& title = "XBA2DE") const override;
+        std::string getVersion() override { return version; };
+    protected:
+        void trainModel(const torch::Tensor& weights, const Smoothing_t smoothing) override;
+    private:
+        std::vector<int> initializeModels(const Smoothing_t smoothing);
+        std::vector<std::vector<int>> X_train_, X_test_;
+        std::vector<int> y_train_, y_test_;
+        std::string version = "0.9.7";
+    };
+}
+#endif

bayesnet/ensembles/XBAODE.cc

@@ -0,0 +1,184 @@
+// ***************************************************************
+// SPDX-FileCopyrightText: Copyright 2025 Ricardo Montañana Gómez
+// SPDX-FileType: SOURCE
+// SPDX-License-Identifier: MIT
+// ***************************************************************
+#include "XBAODE.h"
+#include "bayesnet/classifiers/XSPODE.h"
+#include "bayesnet/utils/TensorUtils.h"
+#include <limits.h>
+#include <random>
+#include <tuple>
+
+namespace bayesnet
+{
+    XBAODE::XBAODE() : Boost(false) {}
+    std::vector<int> XBAODE::initializeModels(const Smoothing_t smoothing)
+    {
+        torch::Tensor weights_ = torch::full({m}, 1.0 / m, torch::kFloat64);
+        std::vector<int> featuresSelected = featureSelection(weights_);
+        for (const int &feature : featuresSelected) {
+            std::unique_ptr<Classifier> model = std::make_unique<XSpode>(feature);
+            model->fit(dataset, features, className, states, weights_, smoothing);
+            add_model(std::move(model), 1.0);
+        }
+        notes.push_back("Used features in initialization: " + std::to_string(featuresSelected.size()) + " of " +
+                        std::to_string(features.size()) + " with " + select_features_algorithm);
+        return featuresSelected;
+    }
+    void XBAODE::trainModel(const torch::Tensor &weights, const bayesnet::Smoothing_t smoothing)
+    {
+        X_train_ = TensorUtils::to_matrix(X_train);
+        y_train_ = TensorUtils::to_vector<int>(y_train);
+        if (convergence) {
+            X_test_ = TensorUtils::to_matrix(X_test);
+            y_test_ = TensorUtils::to_vector<int>(y_test);
+        }
+        fitted = true;
+        double alpha_t;
+        torch::Tensor weights_ = torch::full({m}, 1.0 / m, torch::kFloat64);
+        bool finished = false;
+        std::vector<int> featuresUsed;
+        n_models = 0;
+        if (selectFeatures) {
+            featuresUsed = initializeModels(smoothing);
+            auto ypred = predict(X_train_);
+            auto ypred_t = torch::tensor(ypred);
+            std::tie(weights_, alpha_t, finished) = update_weights(y_train, ypred_t, weights_);
+            // Update significance of the models
+            for (const int &feature : featuresUsed) {
+                significanceModels.pop_back();
+            }
+            for (const int &feature : featuresUsed) {
+                significanceModels.push_back(alpha_t);
+            }
+            // VLOG_SCOPE_F(1, "SelectFeatures. alpha_t: %f n_models: %d", alpha_t,
+            // n_models);
+            if (finished) {
+                return;
+            }
+        }
+        int numItemsPack = 0; // The counter of the models inserted in the current pack
+        // Variables to control the accuracy finish condition
+        double priorAccuracy = 0.0;
+        double improvement = 1.0;
+        double convergence_threshold = 1e-4;
+        int tolerance = 0; // number of times the accuracy is lower than the convergence_threshold
+        // Step 0: Set the finish condition
+        // epsilon sub t > 0.5 => inverse the weights_ policy
+        // validation error is not decreasing
+        // run out of features
+        bool ascending = order_algorithm == bayesnet::Orders.ASC;
+        std::mt19937 g{173};
+        while (!finished) {
+            // Step 1: Build ranking with mutual information
+            auto featureSelection = metrics.SelectKBestWeighted(weights_, ascending, n); // Get all the features sorted
+            if (order_algorithm == bayesnet::Orders.RAND) {
+                std::shuffle(featureSelection.begin(), featureSelection.end(), g);
+            }
+            // Remove used features
+            featureSelection.erase(remove_if(featureSelection.begin(), featureSelection.end(),
+                                             [&](auto x) {
+                                                 return std::find(featuresUsed.begin(), featuresUsed.end(), x) !=
+                                                        featuresUsed.end();
+                                             }),
+                                   featureSelection.end());
+            int k = bisection ? pow(2, tolerance) : 1;
+            int counter = 0; // The model counter of the current pack
+            // VLOG_SCOPE_F(1, "counter=%d k=%d featureSelection.size: %zu", counter, k,
+            // featureSelection.size());
+            while (counter++ < k && featureSelection.size() > 0) {
+                auto feature = featureSelection[0];
+                featureSelection.erase(featureSelection.begin());
+                std::unique_ptr<Classifier> model;
+                model = std::make_unique<XSpode>(feature);
+                model->fit(dataset, features, className, states, weights_, smoothing);
+                /*dynamic_cast<XSpode*>(model.get())->fitx(X_train, y_train, weights_,
+                 * smoothing); // using exclusive XSpode fit method*/
+                // DEBUG
+                /*std::cout << dynamic_cast<XSpode*>(model.get())->to_string() <<
+                 * std::endl;*/
+                // DEBUG
+                std::vector<int> ypred;
+                if (alpha_block) {
+                    //
+                    // Compute the prediction with the current ensemble + model
+                    //
+                    // Add the model to the ensemble
+                    add_model(std::move(model), 1.0);
+                    // Compute the prediction
+                    ypred = predict(X_train_);
+                    model = std::move(models.back());
+                    // Remove the model from the ensemble
+                    remove_last_model();
+                } else {
+                    ypred = model->predict(X_train_);
+                }
+                // Step 3.1: Compute the classifier amout of say
+                auto ypred_t = torch::tensor(ypred);
+                std::tie(weights_, alpha_t, finished) = update_weights(y_train, ypred_t, weights_);
+                // Step 3.4: Store classifier and its accuracy to weigh its future vote
+                numItemsPack++;
+                featuresUsed.push_back(feature);
+                add_model(std::move(model), alpha_t);
+                // VLOG_SCOPE_F(2, "finished: %d numItemsPack: %d n_models: %d
+                // featuresUsed: %zu", finished, numItemsPack, n_models,
+                // featuresUsed.size());
+            } // End of the pack
+            if (convergence && !finished) {
+                auto y_val_predict = predict(X_test);
+                double accuracy = (y_val_predict == y_test).sum().item<double>() / (double)y_test.size(0);
+                if (priorAccuracy == 0) {
+                    priorAccuracy = accuracy;
+                } else {
+                    improvement = accuracy - priorAccuracy;
+                }
+                if (improvement < convergence_threshold) {
+                    // VLOG_SCOPE_F(3, "  (improvement<threshold) tolerance: %d
+                    // numItemsPack: %d improvement: %f prior: %f current: %f", tolerance,
+                    // numItemsPack, improvement, priorAccuracy, accuracy);
+                    tolerance++;
+                } else {
+                    // VLOG_SCOPE_F(3, "* (improvement>=threshold) Reset. tolerance: %d
+                    // numItemsPack: %d improvement: %f prior: %f current: %f", tolerance,
+                    // numItemsPack, improvement, priorAccuracy, accuracy);
+                    tolerance = 0; // Reset the counter if the model performs better
+                    numItemsPack = 0;
+                }
+                if (convergence_best) {
+                    // Keep the best accuracy until now as the prior accuracy
+                    priorAccuracy = std::max(accuracy, priorAccuracy);
+                } else {
+                    // Keep the last accuray obtained as the prior accuracy
+                    priorAccuracy = accuracy;
+                }
+            }
+            // VLOG_SCOPE_F(1, "tolerance: %d featuresUsed.size: %zu features.size:
+            // %zu", tolerance, featuresUsed.size(), features.size());
+            finished = finished || tolerance > maxTolerance || featuresUsed.size() == features.size();
+        }
+        if (tolerance > maxTolerance) {
+            if (numItemsPack < n_models) {
+                notes.push_back("Convergence threshold reached & " + std::to_string(numItemsPack) + " models eliminated");
+                // VLOG_SCOPE_F(4, "Convergence threshold reached & %d models eliminated
+                // of %d", numItemsPack, n_models);
+                for (int i = featuresUsed.size() - 1; i >= featuresUsed.size() - numItemsPack; --i) {
+                    remove_last_model();
+                }
+                // VLOG_SCOPE_F(4, "*Convergence threshold %d models left & %d features
+                // used.", n_models, featuresUsed.size());
+            } else {
+                notes.push_back("Convergence threshold reached & 0 models eliminated");
+                // VLOG_SCOPE_F(4, "Convergence threshold reached & 0 models eliminated
+                // n_models=%d numItemsPack=%d", n_models, numItemsPack);
+            }
+        }
+        if (featuresUsed.size() != features.size()) {
+            notes.push_back("Used features in train: " + std::to_string(featuresUsed.size()) + " of " +
+                            std::to_string(features.size()));
+            status = bayesnet::WARNING;
+        }
+        notes.push_back("Number of models: " + std::to_string(n_models));
+        return;
+    }
+} // namespace bayesnet

bayesnet/ensembles/XBAODE.h

@@ -0,0 +1,27 @@
+// ***************************************************************
+// SPDX-FileCopyrightText: Copyright 2025 Ricardo Montañana Gómez
+// SPDX-FileType: SOURCE
+// SPDX-License-Identifier: MIT
+// ***************************************************************
+
+#ifndef XBAODE_H
+#define XBAODE_H
+#include <vector>
+#include <cmath>
+#include "Boost.h"
+
+namespace bayesnet {
+    class XBAODE : public Boost {
+    public:
+        XBAODE();
+        std::string getVersion() override { return version; };
+    protected:
+        void trainModel(const torch::Tensor& weights, const bayesnet::Smoothing_t smoothing) override;
+    private:
+        std::vector<int> initializeModels(const Smoothing_t smoothing);
+        std::vector<std::vector<int>> X_train_, X_test_;
+        std::vector<int> y_train_, y_test_;
+        std::string version = "0.9.7";
+    };
+}
+#endif // XBAODE_H

bayesnet/feature_selection/FeatureSelect.cc

@@ -1,84 +1,141 @@
-// ***************************************************************
+// **
 // SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez
 // SPDX-FileType: SOURCE
 // SPDX-License-Identifier: MIT
-// ***************************************************************
+// **
 
-#include <limits>
 #include "bayesnet/utils/bayesnetUtils.h"
 #include "FeatureSelect.h"
-namespace bayesnet {
-    FeatureSelect::FeatureSelect(const torch::Tensor& samples, const std::vector<std::string>& features, const std::string& className, const int maxFeatures, const int classNumStates, const torch::Tensor& weights) :
-        Metrics(samples, features, className, classNumStates), maxFeatures(maxFeatures == 0 ? samples.size(0) - 1 : maxFeatures), weights(weights)
 
+namespace bayesnet {
+
+    using namespace torch::indexing;          // for Ellipsis constant
+
+    //---------------------------------------------------------------------
+    // ctor
+    //---------------------------------------------------------------------
+    FeatureSelect::FeatureSelect(const torch::Tensor& samples,
+        const std::vector<std::string>& features,
+        const std::string& className,
+        int maxFeatures,
+        int classNumStates,
+        const torch::Tensor& weights)
+        : Metrics(samples, features, className, classNumStates),
+        maxFeatures(maxFeatures == 0 ? samples.size(0) - 1 : maxFeatures),
+        weights(weights)
     {
     }
+
+    //---------------------------------------------------------------------
+    // public helpers
+    //---------------------------------------------------------------------
     void FeatureSelect::initialize()
     {
         selectedFeatures.clear();
         selectedScores.clear();
+        suLabels.clear();
+        suFeatures.clear();
+
+        fitted = false;
     }
+
+    //---------------------------------------------------------------------
+    // Symmetrical Uncertainty (SU)
+    //---------------------------------------------------------------------
     double FeatureSelect::symmetricalUncertainty(int a, int b)
     {
         /*
-        Compute symmetrical uncertainty. Normalize* information gain (mutual
-        information) with the entropies of the features in order to compensate
-        the bias due to high cardinality features. *Range [0, 1]
-        (https://www.sciencedirect.com/science/article/pii/S0020025519303603)
-        */
-        auto x = samples.index({ a, "..." });
-        auto y = samples.index({ b, "..." });
-        auto mu = mutualInformation(x, y, weights);
-        auto hx = entropy(x, weights);
-        auto hy = entropy(y, weights);
-        return 2.0 * mu / (hx + hy);
+         * Compute symmetrical uncertainty. Normalises the information gain
+         * (mutual information) with the entropies of the variables to compensate
+         * the bias due to high‑cardinality features. Range: [0, 1]
+         * See: https://www.sciencedirect.com/science/article/pii/S0020025519303603
+         */
+
+        auto x = samples.index({ a, Ellipsis });             // row a => feature a
+        auto y = (b >= 0) ? samples.index({ b, Ellipsis })    // row b (>=0) => feature b
+            : samples.index({ -1, Ellipsis }); // ‑1 treated as last row = labels
+
+        double mu = mutualInformation(x, y, weights);
+        double hx = entropy(x, weights);
+        double hy = entropy(y, weights);
+
+        const double denom = hx + hy;
+        if (denom == 0.0) return 0.0;   // perfectly pure variables
+
+        return 2.0 * mu / denom;
     }
+
+    //---------------------------------------------------------------------
+    // SU feature–class
+    //---------------------------------------------------------------------
     void FeatureSelect::computeSuLabels()
     {
-        // Compute Simmetrical Uncertainty between features and labels
+        // Compute Symmetrical Uncertainty between each feature and the class labels
         // https://en.wikipedia.org/wiki/Symmetric_uncertainty
-        for (int i = 0; i < features.size(); ++i) {
-            suLabels.push_back(symmetricalUncertainty(i, -1));
+        const int classIdx = static_cast<int>(samples.size(0)) - 1; // labels in last row
+        suLabels.reserve(features.size());
+        for (int i = 0; i < static_cast<int>(features.size()); ++i) {
+            suLabels.emplace_back(symmetricalUncertainty(i, classIdx));
         }
     }
-    double FeatureSelect::computeSuFeatures(const int firstFeature, const int secondFeature)
+
+    //---------------------------------------------------------------------
+    // SU feature–feature with cache
+    //---------------------------------------------------------------------
+    double FeatureSelect::computeSuFeatures(int firstFeature, int secondFeature)
     {
-        // Compute Simmetrical Uncertainty between features
-        // https://en.wikipedia.org/wiki/Symmetric_uncertainty
-        try {
-            return suFeatures.at({ firstFeature, secondFeature });
-        }
-        catch (const std::out_of_range& e) {
-            double result = symmetricalUncertainty(firstFeature, secondFeature);
-            suFeatures[{firstFeature, secondFeature}] = result;
-            return result;
-        }
+        // Order the pair to exploit symmetry => only one entry in the map
+        auto ordered = std::minmax(firstFeature, secondFeature);
+        const std::pair<int, int> key{ ordered.first, ordered.second };
+
+        auto it = suFeatures.find(key);
+        if (it != suFeatures.end()) return it->second;
+
+        double result = symmetricalUncertainty(key.first, key.second);
+        suFeatures[key] = result;  // store once (symmetry handled by ordering)
+        return result;
     }
+
+    //---------------------------------------------------------------------
+    // Correlation‑based Feature Selection (CFS) merit
+    //---------------------------------------------------------------------
     double FeatureSelect::computeMeritCFS()
     {
-        double rcf = 0;
-        for (auto feature : selectedFeatures) {
-            rcf += suLabels[feature];
-        }
-        double rff = 0;
-        int n = selectedFeatures.size();
-        for (const auto& item : doCombinations(selectedFeatures)) {
-            rff += computeSuFeatures(item.first, item.second);
-        }
-        return rcf / sqrt(n + (n * n - n) * rff);
+        const int n = static_cast<int>(selectedFeatures.size());
+        if (n == 0) return 0.0;
+
+        // average r_cf (feature–class)
+        double rcf_sum = 0.0;
+        for (int f : selectedFeatures) rcf_sum += suLabels[f];
+        const double rcf_avg = rcf_sum / n;
+
+        // average r_ff (feature–feature)
+        double rff_sum = 0.0;
+        const auto& pairs = doCombinations(selectedFeatures); // generates each unordered pair once
+        for (const auto& p : pairs) rff_sum += computeSuFeatures(p.first, p.second);
+
+        const double numPairs = n * (n - 1) * 0.5;
+        const double rff_avg = (numPairs > 0) ? rff_sum / numPairs : 0.0;
+
+        // Merit_S = k * r_cf / sqrt( k + k*(k‑1) * r_ff )      (Hall, 1999)
+        const double k = static_cast<double>(n);
+        return (k * rcf_avg) / std::sqrt(k + k * (k - 1) * rff_avg);
     }
+
+    //---------------------------------------------------------------------
+    // getters
+    //---------------------------------------------------------------------
     std::vector<int> FeatureSelect::getFeatures() const
     {
-        if (!fitted) {
-            throw std::runtime_error("FeatureSelect not fitted");
-        }
+        if (!fitted) throw std::runtime_error("FeatureSelect not fitted");
         return selectedFeatures;
     }
+
     std::vector<double> FeatureSelect::getScores() const
     {
-        if (!fitted) {
-            throw std::runtime_error("FeatureSelect not fitted");
-        }
+        if (!fitted) throw std::runtime_error("FeatureSelect not fitted");
         return selectedScores;
     }
-}
+
+} // namespace bayesnet
+ 

bayesnet/network/Network.cc

@@ -5,20 +5,20 @@
 // ***************************************************************
 
 #include <thread>
-#include <mutex>
 #include <sstream>
+#include <numeric>
+#include <algorithm>
 #include "Network.h"
 #include "bayesnet/utils/bayesnetUtils.h"
+#include "bayesnet/utils/CountingSemaphore.h"
+#include <pthread.h>
+#include <fstream>
 namespace bayesnet {
-    Network::Network() : fitted{ false }, maxThreads{ 0.95 }, classNumStates{ 0 }, laplaceSmoothing{ 0 }
+    Network::Network() : fitted{ false }, classNumStates{ 0 }
     {
     }
-    Network::Network(float maxT) : fitted{ false }, maxThreads{ maxT }, classNumStates{ 0 }, laplaceSmoothing{ 0 }
-    {
-
-    }
-    Network::Network(const Network& other) : laplaceSmoothing(other.laplaceSmoothing), features(other.features), className(other.className), classNumStates(other.getClassNumStates()),
-        maxThreads(other.getMaxThreads()), fitted(other.fitted), samples(other.samples)
+    Network::Network(const Network& other) : features(other.features), className(other.className), classNumStates(other.getClassNumStates()),
+        fitted(other.fitted), samples(other.samples)
     {
         if (samples.defined())
             samples = samples.clone();
@@ -35,16 +35,15 @@ namespace bayesnet {
         nodes.clear();
         samples = torch::Tensor();
     }
-    float Network::getMaxThreads() const
-    {
-        return maxThreads;
-    }
     torch::Tensor& Network::getSamples()
     {
         return samples;
     }
     void Network::addNode(const std::string& name)
     {
+        if (fitted) {
+            throw std::invalid_argument("Cannot add node to a fitted network. Initialize first.");
+        }
         if (name == "") {
             throw std::invalid_argument("Node name cannot be empty");
         }
@@ -94,12 +93,21 @@ namespace bayesnet {
     }
     void Network::addEdge(const std::string& parent, const std::string& child)
     {
+        if (fitted) {
+            throw std::invalid_argument("Cannot add edge to a fitted network. Initialize first.");
+        }
         if (nodes.find(parent) == nodes.end()) {
             throw std::invalid_argument("Parent node " + parent + " does not exist");
         }
         if (nodes.find(child) == nodes.end()) {
             throw std::invalid_argument("Child node " + child + " does not exist");
         }
+        // Check if the edge is already in the graph
+        for (auto& node : nodes[parent]->getChildren()) {
+            if (node->getName() == child) {
+                throw std::invalid_argument("Edge " + parent + " -> " + child + " already exists");
+            }
+        }
         // Temporarily add edge to check for cycles
         nodes[parent]->addChild(nodes[child].get());
         nodes[child]->addParent(nodes[parent].get());
@@ -155,7 +163,7 @@ namespace bayesnet {
         classNumStates = nodes.at(className)->getNumStates();
     }
     // X comes in nxm, where n is the number of features and m the number of samples
-    void Network::fit(const torch::Tensor& X, const torch::Tensor& y, const torch::Tensor& weights, const std::vector<std::string>& featureNames, const std::string& className, const std::map<std::string, std::vector<int>>& states)
+    void Network::fit(const torch::Tensor& X, const torch::Tensor& y, const torch::Tensor& weights, const std::vector<std::string>& featureNames, const std::string& className, const std::map<std::string, std::vector<int>>& states, const Smoothing_t smoothing)
     {
         checkFitData(X.size(1), X.size(0), y.size(0), featureNames, className, states, weights);
         this->className = className;
@@ -164,17 +172,17 @@ namespace bayesnet {
         for (int i = 0; i < featureNames.size(); ++i) {
             auto row_feature = X.index({ i, "..." });
         }
-        completeFit(states, weights);
+        completeFit(states, weights, smoothing);
     }
-    void Network::fit(const torch::Tensor& samples, const torch::Tensor& weights, const std::vector<std::string>& featureNames, const std::string& className, const std::map<std::string, std::vector<int>>& states)
+    void Network::fit(const torch::Tensor& samples, const torch::Tensor& weights, const std::vector<std::string>& featureNames, const std::string& className, const std::map<std::string, std::vector<int>>& states, const Smoothing_t smoothing)
     {
         checkFitData(samples.size(1), samples.size(0) - 1, samples.size(1), featureNames, className, states, weights);
         this->className = className;
         this->samples = samples;
-        completeFit(states, weights);
+        completeFit(states, weights, smoothing);
     }
     // input_data comes in nxm, where n is the number of features and m the number of samples
-    void Network::fit(const std::vector<std::vector<int>>& input_data, const std::vector<int>& labels, const std::vector<double>& weights_, const std::vector<std::string>& featureNames, const std::string& className, const std::map<std::string, std::vector<int>>& states)
+    void Network::fit(const std::vector<std::vector<int>>& input_data, const std::vector<int>& labels, const std::vector<double>& weights_, const std::vector<std::string>& featureNames, const std::string& className, const std::map<std::string, std::vector<int>>& states, const Smoothing_t smoothing)
     {
         const torch::Tensor weights = torch::tensor(weights_, torch::kFloat64);
         checkFitData(input_data[0].size(), input_data.size(), labels.size(), featureNames, className, states, weights);
@@ -185,17 +193,43 @@ namespace bayesnet {
             samples.index_put_({ i, "..." }, torch::tensor(input_data[i], torch::kInt32));
         }
         samples.index_put_({ -1, "..." }, torch::tensor(labels, torch::kInt32));
-        completeFit(states, weights);
+        completeFit(states, weights, smoothing);
     }
-    void Network::completeFit(const std::map<std::string, std::vector<int>>& states, const torch::Tensor& weights)
+    void Network::completeFit(const std::map<std::string, std::vector<int>>& states, const torch::Tensor& weights, const Smoothing_t smoothing)
     {
         setStates(states);
-        laplaceSmoothing = 1.0 / samples.size(1); // To use in CPT computation
         std::vector<std::thread> threads;
+        auto& semaphore = CountingSemaphore::getInstance();
+        const double n_samples = static_cast<double>(samples.size(1));
+        auto worker = [&](std::pair<const std::string, std::unique_ptr<Node>>& node, int i) {
+            std::string threadName = "FitWorker-" + std::to_string(i);
+#if defined(__linux__)
+            pthread_setname_np(pthread_self(), threadName.c_str());
+#else
+            pthread_setname_np(threadName.c_str());
+#endif
+            double numStates = static_cast<double>(node.second->getNumStates());
+            double smoothing_factor;
+            switch (smoothing) {
+                case Smoothing_t::ORIGINAL:
+                    smoothing_factor = 1.0 / n_samples;
+                    break;
+                case Smoothing_t::LAPLACE:
+                    smoothing_factor = 1.0;
+                    break;
+                case Smoothing_t::CESTNIK:
+                    smoothing_factor = 1 / numStates;
+                    break;
+                default:
+                    smoothing_factor = 0.0; // No smoothing 
+            }
+            node.second->computeCPT(samples, features, smoothing_factor, weights);
+            semaphore.release();
+            };
+        int i = 0;
         for (auto& node : nodes) {
-            threads.emplace_back([this, &node, &weights]() {
-                node.second->computeCPT(samples, features, laplaceSmoothing, weights);
-                });
+            semaphore.acquire();
+            threads.emplace_back(worker, std::ref(node), i++);
         }
         for (auto& thread : threads) {
             thread.join();
@@ -207,14 +241,38 @@ namespace bayesnet {
         if (!fitted) {
             throw std::logic_error("You must call fit() before calling predict()");
         }
+        // Ensure the sample size is equal to the number of features
+        if (samples.size(0) != features.size() - 1) {
+            throw std::invalid_argument("(T) Sample size (" + std::to_string(samples.size(0)) +
+                ") does not match the number of features (" + std::to_string(features.size() - 1) + ")");
+        }
         torch::Tensor result;
+        std::vector<std::thread> threads;
+        std::mutex mtx;
+        auto& semaphore = CountingSemaphore::getInstance();
         result = torch::zeros({ samples.size(1), classNumStates }, torch::kFloat64);
-        for (int i = 0; i < samples.size(1); ++i) {
-            const torch::Tensor sample = samples.index({ "...", i });
+        auto worker = [&](const torch::Tensor& sample, int i) {
+            std::string threadName = "PredictWorker-" + std::to_string(i);
+#if defined(__linux__)
+            pthread_setname_np(pthread_self(), threadName.c_str());
+#else
+            pthread_setname_np(threadName.c_str());
+#endif
             auto psample = predict_sample(sample);
             auto temp = torch::tensor(psample, torch::kFloat64);
-            //            result.index_put_({ i, "..." }, torch::tensor(predict_sample(sample), torch::kFloat64));
-            result.index_put_({ i, "..." }, temp);
+            {
+                std::lock_guard<std::mutex> lock(mtx);
+                result.index_put_({ i, "..." }, temp);
+            }
+            semaphore.release();
+            };
+        for (int i = 0; i < samples.size(1); ++i) {
+            semaphore.acquire();
+            const torch::Tensor sample = samples.index({ "...", i });
+            threads.emplace_back(worker, sample, i);
+        }
+        for (auto& thread : threads) {
+            thread.join();
         }
         if (proba)
             return result;
@@ -239,18 +297,38 @@ namespace bayesnet {
         if (!fitted) {
             throw std::logic_error("You must call fit() before calling predict()");
         }
-        std::vector<int> predictions;
+        // Ensure the sample size is equal to the number of features
+        if (tsamples.size() != features.size() - 1) {
+            throw std::invalid_argument("(V) Sample size (" + std::to_string(tsamples.size()) +
+                ") does not match the number of features (" + std::to_string(features.size() - 1) + ")");
+        }
+        std::vector<int> predictions(tsamples[0].size(), 0);
         std::vector<int> sample;
+        std::vector<std::thread> threads;
+        auto& semaphore = CountingSemaphore::getInstance();
+        auto worker = [&](const std::vector<int>& sample, const int row, int& prediction) {
+            std::string threadName = "(V)PWorker-" + std::to_string(row);
+#if defined(__linux__)
+            pthread_setname_np(pthread_self(), threadName.c_str());
+#else
+            pthread_setname_np(threadName.c_str());
+#endif
+            auto classProbabilities = predict_sample(sample);
+            auto maxElem = max_element(classProbabilities.begin(), classProbabilities.end());
+            int predictedClass = distance(classProbabilities.begin(), maxElem);
+            prediction = predictedClass;
+            semaphore.release();
+            };
         for (int row = 0; row < tsamples[0].size(); ++row) {
             sample.clear();
             for (int col = 0; col < tsamples.size(); ++col) {
                 sample.push_back(tsamples[col][row]);
             }
-            std::vector<double> classProbabilities = predict_sample(sample);
-            // Find the class with the maximum posterior probability
-            auto maxElem = max_element(classProbabilities.begin(), classProbabilities.end());
-            int predictedClass = distance(classProbabilities.begin(), maxElem);
-            predictions.push_back(predictedClass);
+            semaphore.acquire();
+            threads.emplace_back(worker, sample, row, std::ref(predictions[row]));
+        }
+        for (auto& thread : threads) {
+            thread.join();
         }
         return predictions;
     }
@@ -261,14 +339,36 @@ namespace bayesnet {
         if (!fitted) {
             throw std::logic_error("You must call fit() before calling predict_proba()");
         }
-        std::vector<std::vector<double>> predictions;
+        // Ensure the sample size is equal to the number of features
+        if (tsamples.size() != features.size() - 1) {
+            throw std::invalid_argument("(V) Sample size (" + std::to_string(tsamples.size()) +
+                ") does not match the number of features (" + std::to_string(features.size() - 1) + ")");
+        }
+        std::vector<std::vector<double>> predictions(tsamples[0].size(), std::vector<double>(classNumStates, 0.0));
         std::vector<int> sample;
+        std::vector<std::thread> threads;
+        auto& semaphore = CountingSemaphore::getInstance();
+        auto worker = [&](const std::vector<int>& sample, int row, std::vector<double>& predictions) {
+            std::string threadName = "(V)PWorker-" + std::to_string(row);
+#if defined(__linux__)
+            pthread_setname_np(pthread_self(), threadName.c_str());
+#else
+            pthread_setname_np(threadName.c_str());
+#endif
+            std::vector<double> classProbabilities = predict_sample(sample);
+            predictions = classProbabilities;
+            semaphore.release();
+            };
         for (int row = 0; row < tsamples[0].size(); ++row) {
             sample.clear();
             for (int col = 0; col < tsamples.size(); ++col) {
                 sample.push_back(tsamples[col][row]);
             }
-            predictions.push_back(predict_sample(sample));
+            semaphore.acquire();
+            threads.emplace_back(worker, sample, row, std::ref(predictions[row]));
+        }
+        for (auto& thread : threads) {
+            thread.join();
         }
         return predictions;
     }
@@ -286,11 +386,6 @@ namespace bayesnet {
     // Return 1xn std::vector of probabilities
     std::vector<double> Network::predict_sample(const std::vector<int>& sample)
     {
-        // Ensure the sample size is equal to the number of features
-        if (sample.size() != features.size() - 1) {
-            throw std::invalid_argument("Sample size (" + std::to_string(sample.size()) +
-                ") does not match the number of features (" + std::to_string(features.size() - 1) + ")");
-        }
         std::map<std::string, int> evidence;
         for (int i = 0; i < sample.size(); ++i) {
             evidence[features[i]] = sample[i];
@@ -300,44 +395,26 @@ namespace bayesnet {
     // Return 1xn std::vector of probabilities
     std::vector<double> Network::predict_sample(const torch::Tensor& sample)
     {
-        // Ensure the sample size is equal to the number of features
-        if (sample.size(0) != features.size() - 1) {
-            throw std::invalid_argument("Sample size (" + std::to_string(sample.size(0)) +
-                ") does not match the number of features (" + std::to_string(features.size() - 1) + ")");
-        }
         std::map<std::string, int> evidence;
         for (int i = 0; i < sample.size(0); ++i) {
             evidence[features[i]] = sample[i].item<int>();
         }
         return exactInference(evidence);
     }
-    double Network::computeFactor(std::map<std::string, int>& completeEvidence)
-    {
-        double result = 1.0;
-        for (auto& node : getNodes()) {
-            result *= node.second->getFactorValue(completeEvidence);
-        }
-        return result;
-    }
     std::vector<double> Network::exactInference(std::map<std::string, int>& evidence)
     {
         std::vector<double> result(classNumStates, 0.0);
-        std::vector<std::thread> threads;
-        std::mutex mtx;
+        auto completeEvidence = std::map<std::string, int>(evidence);
         for (int i = 0; i < classNumStates; ++i) {
-            threads.emplace_back([this, &result, &evidence, i, &mtx]() {
-                auto completeEvidence = std::map<std::string, int>(evidence);
-                completeEvidence[getClassName()] = i;
-                double factor = computeFactor(completeEvidence);
-                std::lock_guard<std::mutex> lock(mtx);
-                result[i] = factor;
-                });
-        }
-        for (auto& thread : threads) {
-            thread.join();
+            completeEvidence[getClassName()] = i;
+            double partial = 1.0;
+            for (auto& node : getNodes()) {
+                partial *= node.second->getFactorValue(completeEvidence);
+            }
+            result[i] = partial;
         }
         // Normalize result
-        double sum = accumulate(result.begin(), result.end(), 0.0);
+        double sum = std::accumulate(result.begin(), result.end(), 0.0);
         transform(result.begin(), result.end(), result.begin(), [sum](const double& value) { return value / sum; });
         return result;
     }
@@ -410,11 +487,7 @@ namespace bayesnet {
                                 result.insert(it2, fatherName);
                                 ending = false;
                             }
-                        } else {
-                            throw std::logic_error("Error in topological sort because of node " + feature + " is not in result");
                         }
-                    } else {
-                        throw std::logic_error("Error in topological sort because of node father " + fatherName + " is not in result");
                     }
                 }
             }

bayesnet/network/Network.h

@@ -10,16 +10,16 @@
 #include <vector>
 #include "bayesnet/config.h"
 #include "Node.h"
+#include "Smoothing.h"
 
 namespace bayesnet {
+
     class Network {
     public:
         Network();
-        explicit Network(float);
         explicit Network(const Network&);
         ~Network() = default;
         torch::Tensor& getSamples();
-        float getMaxThreads() const;
         void addNode(const std::string&);
         void addEdge(const std::string&, const std::string&);
         std::map<std::string, std::unique_ptr<Node>>& getNodes();
@@ -32,9 +32,9 @@ namespace bayesnet {
         /*
         Notice: Nodes have to be inserted in the same order as they are in the dataset, i.e., first node is first column and so on.
         */
-        void fit(const std::vector<std::vector<int>>& input_data, const std::vector<int>& labels, const std::vector<double>& weights, const std::vector<std::string>& featureNames, const std::string& className, const std::map<std::string, std::vector<int>>& states);
-        void fit(const torch::Tensor& X, const torch::Tensor& y, const torch::Tensor& weights, const std::vector<std::string>& featureNames, const std::string& className, const std::map<std::string, std::vector<int>>& states);
-        void fit(const torch::Tensor& samples, const torch::Tensor& weights, const std::vector<std::string>& featureNames, const std::string& className, const std::map<std::string, std::vector<int>>& states);
+        void fit(const std::vector<std::vector<int>>& input_data, const std::vector<int>& labels, const std::vector<double>& weights, const std::vector<std::string>& featureNames, const std::string& className, const std::map<std::string, std::vector<int>>& states, const Smoothing_t smoothing);
+        void fit(const torch::Tensor& X, const torch::Tensor& y, const torch::Tensor& weights, const std::vector<std::string>& featureNames, const std::string& className, const std::map<std::string, std::vector<int>>& states, const Smoothing_t smoothing);
+        void fit(const torch::Tensor& samples, const torch::Tensor& weights, const std::vector<std::string>& featureNames, const std::string& className, const std::map<std::string, std::vector<int>>& states, const Smoothing_t smoothing);
         std::vector<int> predict(const std::vector<std::vector<int>>&); // Return mx1 std::vector of predictions
         torch::Tensor predict(const torch::Tensor&); // Return mx1 tensor of predictions
         torch::Tensor predict_tensor(const torch::Tensor& samples, const bool proba);
@@ -50,19 +50,16 @@ namespace bayesnet {
     private:
         std::map<std::string, std::unique_ptr<Node>> nodes;
         bool fitted;
-        float maxThreads = 0.95;
         int classNumStates;
         std::vector<std::string> features; // Including classname
         std::string className;
-        double laplaceSmoothing;
         torch::Tensor samples; // n+1xm tensor used to fit the model
         bool isCyclic(const std::string&, std::unordered_set<std::string>&, std::unordered_set<std::string>&);
         std::vector<double> predict_sample(const std::vector<int>&);
         std::vector<double> predict_sample(const torch::Tensor&);
         std::vector<double> exactInference(std::map<std::string, int>&);
-        double computeFactor(std::map<std::string, int>&);
-        void completeFit(const std::map<std::string, std::vector<int>>& states, const torch::Tensor& weights);
-        void checkFitData(int n_features, int n_samples, int n_samples_y, const std::vector<std::string>& featureNames, const std::string& className, const std::map<std::string, std::vector<int>>& states, const torch::Tensor& weights);
+        void completeFit(const std::map<std::string, std::vector<int>>& states, const torch::Tensor& weights, const Smoothing_t smoothing);
+        void checkFitData(int n_samples, int n_features, int n_samples_y, const std::vector<std::string>& featureNames, const std::string& className, const std::map<std::string, std::vector<int>>& states, const torch::Tensor& weights);
         void setStates(const std::map<std::string, std::vector<int>>&);
     };
 }

bayesnet/network/Node.cc

@@ -9,7 +9,7 @@
 namespace bayesnet {
 
     Node::Node(const std::string& name)
-        : name(name), numStates(0), cpTable(torch::Tensor()), parents(std::vector<Node*>()), children(std::vector<Node*>())
+        : name(name)
     {
     }
     void Node::clear()
@@ -90,52 +90,60 @@ namespace bayesnet {
         }
         return result;
     }
-    void Node::computeCPT(const torch::Tensor& dataset, const std::vector<std::string>& features, const double laplaceSmoothing, const torch::Tensor& weights)
+    void Node::computeCPT(const torch::Tensor& dataset, const std::vector<std::string>& features, const double smoothing, const torch::Tensor& weights)
     {
         dimensions.clear();
+        dimensions.reserve(parents.size() + 1);
         // Get dimensions of the CPT
         dimensions.push_back(numStates);
-        transform(parents.begin(), parents.end(), back_inserter(dimensions), [](const auto& parent) { return parent->getNumStates(); });
-
-        // Create a tensor of zeros with the dimensions of the CPT
-        cpTable = torch::zeros(dimensions, torch::kFloat) + laplaceSmoothing;
-        // Fill table with counts
-        auto pos = find(features.begin(), features.end(), name);
-        if (pos == features.end()) {
-            throw std::logic_error("Feature " + name + " not found in dataset");
+        for (const auto& parent : parents) {
+            dimensions.push_back(parent->getNumStates());
         }
-        int name_index = pos - features.begin();
+        //transform(parents.begin(), parents.end(), back_inserter(dimensions), [](const auto& parent) { return parent->getNumStates(); });
+        // Create a tensor initialized with smoothing
+        cpTable = torch::full(dimensions, smoothing, torch::kDouble);
+        // Create a map for quick feature index lookup
+        std::unordered_map<std::string, int> featureIndexMap;
+        for (size_t i = 0; i < features.size(); ++i) {
+            featureIndexMap[features[i]] = i;
+        }
+        // Fill table with counts
+        // Get the index of this node's feature
+        int name_index = featureIndexMap[name];
+        // Get parent indices in dataset
+        std::vector<int> parent_indices;
+        parent_indices.reserve(parents.size());
+        for (const auto& parent : parents) {
+            parent_indices.push_back(featureIndexMap[parent->getName()]);
+        }
+        c10::List<c10::optional<at::Tensor>> coordinates;
         for (int n_sample = 0; n_sample < dataset.size(1); ++n_sample) {
-            c10::List<c10::optional<at::Tensor>> coordinates;
-            coordinates.push_back(dataset.index({ name_index, n_sample }));
-            for (auto parent : parents) {
-                pos = find(features.begin(), features.end(), parent->getName());
-                if (pos == features.end()) {
-                    throw std::logic_error("Feature parent " + parent->getName() + " not found in dataset");
-                }
-                int parent_index = pos - features.begin();
-                coordinates.push_back(dataset.index({ parent_index, n_sample }));
+            coordinates.clear();
+            auto sample = dataset.index({ "...", n_sample });
+            coordinates.push_back(sample[name_index]);
+            for (size_t i = 0; i < parent_indices.size(); ++i) {
+                coordinates.push_back(sample[parent_indices[i]]);
             }
             // Increment the count of the corresponding coordinate
-            cpTable.index_put_({ coordinates }, cpTable.index({ coordinates }) + weights.index({ n_sample }).item<double>());
+            cpTable.index_put_({ coordinates }, weights.index({ n_sample }), true);
         }
-        // Normalize the counts
-        cpTable = cpTable / cpTable.sum(0);
+        // Normalize the counts (dividing each row by the sum of the row)
+        cpTable /= cpTable.sum(0, true);
     }
-    float Node::getFactorValue(std::map<std::string, int>& evidence)
+    double Node::getFactorValue(std::map<std::string, int>& evidence)
     {
         c10::List<c10::optional<at::Tensor>> coordinates;
         // following predetermined order of indices in the cpTable (see Node.h)
         coordinates.push_back(at::tensor(evidence[name]));
         transform(parents.begin(), parents.end(), std::back_inserter(coordinates), [&evidence](const auto& parent) { return at::tensor(evidence[parent->getName()]); });
-        return cpTable.index({ coordinates }).item<float>();
+        return cpTable.index({ coordinates }).item<double>();
     }
     std::vector<std::string> Node::graph(const std::string& className)
     {
         auto output = std::vector<std::string>();
         auto suffix = name == className ? ", fontcolor=red, fillcolor=lightblue, style=filled " : "";
-        output.push_back(name + " [shape=circle" + suffix + "] \n");
-        transform(children.begin(), children.end(), back_inserter(output), [this](const auto& child) { return name + " -> " + child->getName(); });
+        output.push_back("\"" + name + "\" [shape=circle" + suffix + "] \n");
+        transform(children.begin(), children.end(), back_inserter(output), [this](const auto& child) { return "\"" + name + "\" -> \"" + child->getName() + "\""; });
         return output;
     }
 }

bayesnet/network/Node.h

@@ -12,14 +12,6 @@
 #include <torch/torch.h>
 namespace bayesnet {
     class Node {
-    private:
-        std::string name;
-        std::vector<Node*> parents;
-        std::vector<Node*> children;
-        int numStates; // number of states of the variable
-        torch::Tensor cpTable; // Order of indices is 0-> node variable, 1-> 1st parent, 2-> 2nd parent, ...
-        std::vector<int64_t> dimensions; // dimensions of the cpTable
-        std::vector<std::pair<std::string, std::string>> combinations(const std::vector<std::string>&);
     public:
         explicit Node(const std::string&);
         void clear();
@@ -31,12 +23,20 @@ namespace bayesnet {
         std::vector<Node*>& getParents();
         std::vector<Node*>& getChildren();
         torch::Tensor& getCPT();
-        void computeCPT(const torch::Tensor& dataset, const std::vector<std::string>& features, const double laplaceSmoothing, const torch::Tensor& weights);
+        void computeCPT(const torch::Tensor& dataset, const std::vector<std::string>& features, const double smoothing, const torch::Tensor& weights);
         int getNumStates() const;
         void setNumStates(int);
         unsigned minFill();
         std::vector<std::string> graph(const std::string& clasName); // Returns a std::vector of std::strings representing the graph in graphviz format
-        float getFactorValue(std::map<std::string, int>&);
+        double getFactorValue(std::map<std::string, int>&);
+    private:
+        std::string name;
+        std::vector<Node*> parents;
+        std::vector<Node*> children;
+        int numStates = 0; // number of states of the variable
+        torch::Tensor cpTable; // Order of indices is 0-> node variable, 1-> 1st parent, 2-> 2nd parent, ...
+        std::vector<int64_t> dimensions; // dimensions of the cpTable
+        std::vector<std::pair<std::string, std::string>> combinations(const std::vector<std::string>&);
     };
 }
 #endif

bayesnet/network/Smoothing.h

@@ -0,0 +1,17 @@
+// ***************************************************************
+// SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez
+// SPDX-FileType: SOURCE
+// SPDX-License-Identifier: MIT
+// ***************************************************************
+
+#ifndef SMOOTHING_H
+#define SMOOTHING_H
+namespace bayesnet {
+    enum class Smoothing_t {
+        NONE = -1,
+        ORIGINAL = 0,
+        LAPLACE,
+        CESTNIK
+    };
+}
+#endif // SMOOTHING_H

bayesnet/utils/BayesMetrics.cc

@@ -4,29 +4,79 @@
 // SPDX-License-Identifier: MIT
 // ***************************************************************
 
+#include <map>
+#include <unordered_map>
+#include <tuple>
 #include "Mst.h"
 #include "BayesMetrics.h"
 namespace bayesnet {
     //samples is n+1xm tensor used to fit the model
     Metrics::Metrics(const torch::Tensor& samples, const std::vector<std::string>& features, const std::string& className, const int classNumStates)
         : samples(samples)
-        , features(features)
         , className(className)
+        , features(features)
         , classNumStates(classNumStates)
     {
     }
     //samples is n+1xm std::vector used to fit the model
     Metrics::Metrics(const std::vector<std::vector<int>>& vsamples, const std::vector<int>& labels, const std::vector<std::string>& features, const std::string& className, const int classNumStates)
-        : features(features)
+        : samples(torch::zeros({ static_cast<int>(vsamples.size() + 1), static_cast<int>(vsamples[0].size()) }, torch::kInt32))
         , className(className)
+        , features(features)
         , classNumStates(classNumStates)
-        , samples(torch::zeros({ static_cast<int>(vsamples.size() + 1), static_cast<int>(vsamples[0].size()) }, torch::kInt32))
     {
         for (int i = 0; i < vsamples.size(); ++i) {
             samples.index_put_({ i,  "..." }, torch::tensor(vsamples[i], torch::kInt32));
         }
         samples.index_put_({ -1, "..." }, torch::tensor(labels, torch::kInt32));
     }
+    std::vector<std::pair<int, int>> Metrics::SelectKPairs(const torch::Tensor& weights, std::vector<int>& featuresExcluded, bool ascending, unsigned k)
+    {
+        // Return the K Best features 
+        auto n = features.size();
+        // compute scores
+        scoresKPairs.clear();
+        pairsKBest.clear();
+        auto labels = samples.index({ -1, "..." });
+        for (int i = 0; i < n - 1; ++i) {
+            if (std::find(featuresExcluded.begin(), featuresExcluded.end(), i) != featuresExcluded.end()) {
+                continue;
+            }
+            for (int j = i + 1; j < n; ++j) {
+                if (std::find(featuresExcluded.begin(), featuresExcluded.end(), j) != featuresExcluded.end()) {
+                    continue;
+                }
+                auto key = std::make_pair(i, j);
+                auto value = conditionalMutualInformation(samples.index({ i, "..." }), samples.index({ j, "..." }), labels, weights);
+                scoresKPairs.push_back({ key, value });
+            }
+        }
+        // sort scores
+        if (ascending) {
+            sort(scoresKPairs.begin(), scoresKPairs.end(), [](auto& a, auto& b)
+                { return a.second < b.second; });
+
+        } else {
+            sort(scoresKPairs.begin(), scoresKPairs.end(), [](auto& a, auto& b)
+                { return a.second > b.second; });
+        }
+        for (auto& [pairs, score] : scoresKPairs) {
+            pairsKBest.push_back(pairs);
+        }
+        if (k != 0 && k < pairsKBest.size()) {
+            if (ascending) {
+                int limit = pairsKBest.size() - k;
+                for (int i = 0; i < limit; i++) {
+                    pairsKBest.erase(pairsKBest.begin());
+                    scoresKPairs.erase(scoresKPairs.begin());
+                }
+            } else {
+                pairsKBest.resize(k);
+                scoresKPairs.resize(k);
+            }
+        }
+        return pairsKBest;
+    }
     std::vector<int> Metrics::SelectKBestWeighted(const torch::Tensor& weights, bool ascending, unsigned k)
     {
         // Return the K Best features 
@@ -66,7 +116,10 @@ namespace bayesnet {
     {
         return scoresKBest;
     }
-
+    std::vector<std::pair<std::pair<int, int>, double>> Metrics::getScoresKPairs() const
+    {
+        return scoresKPairs;
+    }
     torch::Tensor Metrics::conditionalEdge(const torch::Tensor& weights)
     {
         auto result = std::vector<double>();
@@ -105,14 +158,8 @@ namespace bayesnet {
         }
         return matrix;
     }
-    // To use in Python
-    std::vector<float> Metrics::conditionalEdgeWeights(std::vector<float>& weights_)
-    {
-        const torch::Tensor weights = torch::tensor(weights_);
-        auto matrix = conditionalEdge(weights);
-        std::vector<float> v(matrix.data_ptr<float>(), matrix.data_ptr<float>() + matrix.numel());
-        return v;
-    }
+    // Measured in nats (natural logarithm (log) base e)
+    // Elements of Information Theory, 2nd Edition, Thomas M. Cover, Joy A. Thomas p. 14
     double Metrics::entropy(const torch::Tensor& feature, const torch::Tensor& weights)
     {
         torch::Tensor counts = feature.bincount(weights);
@@ -151,10 +198,54 @@ namespace bayesnet {
         }
         return entropyValue;
     }
-    // I(X;Y) = H(Y) - H(Y|X)
+    // H(X|Y,C) = sum_{y in Y, c in C} p(x,c) H(X|Y=y,C=c)
+    double Metrics::conditionalEntropy(const torch::Tensor& firstFeature, const torch::Tensor& secondFeature, const torch::Tensor& labels, const torch::Tensor& weights)
+    {
+        // Ensure the tensors are of the same length
+        assert(firstFeature.size(0) == secondFeature.size(0) && firstFeature.size(0) == labels.size(0) && firstFeature.size(0) == weights.size(0));
+        // Convert tensors to vectors for easier processing
+        auto firstFeatureData = firstFeature.accessor<int, 1>();
+        auto secondFeatureData = secondFeature.accessor<int, 1>();
+        auto labelsData = labels.accessor<int, 1>();
+        auto weightsData = weights.accessor<double, 1>();
+        int numSamples = firstFeature.size(0);
+        // Maps for joint and marginal probabilities
+        std::map<std::tuple<int, int, int>, double> jointCount;
+        std::map<std::tuple<int, int>, double> marginalCount;
+        // Compute joint and marginal counts
+        for (int i = 0; i < numSamples; ++i) {
+            auto keyJoint = std::make_tuple(firstFeatureData[i], labelsData[i], secondFeatureData[i]);
+            auto keyMarginal = std::make_tuple(firstFeatureData[i], labelsData[i]);
+
+            jointCount[keyJoint] += weightsData[i];
+            marginalCount[keyMarginal] += weightsData[i];
+        }
+        // Total weight sum
+        double totalWeight = torch::sum(weights).item<double>();
+        if (totalWeight == 0)
+            return 0;
+        // Compute the conditional entropy
+        double conditionalEntropy = 0.0;
+        for (const auto& [keyJoint, jointFreq] : jointCount) {
+            auto [x, c, y] = keyJoint;
+            auto keyMarginal = std::make_tuple(x, c);
+            //double p_xc = marginalCount[keyMarginal] / totalWeight;
+            double p_y_given_xc = jointFreq / marginalCount[keyMarginal];
+            if (p_y_given_xc > 0) {
+                conditionalEntropy -= (jointFreq / totalWeight) * std::log(p_y_given_xc);
+            }
+        }
+        return conditionalEntropy;
+    }
+    // I(X;Y) = H(Y) - H(Y|X) ; I(X;Y) >= 0
     double Metrics::mutualInformation(const torch::Tensor& firstFeature, const torch::Tensor& secondFeature, const torch::Tensor& weights)
     {
-        return entropy(firstFeature, weights) - conditionalEntropy(firstFeature, secondFeature, weights);
+        return std::max(entropy(firstFeature, weights) - conditionalEntropy(firstFeature, secondFeature, weights), 0.0);
+    }
+    // I(X;Y|C) = H(X|C) - H(X|Y,C) >= 0
+    double Metrics::conditionalMutualInformation(const torch::Tensor& firstFeature, const torch::Tensor& secondFeature, const torch::Tensor& labels, const torch::Tensor& weights)
+    {
+        return std::max(conditionalEntropy(firstFeature, labels, weights) - conditionalEntropy(firstFeature, secondFeature, labels, weights), 0.0);
     }
     /*
     Compute the maximum spanning tree considering the weights as distances

bayesnet/utils/BayesMetrics.h

@@ -16,21 +16,26 @@ namespace bayesnet {
         Metrics(const torch::Tensor& samples, const std::vector<std::string>& features, const std::string& className, const int classNumStates);
         Metrics(const std::vector<std::vector<int>>& vsamples, const std::vector<int>& labels, const std::vector<std::string>& features, const std::string& className, const int classNumStates);
         std::vector<int> SelectKBestWeighted(const torch::Tensor& weights, bool ascending = false, unsigned k = 0);
+        std::vector<std::pair<int, int>> SelectKPairs(const torch::Tensor& weights, std::vector<int>& featuresExcluded, bool ascending = false, unsigned k = 0);
         std::vector<double> getScoresKBest() const;
+        std::vector<std::pair<std::pair<int, int>, double>> getScoresKPairs() const;
         double mutualInformation(const torch::Tensor& firstFeature, const torch::Tensor& secondFeature, const torch::Tensor& weights);
-        std::vector<float> conditionalEdgeWeights(std::vector<float>& weights); // To use in Python
+        double conditionalMutualInformation(const torch::Tensor& firstFeature, const torch::Tensor& secondFeature, const torch::Tensor& labels, const torch::Tensor& weights);
         torch::Tensor conditionalEdge(const torch::Tensor& weights);
         std::vector<std::pair<int, int>> maximumSpanningTree(const std::vector<std::string>& features, const torch::Tensor& weights, const int root);
+        // Measured in nats (natural logarithm (log) base e)
+        // Elements of Information Theory, 2nd Edition, Thomas M. Cover, Joy A. Thomas p. 14
+        double entropy(const torch::Tensor& feature, const torch::Tensor& weights);
+        double conditionalEntropy(const torch::Tensor& firstFeature, const torch::Tensor& secondFeature, const torch::Tensor& labels, const torch::Tensor& weights);
     protected:
         torch::Tensor samples; // n+1xm torch::Tensor used to fit the model where samples[-1] is the y std::vector
         std::string className;
-        double entropy(const torch::Tensor& feature, const torch::Tensor& weights);
         std::vector<std::string> features;
         template <class T>
         std::vector<std::pair<T, T>> doCombinations(const std::vector<T>& source)
         {
             std::vector<std::pair<T, T>> result;
-            for (int i = 0; i < source.size(); ++i) {
+            for (int i = 0; i < source.size() - 1; ++i) {
                 T temp = source[i];
                 for (int j = i + 1; j < source.size(); ++j) {
                     result.push_back({ temp, source[j] });
@@ -49,6 +54,8 @@ namespace bayesnet {
         int classNumStates = 0;
         std::vector<double> scoresKBest;
         std::vector<int> featuresKBest; // sorted indices of the features
+        std::vector<std::pair<int, int>> pairsKBest; // sorted indices of the pairs
+        std::vector<std::pair<std::pair<int, int>, double>> scoresKPairs;
         double conditionalEntropy(const torch::Tensor& firstFeature, const torch::Tensor& secondFeature, const torch::Tensor& weights);
     };
 }

bayesnet/utils/CountingSemaphore.h

@@ -0,0 +1,54 @@
+#ifndef COUNTING_SEMAPHORE_H
+#define COUNTING_SEMAPHORE_H
+#include <mutex>
+#include <condition_variable>
+#include <algorithm>
+#include <thread>
+#include <mutex>
+#include <condition_variable>
+#include <thread>
+
+class CountingSemaphore {
+public:
+    static CountingSemaphore& getInstance()
+    {
+        static CountingSemaphore instance;
+        return instance;
+    }
+    // Delete copy constructor and assignment operator
+    CountingSemaphore(const CountingSemaphore&) = delete;
+    CountingSemaphore& operator=(const CountingSemaphore&) = delete;
+    void acquire()
+    {
+        std::unique_lock<std::mutex> lock(mtx_);
+        cv_.wait(lock, [this]() { return count_ > 0; });
+        --count_;
+    }
+    void release()
+    {
+        std::lock_guard<std::mutex> lock(mtx_);
+        ++count_;
+        if (count_ <= max_count_) {
+            cv_.notify_one();
+        }
+    }
+    uint getCount() const
+    {
+        return count_;
+    }
+    uint getMaxCount() const
+    {
+        return max_count_;
+    }
+private:
+    CountingSemaphore()
+        : max_count_(std::max(1u, static_cast<uint>(0.95 * std::thread::hardware_concurrency()))),
+        count_(max_count_)
+    {
+    }
+    std::mutex mtx_;
+    std::condition_variable cv_;
+    const uint max_count_;
+    uint count_;
+};
+#endif

bayesnet/utils/Mst.cc

@@ -53,14 +53,14 @@ namespace bayesnet {
         }
     }
 
-    void insertElement(std::list<int>& variables, int variable)
+    void MST::insertElement(std::list<int>& variables, int variable)
     {
         if (std::find(variables.begin(), variables.end(), variable) == variables.end()) {
             variables.push_front(variable);
         }
     }
 
-    std::vector<std::pair<int, int>> reorder(std::vector<std::pair<float, std::pair<int, int>>> T, int root_original)
+    std::vector<std::pair<int, int>> MST::reorder(std::vector<std::pair<float, std::pair<int, int>>> T, int root_original)
     {
         // Create the edges of a DAG from the MST
         // replacing unordered_set with list because unordered_set cannot guarantee the order of the elements inserted

bayesnet/utils/Mst.h

@@ -14,6 +14,8 @@ namespace bayesnet {
     public:
         MST() = default;
         MST(const std::vector<std::string>& features, const torch::Tensor& weights, const int root);
+        void insertElement(std::list<int>& variables, int variable);
+        std::vector<std::pair<int, int>> reorder(std::vector<std::pair<float, std::pair<int, int>>> T, int root_original);
         std::vector<std::pair<int, int>> maximumSpanningTree();
     private:
         torch::Tensor weights;

bayesnet/utils/TensorUtils.h

@@ -0,0 +1,51 @@
+#ifndef TENSORUTILS_H
+#define TENSORUTILS_H
+#include <torch/torch.h>
+#include <vector>
+namespace bayesnet {
+    class TensorUtils {
+    public:
+        static std::vector<std::vector<int>> to_matrix(const torch::Tensor& X)
+        {
+            // Ensure tensor is contiguous in memory
+            auto X_contig = X.contiguous();
+
+            // Access tensor data pointer directly
+            auto data_ptr = X_contig.data_ptr<int>();
+
+            // IF you are using int64_t as the data type, use the following line
+            //auto data_ptr = X_contig.data_ptr<int64_t>();
+            //std::vector<std::vector<int64_t>> data(X.size(0), std::vector<int64_t>(X.size(1)));
+
+            // Prepare output container
+            std::vector<std::vector<int>> data(X.size(0), std::vector<int>(X.size(1)));
+
+            // Fill the 2D vector in a single loop using pointer arithmetic
+            int rows = X.size(0);
+            int cols = X.size(1);
+            for (int i = 0; i < rows; ++i) {
+                std::copy(data_ptr + i * cols, data_ptr + (i + 1) * cols, data[i].begin());
+            }
+            return data;
+        }
+        template <typename T>
+        static std::vector<T> to_vector(const torch::Tensor& y)
+        {
+            // Ensure the tensor is contiguous in memory
+            auto y_contig = y.contiguous();
+
+            // Access data pointer
+            auto data_ptr = y_contig.data_ptr<T>();
+
+            // Prepare output container
+            std::vector<T> data(y.size(0));
+
+            // Copy data efficiently
+            std::copy(data_ptr, data_ptr + y.size(0), data.begin());
+
+            return data;
+        }
+    };
+}
+
+#endif // TENSORUTILS_H

cmake/modules/CodeCoverage.cmake

@@ -137,7 +137,7 @@
 
 include(CMakeParseArguments)
 
-option(CODE_COVERAGE_VERBOSE "Verbose information" FALSE)
+option(CODE_COVERAGE_VERBOSE "Verbose information" TRUE)
 
 # Check prereqs
 find_program( GCOV_PATH gcov )
@@ -160,7 +160,11 @@ foreach(LANG ${LANGUAGES})
     endif()
   elseif(NOT "${CMAKE_${LANG}_COMPILER_ID}" MATCHES "GNU"
          AND NOT "${CMAKE_${LANG}_COMPILER_ID}" MATCHES "(LLVM)?[Ff]lang")
-    message(FATAL_ERROR "Compiler is not GNU or Flang! Aborting...")
+         if ("${LANG}" MATCHES "CUDA")
+             message(STATUS "Ignoring CUDA")
+        else()
+            message(FATAL_ERROR "Compiler is not GNU or Flang! Aborting...")
+        endif()
   endif()
 endforeach()
 

diagrams/BayesNet.puml

@@ -1,36 +1,16 @@
 @startuml
 title clang-uml class diagram model
-class "bayesnet::Metrics" as C_0000736965376885623323
-class C_0000736965376885623323 #aliceblue;line:blue;line.dotted;text:blue {
-+Metrics() = default : void
-+Metrics(const torch::Tensor & samples, const std::vector<std::string> & features, const std::string & className, const int classNumStates) : void
-+Metrics(const std::vector<std::vector<int>> & vsamples, const std::vector<int> & labels, const std::vector<std::string> & features, const std::string & className, const int classNumStates) : void
-..
-+SelectKBestWeighted(const torch::Tensor & weights, bool ascending = false, unsigned int k = 0) : std::vector<int>
-+conditionalEdge(const torch::Tensor & weights) : torch::Tensor
-+conditionalEdgeWeights(std::vector<float> & weights) : std::vector<float>
-#doCombinations<T>(const std::vector<T> & source) : std::vector<std::pair<T, T> >
-#entropy(const torch::Tensor & feature, const torch::Tensor & weights) : double
-+getScoresKBest() const : std::vector<double>
-+maximumSpanningTree(const std::vector<std::string> & features, const torch::Tensor & weights, const int root) : std::vector<std::pair<int,int>>
-+mutualInformation(const torch::Tensor & firstFeature, const torch::Tensor & secondFeature, const torch::Tensor & weights) : double
-#pop_first<T>(std::vector<T> & v) : T
-__
-#className : std::string
-#features : std::vector<std::string>
-#samples : torch::Tensor
-}
-class "bayesnet::Node" as C_0001303524929067080934
-class C_0001303524929067080934 #aliceblue;line:blue;line.dotted;text:blue {
+class "bayesnet::Node" as C_0010428199432536647474
+class C_0010428199432536647474 #aliceblue;line:blue;line.dotted;text:blue {
 +Node(const std::string &) : void
 ..
 +addChild(Node *) : void
 +addParent(Node *) : void
 +clear() : void
-+computeCPT(const torch::Tensor & dataset, const std::vector<std::string> & features, const double laplaceSmoothing, const torch::Tensor & weights) : void
++computeCPT(const torch::Tensor & dataset, const std::vector<std::string> & features, const double smoothing, const torch::Tensor & weights) : void
 +getCPT() : torch::Tensor &
 +getChildren() : std::vector<Node *> &
-+getFactorValue(std::map<std::string,int> &) : float
++getFactorValue(std::map<std::string,int> &) : double
 +getName() const : std::string
 +getNumStates() const : int
 +getParents() : std::vector<Node *> &
@@ -41,24 +21,29 @@ class C_0001303524929067080934 #aliceblue;line:blue;line.dotted;text:blue {
 +setNumStates(int) : void
 __
 }
-class "bayesnet::Network" as C_0001186707649890429575
-class C_0001186707649890429575 #aliceblue;line:blue;line.dotted;text:blue {
+enum "bayesnet::Smoothing_t" as C_0013393078277439680282
+enum C_0013393078277439680282 {
+NONE
+ORIGINAL
+LAPLACE
+CESTNIK
+}
+class "bayesnet::Network" as C_0009493661199123436603
+class C_0009493661199123436603 #aliceblue;line:blue;line.dotted;text:blue {
 +Network() : void
-+Network(float) : void
 +Network(const Network &) : void
 +~Network() = default : void
 ..
 +addEdge(const std::string &, const std::string &) : void
 +addNode(const std::string &) : void
 +dump_cpt() const : std::string
-+fit(const torch::Tensor & samples, const torch::Tensor & weights, const std::vector<std::string> & featureNames, const std::string & className, const std::map<std::string,std::vector<int>> & states) : void
-+fit(const torch::Tensor & X, const torch::Tensor & y, const torch::Tensor & weights, const std::vector<std::string> & featureNames, const std::string & className, const std::map<std::string,std::vector<int>> & states) : void
-+fit(const std::vector<std::vector<int>> & input_data, const std::vector<int> & labels, const std::vector<double> & weights, const std::vector<std::string> & featureNames, const std::string & className, const std::map<std::string,std::vector<int>> & states) : void
++fit(const torch::Tensor & samples, const torch::Tensor & weights, const std::vector<std::string> & featureNames, const std::string & className, const std::map<std::string,std::vector<int>> & states, const Smoothing_t smoothing) : void
++fit(const torch::Tensor & X, const torch::Tensor & y, const torch::Tensor & weights, const std::vector<std::string> & featureNames, const std::string & className, const std::map<std::string,std::vector<int>> & states, const Smoothing_t smoothing) : void
++fit(const std::vector<std::vector<int>> & input_data, const std::vector<int> & labels, const std::vector<double> & weights, const std::vector<std::string> & featureNames, const std::string & className, const std::map<std::string,std::vector<int>> & states, const Smoothing_t smoothing) : void
 +getClassName() const : std::string
 +getClassNumStates() const : int
 +getEdges() const : std::vector<std::pair<std::string,std::string>>
 +getFeatures() const : std::vector<std::string>
-+getMaxThreads() const : float
 +getNodes() : std::map<std::string,std::unique_ptr<Node>> &
 +getNumEdges() const : int
 +getSamples() : torch::Tensor &
@@ -76,21 +61,21 @@ class C_0001186707649890429575 #aliceblue;line:blue;line.dotted;text:blue {
 +version() : std::string
 __
 }
-enum "bayesnet::status_t" as C_0000738420730783851375
-enum C_0000738420730783851375 {
+enum "bayesnet::status_t" as C_0005907365846270811004
+enum C_0005907365846270811004 {
 NORMAL
 WARNING
 ERROR
 }
-abstract "bayesnet::BaseClassifier" as C_0000327135989451974539
-abstract C_0000327135989451974539 #aliceblue;line:blue;line.dotted;text:blue {
+abstract "bayesnet::BaseClassifier" as C_0002617087915615796317
+abstract C_0002617087915615796317 #aliceblue;line:blue;line.dotted;text:blue {
 +~BaseClassifier() = default : void
 ..
 {abstract} +dump_cpt() const = 0 : std::string
-{abstract} +fit(torch::Tensor & X, torch::Tensor & y, const std::vector<std::string> & features, const std::string & className, std::map<std::string,std::vector<int>> & states) = 0 : BaseClassifier &
-{abstract} +fit(torch::Tensor & dataset, const std::vector<std::string> & features, const std::string & className, std::map<std::string,std::vector<int>> & states) = 0 : BaseClassifier &
-{abstract} +fit(torch::Tensor & dataset, const std::vector<std::string> & features, const std::string & className, std::map<std::string,std::vector<int>> & states, const torch::Tensor & weights) = 0 : BaseClassifier &
-{abstract} +fit(std::vector<std::vector<int>> & X, std::vector<int> & y, const std::vector<std::string> & features, const std::string & className, std::map<std::string,std::vector<int>> & states) = 0 : BaseClassifier &
+{abstract} +fit(torch::Tensor & X, torch::Tensor & y, const std::vector<std::string> & features, const std::string & className, std::map<std::string,std::vector<int>> & states, const Smoothing_t smoothing) = 0 : BaseClassifier &
+{abstract} +fit(torch::Tensor & dataset, const std::vector<std::string> & features, const std::string & className, std::map<std::string,std::vector<int>> & states, const Smoothing_t smoothing) = 0 : BaseClassifier &
+{abstract} +fit(torch::Tensor & dataset, const std::vector<std::string> & features, const std::string & className, std::map<std::string,std::vector<int>> & states, const torch::Tensor & weights, const Smoothing_t smoothing) = 0 : BaseClassifier &
+{abstract} +fit(std::vector<std::vector<int>> & X, std::vector<int> & y, const std::vector<std::string> & features, const std::string & className, std::map<std::string,std::vector<int>> & states, const Smoothing_t smoothing) = 0 : BaseClassifier &
 {abstract} +getClassNumStates() const = 0 : int
 {abstract} +getNotes() const = 0 : std::vector<std::string>
 {abstract} +getNumberOfEdges() const = 0 : int
@@ -109,12 +94,37 @@ abstract C_0000327135989451974539 #aliceblue;line:blue;line.dotted;text:blue {
 {abstract} +setHyperparameters(const nlohmann::json & hyperparameters) = 0 : void
 {abstract} +show() const = 0 : std::vector<std::string>
 {abstract} +topological_order() = 0 : std::vector<std::string>
-{abstract} #trainModel(const torch::Tensor & weights) = 0 : void
+{abstract} #trainModel(const torch::Tensor & weights, const Smoothing_t smoothing) = 0 : void
 __
+#notes : std::vector<std::string>
+#status : status_t
 #validHyperparameters : std::vector<std::string>
 }
-abstract "bayesnet::Classifier" as C_0002043996622900301644
-abstract C_0002043996622900301644 #aliceblue;line:blue;line.dotted;text:blue {
+class "bayesnet::Metrics" as C_0005895723015084986588
+class C_0005895723015084986588 #aliceblue;line:blue;line.dotted;text:blue {
++Metrics() = default : void
++Metrics(const torch::Tensor & samples, const std::vector<std::string> & features, const std::string & className, const int classNumStates) : void
++Metrics(const std::vector<std::vector<int>> & vsamples, const std::vector<int> & labels, const std::vector<std::string> & features, const std::string & className, const int classNumStates) : void
+..
++SelectKBestWeighted(const torch::Tensor & weights, bool ascending = false, unsigned int k = 0) : std::vector<int>
++SelectKPairs(const torch::Tensor & weights, std::vector<int> & featuresExcluded, bool ascending = false, unsigned int k = 0) : std::vector<std::pair<int,int>>
++conditionalEdge(const torch::Tensor & weights) : torch::Tensor
++conditionalEntropy(const torch::Tensor & firstFeature, const torch::Tensor & secondFeature, const torch::Tensor & labels, const torch::Tensor & weights) : double
++conditionalMutualInformation(const torch::Tensor & firstFeature, const torch::Tensor & secondFeature, const torch::Tensor & labels, const torch::Tensor & weights) : double
+#doCombinations<T>(const std::vector<T> & source) : std::vector<std::pair<T, T> >
++entropy(const torch::Tensor & feature, const torch::Tensor & weights) : double
++getScoresKBest() const : std::vector<double>
++getScoresKPairs() const : std::vector<std::pair<std::pair<int,int>,double>>
++maximumSpanningTree(const std::vector<std::string> & features, const torch::Tensor & weights, const int root) : std::vector<std::pair<int,int>>
++mutualInformation(const torch::Tensor & firstFeature, const torch::Tensor & secondFeature, const torch::Tensor & weights) : double
+#pop_first<T>(std::vector<T> & v) : T
+__
+#className : std::string
+#features : std::vector<std::string>
+#samples : torch::Tensor
+}
+abstract "bayesnet::Classifier" as C_0016351972983202413152
+abstract C_0016351972983202413152 #aliceblue;line:blue;line.dotted;text:blue {
 +Classifier(Network model) : void
 +~Classifier() = default : void
 ..
@@ -123,10 +133,10 @@ abstract C_0002043996622900301644 #aliceblue;line:blue;line.dotted;text:blue {
 {abstract} #buildModel(const torch::Tensor & weights) = 0 : void
 #checkFitParameters() : void
 +dump_cpt() const : std::string
-+fit(torch::Tensor & X, torch::Tensor & y, const std::vector<std::string> & features, const std::string & className, std::map<std::string,std::vector<int>> & states) : Classifier &
-+fit(std::vector<std::vector<int>> & X, std::vector<int> & y, const std::vector<std::string> & features, const std::string & className, std::map<std::string,std::vector<int>> & states) : Classifier &
-+fit(torch::Tensor & dataset, const std::vector<std::string> & features, const std::string & className, std::map<std::string,std::vector<int>> & states) : Classifier &
-+fit(torch::Tensor & dataset, const std::vector<std::string> & features, const std::string & className, std::map<std::string,std::vector<int>> & states, const torch::Tensor & weights) : Classifier &
++fit(torch::Tensor & X, torch::Tensor & y, const std::vector<std::string> & features, const std::string & className, std::map<std::string,std::vector<int>> & states, const Smoothing_t smoothing) : Classifier &
++fit(std::vector<std::vector<int>> & X, std::vector<int> & y, const std::vector<std::string> & features, const std::string & className, std::map<std::string,std::vector<int>> & states, const Smoothing_t smoothing) : Classifier &
++fit(torch::Tensor & dataset, const std::vector<std::string> & features, const std::string & className, std::map<std::string,std::vector<int>> & states, const Smoothing_t smoothing) : Classifier &
++fit(torch::Tensor & dataset, const std::vector<std::string> & features, const std::string & className, std::map<std::string,std::vector<int>> & states, const torch::Tensor & weights, const Smoothing_t smoothing) : Classifier &
 +getClassNumStates() const : int
 +getNotes() const : std::vector<std::string>
 +getNumberOfEdges() const : int
@@ -143,8 +153,9 @@ abstract C_0002043996622900301644 #aliceblue;line:blue;line.dotted;text:blue {
 +setHyperparameters(const nlohmann::json & hyperparameters) : void
 +show() const : std::vector<std::string>
 +topological_order() : std::vector<std::string>
-#trainModel(const torch::Tensor & weights) : void
+#trainModel(const torch::Tensor & weights, const Smoothing_t smoothing) : void
 __
+#CLASSIFIER_NOT_FITTED : const std::string
 #className : std::string
 #dataset : torch::Tensor
 #features : std::vector<std::string>
@@ -153,31 +164,10 @@ __
 #metrics : Metrics
 #model : Network
 #n : unsigned int
-#notes : std::vector<std::string>
 #states : std::map<std::string,std::vector<int>>
-#status : status_t
 }
-class "bayesnet::KDB" as C_0001112865019015250005
-class C_0001112865019015250005 #aliceblue;line:blue;line.dotted;text:blue {
-+KDB(int k, float theta = 0.03) : void
-+~KDB() = default : void
-..
-#buildModel(const torch::Tensor & weights) : void
-+graph(const std::string & name = "KDB") const : std::vector<std::string>
-+setHyperparameters(const nlohmann::json & hyperparameters_) : void
-__
-}
-class "bayesnet::TAN" as C_0001760994424884323017
-class C_0001760994424884323017 #aliceblue;line:blue;line.dotted;text:blue {
-+TAN() : void
-+~TAN() = default : void
-..
-#buildModel(const torch::Tensor & weights) : void
-+graph(const std::string & name = "TAN") const : std::vector<std::string>
-__
-}
-class "bayesnet::Proposal" as C_0002219995589162262979
-class C_0002219995589162262979 #aliceblue;line:blue;line.dotted;text:blue {
+class "bayesnet::Proposal" as C_0017759964713298103839
+class C_0017759964713298103839 #aliceblue;line:blue;line.dotted;text:blue {
 +Proposal(torch::Tensor & pDataset, std::vector<std::string> & features_, std::string & className_) : void
 +~Proposal() : void
 ..
@@ -190,74 +180,140 @@ __
 #discretizers : map<std::string,mdlp::CPPFImdlp *>
 #y : torch::Tensor
 }
-class "bayesnet::TANLd" as C_0001668829096702037834
-class C_0001668829096702037834 #aliceblue;line:blue;line.dotted;text:blue {
-+TANLd() : void
-+~TANLd() = default : void
+class "bayesnet::KDB" as C_0008902920152122000044
+class C_0008902920152122000044 #aliceblue;line:blue;line.dotted;text:blue {
++KDB(int k, float theta = 0.03) : void
++~KDB() = default : void
 ..
-+fit(torch::Tensor & X, torch::Tensor & y, const std::vector<std::string> & features, const std::string & className, std::map<std::string,std::vector<int>> & states) : TANLd &
-+graph(const std::string & name = "TAN") const : std::vector<std::string>
+#add_m_edges(int idx, std::vector<int> & S, torch::Tensor & weights) : void
+#buildModel(const torch::Tensor & weights) : void
++graph(const std::string & name = "KDB") const : std::vector<std::string>
++setHyperparameters(const nlohmann::json & hyperparameters_) : void
+__
+}
+class "bayesnet::KDBLd" as C_0002756018222998454702
+class C_0002756018222998454702 #aliceblue;line:blue;line.dotted;text:blue {
++KDBLd(int k) : void
++~KDBLd() = default : void
+..
++fit(torch::Tensor & X, torch::Tensor & y, const std::vector<std::string> & features, const std::string & className, std::map<std::string,std::vector<int>> & states, const Smoothing_t smoothing) : KDBLd &
++graph(const std::string & name = "KDB") const : std::vector<std::string>
 +predict(torch::Tensor & X) : torch::Tensor
 {static} +version() : std::string
 __
 }
-abstract "bayesnet::FeatureSelect" as C_0001695326193250580823
-abstract C_0001695326193250580823 #aliceblue;line:blue;line.dotted;text:blue {
-+FeatureSelect(const torch::Tensor & samples, const std::vector<std::string> & features, const std::string & className, const int maxFeatures, const int classNumStates, const torch::Tensor & weights) : void
-+~FeatureSelect() : void
-..
-#computeMeritCFS() : double
-#computeSuFeatures(const int a, const int b) : double
-#computeSuLabels() : void
-{abstract} +fit() = 0 : void
-+getFeatures() const : std::vector<int>
-+getScores() const : std::vector<double>
-#initialize() : void
-#symmetricalUncertainty(int a, int b) : double
-__
-#fitted : bool
-#maxFeatures : int
-#selectedFeatures : std::vector<int>
-#selectedScores : std::vector<double>
-#suFeatures : std::map<std::pair<int,int>,double>
-#suLabels : std::vector<double>
-#weights : const torch::Tensor &
-}
-class "bayesnet::CFS" as C_0000011627355691342494
-class C_0000011627355691342494 #aliceblue;line:blue;line.dotted;text:blue {
-+CFS(const torch::Tensor & samples, const std::vector<std::string> & features, const std::string & className, const int maxFeatures, const int classNumStates, const torch::Tensor & weights) : void
-+~CFS() : void
-..
-+fit() : void
-__
-}
-class "bayesnet::FCBF" as C_0000144682015341746929
-class C_0000144682015341746929 #aliceblue;line:blue;line.dotted;text:blue {
-+FCBF(const torch::Tensor & samples, const std::vector<std::string> & features, const std::string & className, const int maxFeatures, const int classNumStates, const torch::Tensor & weights, const double threshold) : void
-+~FCBF() : void
-..
-+fit() : void
-__
-}
-class "bayesnet::IWSS" as C_0000008268514674428553
-class C_0000008268514674428553 #aliceblue;line:blue;line.dotted;text:blue {
-+IWSS(const torch::Tensor & samples, const std::vector<std::string> & features, const std::string & className, const int maxFeatures, const int classNumStates, const torch::Tensor & weights, const double threshold) : void
-+~IWSS() : void
-..
-+fit() : void
-__
-}
-class "bayesnet::SPODE" as C_0000512022813807538451
-class C_0000512022813807538451 #aliceblue;line:blue;line.dotted;text:blue {
+class "bayesnet::SPODE" as C_0004096182510460307610
+class C_0004096182510460307610 #aliceblue;line:blue;line.dotted;text:blue {
 +SPODE(int root) : void
 +~SPODE() = default : void
 ..
 #buildModel(const torch::Tensor & weights) : void
 +graph(const std::string & name = "SPODE") const : std::vector<std::string>
++setHyperparameters(const nlohmann::json & hyperparameters_) : void
 __
 }
-class "bayesnet::Ensemble" as C_0001985241386355360576
-class C_0001985241386355360576 #aliceblue;line:blue;line.dotted;text:blue {
+class "bayesnet::SPODELd" as C_0010957245114062042836
+class C_0010957245114062042836 #aliceblue;line:blue;line.dotted;text:blue {
++SPODELd(int root) : void
++~SPODELd() = default : void
+..
++commonFit(const std::vector<std::string> & features, const std::string & className, std::map<std::string,std::vector<int>> & states, const Smoothing_t smoothing) : SPODELd &
++fit(torch::Tensor & X, torch::Tensor & y, const std::vector<std::string> & features, const std::string & className, std::map<std::string,std::vector<int>> & states, const Smoothing_t smoothing) : SPODELd &
++fit(torch::Tensor & dataset, const std::vector<std::string> & features, const std::string & className, std::map<std::string,std::vector<int>> & states, const Smoothing_t smoothing) : SPODELd &
++graph(const std::string & name = "SPODELd") const : std::vector<std::string>
++predict(torch::Tensor & X) : torch::Tensor
+{static} +version() : std::string
+__
+}
+class "bayesnet::SPnDE" as C_0016268916386101512883
+class C_0016268916386101512883 #aliceblue;line:blue;line.dotted;text:blue {
++SPnDE(std::vector<int> parents) : void
++~SPnDE() = default : void
+..
+#buildModel(const torch::Tensor & weights) : void
++graph(const std::string & name = "SPnDE") const : std::vector<std::string>
+__
+}
+class "bayesnet::TAN" as C_0014087955399074584137
+class C_0014087955399074584137 #aliceblue;line:blue;line.dotted;text:blue {
++TAN() : void
++~TAN() = default : void
+..
+#buildModel(const torch::Tensor & weights) : void
++graph(const std::string & name = "TAN") const : std::vector<std::string>
++setHyperparameters(const nlohmann::json & hyperparameters_) : void
+__
+}
+class "bayesnet::TANLd" as C_0013350632773616302678
+class C_0013350632773616302678 #aliceblue;line:blue;line.dotted;text:blue {
++TANLd() : void
++~TANLd() = default : void
+..
++fit(torch::Tensor & X, torch::Tensor & y, const std::vector<std::string> & features, const std::string & className, std::map<std::string,std::vector<int>> & states, const Smoothing_t smoothing) : TANLd &
++graph(const std::string & name = "TANLd") const : std::vector<std::string>
++predict(torch::Tensor & X) : torch::Tensor
+__
+}
+class "bayesnet::XSp2de" as C_0007640742442325463418
+class C_0007640742442325463418 #aliceblue;line:blue;line.dotted;text:blue {
++XSp2de(int spIndex1, int spIndex2) : void
+..
+#buildModel(const torch::Tensor & weights) : void
++fitx(torch::Tensor & X, torch::Tensor & y, torch::Tensor & weights_, const Smoothing_t smoothing) : void
++getClassNumStates() const : int
++getNFeatures() const : int
++getNumberOfEdges() const : int
++getNumberOfNodes() const : int
++getNumberOfStates() const : int
++graph(const std::string & title) const : std::vector<std::string>
++predict(const std::vector<int> & instance) const : int
++predict(std::vector<std::vector<int>> & test_data) : std::vector<int>
++predict(torch::Tensor & X) : torch::Tensor
++predict_proba(const std::vector<int> & instance) const : std::vector<double>
++predict_proba(std::vector<std::vector<int>> & test_data) : std::vector<std::vector<double>>
++predict_proba(torch::Tensor & X) : torch::Tensor
++score(std::vector<std::vector<int>> & X, std::vector<int> & y) : float
++score(torch::Tensor & X, torch::Tensor & y) : float
++setHyperparameters(const nlohmann::json & hyperparameters_) : void
++to_string() const : std::string
+#trainModel(const torch::Tensor & weights, const bayesnet::Smoothing_t smoothing) : void
+__
+}
+class "bayesnet::XSpode" as C_0015654113248178830206
+class C_0015654113248178830206 #aliceblue;line:blue;line.dotted;text:blue {
++XSpode(int spIndex) : void
+..
+#buildModel(const torch::Tensor & weights) : void
++fitx(torch::Tensor & X, torch::Tensor & y, torch::Tensor & weights_, const Smoothing_t smoothing) : void
++getClassNumStates() const : int
++getNFeatures() const : int
++getNumberOfEdges() const : int
++getNumberOfNodes() const : int
++getNumberOfStates() const : int
++getStates() : std::vector<int> &
++graph(const std::string & title) const : std::vector<std::string>
++normalize(std::vector<double> & v) const : void
++predict(const std::vector<int> & instance) const : int
++predict(std::vector<std::vector<int>> & X) : std::vector<int>
++predict(torch::Tensor & X) : torch::Tensor
++predict_proba(std::vector<std::vector<int>> & X) : std::vector<std::vector<double>>
++predict_proba(torch::Tensor & X) : torch::Tensor
++predict_proba(const std::vector<int> & instance) const : std::vector<double>
++score(torch::Tensor & X, torch::Tensor & y) : float
++score(std::vector<std::vector<int>> & X, std::vector<int> & y) : float
++setHyperparameters(const nlohmann::json & hyperparameters_) : void
++to_string() const : std::string
+#trainModel(const torch::Tensor & weights, const bayesnet::Smoothing_t smoothing) : void
+__
+}
+class "bayesnet::TensorUtils" as C_0010304804115474100819
+class C_0010304804115474100819 #aliceblue;line:blue;line.dotted;text:blue {
+{static} +to_matrix(const torch::Tensor & X) : std::vector<std::vector<int>>
+{static} +to_vector<T>(const torch::Tensor & y) : std::vector<T>
+__
+}
+class "bayesnet::Ensemble" as C_0015881931090842884611
+class C_0015881931090842884611 #aliceblue;line:blue;line.dotted;text:blue {
 +Ensemble(bool predict_voting = true) : void
 +~Ensemble() = default : void
 ..
@@ -280,7 +336,7 @@ class C_0001985241386355360576 #aliceblue;line:blue;line.dotted;text:blue {
 +score(torch::Tensor & X, torch::Tensor & y) : float
 +show() const : std::vector<std::string>
 +topological_order() : std::vector<std::string>
-#trainModel(const torch::Tensor & weights) : void
+#trainModel(const torch::Tensor & weights, const Smoothing_t smoothing) : void
 #voting(torch::Tensor & votes) : torch::Tensor
 __
 #models : std::vector<std::unique_ptr<Classifier>>
@@ -288,41 +344,244 @@ __
 #predict_voting : bool
 #significanceModels : std::vector<double>
 }
-class "bayesnet::(anonymous_45089536)" as C_0001186398587753535158
-class C_0001186398587753535158 #aliceblue;line:blue;line.dotted;text:blue {
+class "bayesnet::A2DE" as C_0001410789567057647859
+class C_0001410789567057647859 #aliceblue;line:blue;line.dotted;text:blue {
++A2DE(bool predict_voting = false) : void
++~A2DE() : void
+..
+#buildModel(const torch::Tensor & weights) : void
++graph(const std::string & title = "A2DE") const : std::vector<std::string>
++setHyperparameters(const nlohmann::json & hyperparameters) : void
+__
+}
+class "bayesnet::AODE" as C_0006288892608974306258
+class C_0006288892608974306258 #aliceblue;line:blue;line.dotted;text:blue {
++AODE(bool predict_voting = false) : void
++~AODE() : void
+..
+#buildModel(const torch::Tensor & weights) : void
++graph(const std::string & title = "AODE") const : std::vector<std::string>
++setHyperparameters(const nlohmann::json & hyperparameters) : void
+__
+}
+class "bayesnet::AODELd" as C_0003898187834670349177
+class C_0003898187834670349177 #aliceblue;line:blue;line.dotted;text:blue {
++AODELd(bool predict_voting = true) : void
++~AODELd() = default : void
+..
+#buildModel(const torch::Tensor & weights) : void
++fit(torch::Tensor & X_, torch::Tensor & y_, const std::vector<std::string> & features_, const std::string & className_, std::map<std::string,std::vector<int>> & states_, const Smoothing_t smoothing) : AODELd &
++graph(const std::string & name = "AODELd") const : std::vector<std::string>
+#trainModel(const torch::Tensor & weights, const Smoothing_t smoothing) : void
+__
+}
+abstract "bayesnet::FeatureSelect" as C_0013562609546004646591
+abstract C_0013562609546004646591 #aliceblue;line:blue;line.dotted;text:blue {
++FeatureSelect(const torch::Tensor & samples, const std::vector<std::string> & features, const std::string & className, const int maxFeatures, const int classNumStates, const torch::Tensor & weights) : void
++~FeatureSelect() : void
+..
+#computeMeritCFS() : double
+#computeSuFeatures(const int a, const int b) : double
+#computeSuLabels() : void
+{abstract} +fit() = 0 : void
++getFeatures() const : std::vector<int>
++getScores() const : std::vector<double>
+#initialize() : void
+#symmetricalUncertainty(int a, int b) : double
+__
+#fitted : bool
+#maxFeatures : int
+#selectedFeatures : std::vector<int>
+#selectedScores : std::vector<double>
+#suFeatures : std::map<std::pair<int,int>,double>
+#suLabels : std::vector<double>
+#weights : const torch::Tensor &
+}
+class "bayesnet::(anonymous_60357672)" as C_0006397015156479549697
+class C_0006397015156479549697 #aliceblue;line:blue;line.dotted;text:blue {
 __
 +CFS : std::string
 +FCBF : std::string
 +IWSS : std::string
 }
-class "bayesnet::(anonymous_45090163)" as C_0000602764946063116717
-class C_0000602764946063116717 #aliceblue;line:blue;line.dotted;text:blue {
+class "bayesnet::(anonymous_60358326)" as C_0013066254331852347304
+class C_0013066254331852347304 #aliceblue;line:blue;line.dotted;text:blue {
 __
 +ASC : std::string
 +DESC : std::string
 +RAND : std::string
 }
-class "bayesnet::BoostAODE" as C_0000358471592399852382
-class C_0000358471592399852382 #aliceblue;line:blue;line.dotted;text:blue {
+class "bayesnet::Boost" as C_0009819322948617116148
+class C_0009819322948617116148 #aliceblue;line:blue;line.dotted;text:blue {
++Boost(bool predict_voting = false) : void
++~Boost() = default : void
+..
+#add_model(std::unique_ptr<Classifier> model, double significance) : void
+#buildModel(const torch::Tensor & weights) : void
+#featureSelection(torch::Tensor & weights_) : std::vector<int>
+#remove_last_model() : void
++setHyperparameters(const nlohmann::json & hyperparameters_) : void
+#update_weights(torch::Tensor & ytrain, torch::Tensor & ypred, torch::Tensor & weights) : std::tuple<torch::Tensor &,double,bool>
+#update_weights_block(int k, torch::Tensor & ytrain, torch::Tensor & weights) : std::tuple<torch::Tensor &,double,bool>
+__
+#X_test : torch::Tensor
+#X_train : torch::Tensor
+#alpha_block : bool
+#bisection : bool
+#block_update : bool
+#convergence : bool
+#convergence_best : bool
+#featureSelector : FeatureSelect *
+#maxTolerance : int
+#order_algorithm : std::string
+#selectFeatures : bool
+#select_features_algorithm : std::string
+#threshold : double
+#y_test : torch::Tensor
+#y_train : torch::Tensor
+}
+class "bayesnet::BoostA2DE" as C_0000272055465257861326
+class C_0000272055465257861326 #aliceblue;line:blue;line.dotted;text:blue {
++BoostA2DE(bool predict_voting = false) : void
++~BoostA2DE() = default : void
+..
++graph(const std::string & title = "BoostA2DE") const : std::vector<std::string>
+#trainModel(const torch::Tensor & weights, const Smoothing_t smoothing) : void
+__
+}
+class "bayesnet::(anonymous_60425028)" as C_0000461144706913711531
+class C_0000461144706913711531 #aliceblue;line:blue;line.dotted;text:blue {
+__
++CFS : std::string
++FCBF : std::string
++IWSS : std::string
+}
+class "bayesnet::(anonymous_60425682)" as C_0014849589915262463453
+class C_0014849589915262463453 #aliceblue;line:blue;line.dotted;text:blue {
+__
++ASC : std::string
++DESC : std::string
++RAND : std::string
+}
+class "bayesnet::BoostAODE" as C_0002867772739198819061
+class C_0002867772739198819061 #aliceblue;line:blue;line.dotted;text:blue {
 +BoostAODE(bool predict_voting = false) : void
 +~BoostAODE() = default : void
 ..
-#buildModel(const torch::Tensor & weights) : void
 +graph(const std::string & title = "BoostAODE") const : std::vector<std::string>
-+setHyperparameters(const nlohmann::json & hyperparameters_) : void
-#trainModel(const torch::Tensor & weights) : void
+#trainModel(const torch::Tensor & weights, const Smoothing_t smoothing) : void
 __
 }
-class "bayesnet::MST" as C_0000131858426172291700
-class C_0000131858426172291700 #aliceblue;line:blue;line.dotted;text:blue {
+class "bayesnet::XBA2DE" as C_0008480973840710001141
+class C_0008480973840710001141 #aliceblue;line:blue;line.dotted;text:blue {
++XBA2DE(bool predict_voting = false) : void
++~XBA2DE() = default : void
+..
++getVersion() : std::string
++graph(const std::string & title = "XBA2DE") const : std::vector<std::string>
+#trainModel(const torch::Tensor & weights, const Smoothing_t smoothing) : void
+__
+}
+class "bayesnet::(anonymous_60414016)" as C_0008746994658440620779
+class C_0008746994658440620779 #aliceblue;line:blue;line.dotted;text:blue {
+__
++CFS : std::string
++FCBF : std::string
++IWSS : std::string
+}
+class "bayesnet::(anonymous_60414670)" as C_0008030559132212449356
+class C_0008030559132212449356 #aliceblue;line:blue;line.dotted;text:blue {
+__
++ASC : std::string
++DESC : std::string
++RAND : std::string
+}
+class "bayesnet::XBAODE" as C_0005198482342493966768
+class C_0005198482342493966768 #aliceblue;line:blue;line.dotted;text:blue {
++XBAODE() : void
+..
++getVersion() : std::string
+#trainModel(const torch::Tensor & weights, const bayesnet::Smoothing_t smoothing) : void
+__
+}
+class "bayesnet::CFS" as C_0000093018845530739957
+class C_0000093018845530739957 #aliceblue;line:blue;line.dotted;text:blue {
++CFS(const torch::Tensor & samples, const std::vector<std::string> & features, const std::string & className, const int maxFeatures, const int classNumStates, const torch::Tensor & weights) : void
++~CFS() : void
+..
++fit() : void
+__
+}
+class "bayesnet::FCBF" as C_0001157456122733975432
+class C_0001157456122733975432 #aliceblue;line:blue;line.dotted;text:blue {
++FCBF(const torch::Tensor & samples, const std::vector<std::string> & features, const std::string & className, const int maxFeatures, const int classNumStates, const torch::Tensor & weights, const double threshold) : void
++~FCBF() : void
+..
++fit() : void
+__
+}
+class "bayesnet::IWSS" as C_0000066148117395428429
+class C_0000066148117395428429 #aliceblue;line:blue;line.dotted;text:blue {
++IWSS(const torch::Tensor & samples, const std::vector<std::string> & features, const std::string & className, const int maxFeatures, const int classNumStates, const torch::Tensor & weights, const double threshold) : void
++~IWSS() : void
+..
++fit() : void
+__
+}
+class "bayesnet::(anonymous_60810808)" as C_0012002108046995621535
+class C_0012002108046995621535 #aliceblue;line:blue;line.dotted;text:blue {
+__
++CFS : std::string
++FCBF : std::string
++IWSS : std::string
+}
+class "bayesnet::(anonymous_60811462)" as C_0004735044229422764240
+class C_0004735044229422764240 #aliceblue;line:blue;line.dotted;text:blue {
+__
++ASC : std::string
++DESC : std::string
++RAND : std::string
+}
+class "bayesnet::(anonymous_60804220)" as C_0007082100550474633839
+class C_0007082100550474633839 #aliceblue;line:blue;line.dotted;text:blue {
+__
++CFS : std::string
++FCBF : std::string
++IWSS : std::string
+}
+class "bayesnet::(anonymous_60804874)" as C_0003669430095936529648
+class C_0003669430095936529648 #aliceblue;line:blue;line.dotted;text:blue {
+__
++ASC : std::string
++DESC : std::string
++RAND : std::string
+}
+class "bayesnet::(anonymous_60809706)" as C_0012336951062058157227
+class C_0012336951062058157227 #aliceblue;line:blue;line.dotted;text:blue {
+__
++CFS : std::string
++FCBF : std::string
++IWSS : std::string
+}
+class "bayesnet::(anonymous_60810360)" as C_0002435892998884329673
+class C_0002435892998884329673 #aliceblue;line:blue;line.dotted;text:blue {
+__
++ASC : std::string
++DESC : std::string
++RAND : std::string
+}
+class "bayesnet::MST" as C_0001054867409378333602
+class C_0001054867409378333602 #aliceblue;line:blue;line.dotted;text:blue {
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 +MST(const std::vector<std::string> & features, const torch::Tensor & weights, const int root) : void
 ..
++insertElement(std::list<int> & variables, int variable) : void
 +maximumSpanningTree() : std::vector<std::pair<int,int>>
++reorder(std::vector<std::pair<float,std::pair<int,int>>> T, int root_original) : std::vector<std::pair<int,int>>
 __
 }
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+class C_0009576333456015187741 #aliceblue;line:blue;line.dotted;text:blue {
 +Graph(int V) : void
 ..
 +addEdge(int u, int v, float wt) : void
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 __
 }
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-{static} +version() : std::string
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-..
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-__
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-class C_0001369655639257755354 #aliceblue;line:blue;line.dotted;text:blue {
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-+fit(torch::Tensor & X, torch::Tensor & y, const std::vector<std::string> & features, const std::string & className, std::map<std::string,std::vector<int>> & states) : SPODELd &
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-+graph(const std::string & name = "SPODE") const : std::vector<std::string>
-+predict(torch::Tensor & X) : torch::Tensor
-{static} +version() : std::string
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-class C_0000487273479333793647 #aliceblue;line:blue;line.dotted;text:blue {
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-..
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-+fit(torch::Tensor & X_, torch::Tensor & y_, const std::vector<std::string> & features_, const std::string & className_, std::map<std::string,std::vector<int>> & states_) : AODELd &
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docs/BoostAODE.md

@@ -5,6 +5,7 @@
 The hyperparameters defined in the algorithm are:
 
 - ***bisection*** (*boolean*): If set to true allows the algorithm to add *k* models at once (as specified in the algorithm) to the ensemble. Default value: *true*.
+- ***bisection_best*** (*boolean*): If set to *true*, the algorithm will take as *priorAccuracy* the best accuracy computed. If set to *false⁺ it will take the last accuracy as *priorAccuracy*. Default value: *false*.
 
 - ***order*** (*{"asc", "desc", "rand"}*): Sets the order (ascending/descending/random) in which dataset variables will be processed to choose the parents of the *SPODEs*. Default value: *"desc"*.
 
@@ -26,4 +27,4 @@ The hyperparameters defined in the algorithm are:
 
 ## Operation
 
-### [Algorithm](./algorithm.md)
+### [Base Algorithm](./algorithm.md)

docs/algorithm.md

@@ -105,8 +105,7 @@
 
             2. $numItemsPack \leftarrow 0$
 
-    10. If
-        $(Vars == \emptyset \lor tolerance>maxTolerance) \; finished \leftarrow True$
+    10. If $(Vars == \emptyset \lor tolerance>maxTolerance) \; finished \leftarrow True$
 
     11. $lastAccuracy \leftarrow max(lastAccuracy, actualAccuracy)$
 

gcovr.cfg

@@ -1,5 +0,0 @@
-filter = bayesnet/
-exclude-directories = build_debug/lib/
-exclude = bayesnet/utils/loguru.*
-print-summary = yes
-sort = uncovered-percent

lib/Files/ArffFiles.cc

@@ -1,168 +0,0 @@
-#include "ArffFiles.h"
-#include <fstream>
-#include <sstream>
-#include <map>
-#include <iostream>
-
-ArffFiles::ArffFiles() = default;
-
-std::vector<std::string> ArffFiles::getLines() const
-{
-    return lines;
-}
-
-unsigned long int ArffFiles::getSize() const
-{
-    return lines.size();
-}
-
-std::vector<std::pair<std::string, std::string>> ArffFiles::getAttributes() const
-{
-    return attributes;
-}
-
-std::string ArffFiles::getClassName() const
-{
-    return className;
-}
-
-std::string ArffFiles::getClassType() const
-{
-    return classType;
-}
-
-std::vector<std::vector<float>>& ArffFiles::getX()
-{
-    return X;
-}
-
-std::vector<int>& ArffFiles::getY()
-{
-    return y;
-}
-
-void ArffFiles::loadCommon(std::string fileName)
-{
-    std::ifstream file(fileName);
-    if (!file.is_open()) {
-        throw std::invalid_argument("Unable to open file");
-    }
-    std::string line;
-    std::string keyword;
-    std::string attribute;
-    std::string type;
-    std::string type_w;
-    while (getline(file, line)) {
-        if (line.empty() || line[0] == '%' || line == "\r" || line == " ") {
-            continue;
-        }
-        if (line.find("@attribute") != std::string::npos || line.find("@ATTRIBUTE") != std::string::npos) {
-            std::stringstream ss(line);
-            ss >> keyword >> attribute;
-            type = "";
-            while (ss >> type_w)
-                type += type_w + " ";
-            attributes.emplace_back(trim(attribute), trim(type));
-            continue;
-        }
-        if (line[0] == '@') {
-            continue;
-        }
-        lines.push_back(line);
-    }
-    file.close();
-    if (attributes.empty())
-        throw std::invalid_argument("No attributes found");
-}
-
-void ArffFiles::load(const std::string& fileName, bool classLast)
-{
-    int labelIndex;
-    loadCommon(fileName);
-    if (classLast) {
-        className = std::get<0>(attributes.back());
-        classType = std::get<1>(attributes.back());
-        attributes.pop_back();
-        labelIndex = static_cast<int>(attributes.size());
-    } else {
-        className = std::get<0>(attributes.front());
-        classType = std::get<1>(attributes.front());
-        attributes.erase(attributes.begin());
-        labelIndex = 0;
-    }
-    generateDataset(labelIndex);
-}
-void ArffFiles::load(const std::string& fileName, const std::string& name)
-{
-    int labelIndex;
-    loadCommon(fileName);
-    bool found = false;
-    for (int i = 0; i < attributes.size(); ++i) {
-        if (attributes[i].first == name) {
-            className = std::get<0>(attributes[i]);
-            classType = std::get<1>(attributes[i]);
-            attributes.erase(attributes.begin() + i);
-            labelIndex = i;
-            found = true;
-            break;
-        }
-    }
-    if (!found) {
-        throw std::invalid_argument("Class name not found");
-    }
-    generateDataset(labelIndex);
-}
-
-void ArffFiles::generateDataset(int labelIndex)
-{
-    X = std::vector<std::vector<float>>(attributes.size(), std::vector<float>(lines.size()));
-    auto yy = std::vector<std::string>(lines.size(), "");
-    auto removeLines = std::vector<int>(); // Lines with missing values
-    for (size_t i = 0; i < lines.size(); i++) {
-        std::stringstream ss(lines[i]);
-        std::string value;
-        int pos = 0;
-        int xIndex = 0;
-        while (getline(ss, value, ',')) {
-            if (pos++ == labelIndex) {
-                yy[i] = value;
-            } else {
-                if (value == "?") {
-                    X[xIndex++][i] = -1;
-                    removeLines.push_back(i);
-                } else
-                    X[xIndex++][i] = stof(value);
-            }
-        }
-    }
-    for (auto i : removeLines) {
-        yy.erase(yy.begin() + i);
-        for (auto& x : X) {
-            x.erase(x.begin() + i);
-        }
-    }
-    y = factorize(yy);
-}
-
-std::string ArffFiles::trim(const std::string& source)
-{
-    std::string s(source);
-    s.erase(0, s.find_first_not_of(" '\n\r\t"));
-    s.erase(s.find_last_not_of(" '\n\r\t") + 1);
-    return s;
-}
-
-std::vector<int> ArffFiles::factorize(const std::vector<std::string>& labels_t)
-{
-    std::vector<int> yy;
-    yy.reserve(labels_t.size());
-    std::map<std::string, int> labelMap;
-    int i = 0;
-    for (const std::string& label : labels_t) {
-        if (labelMap.find(label) == labelMap.end()) {
-            labelMap[label] = i++;
-        }
-        yy.push_back(labelMap[label]);
-    }
-    return yy;
-}

lib/Files/ArffFiles.h

@@ -1,32 +0,0 @@
-#ifndef ARFFFILES_H
-#define ARFFFILES_H
-
-#include <string>
-#include <vector>
-
-class ArffFiles {
-private:
-    std::vector<std::string> lines;
-    std::vector<std::pair<std::string, std::string>> attributes;
-    std::string className;
-    std::string classType;
-    std::vector<std::vector<float>> X;
-    std::vector<int> y;
-    void generateDataset(int);
-    void loadCommon(std::string);
-public:
-    ArffFiles();
-    void load(const std::string&, bool = true);
-    void load(const std::string&, const std::string&);
-    std::vector<std::string> getLines() const;
-    unsigned long int getSize() const;
-    std::string getClassName() const;
-    std::string getClassType() const;
-    static std::string trim(const std::string&);
-    std::vector<std::vector<float>>& getX();
-    std::vector<int>& getY();
-    std::vector<std::pair<std::string, std::string>> getAttributes() const;
-    static std::vector<int> factorize(const std::vector<std::string>& labels_t);
-};
-
-#endif

lib/Files/CMakeLists.txt

@@ -1 +0,0 @@
-add_library(ArffFiles ArffFiles.cc)

sample/CMakeLists.txt

@@ -4,17 +4,19 @@ project(bayesnet_sample)
 
 set(CMAKE_CXX_STANDARD 17)
 
-find_package(Torch REQUIRED)
-find_library(BayesNet NAMES BayesNet.a libBayesNet.a REQUIRED)
+find_package(Torch CONFIG REQUIRED)
+find_package(bayesnet CONFIG REQUIRED)
+find_package(fimdlp CONFIG REQUIRED)
+find_package(folding CONFIG REQUIRED)
+find_package(arff-files CONFIG REQUIRED)
+find_package(nlohman_json CONFIG REQUIRED)
 
-include_directories(
-    lib/Files
-    lib/mdlp
-    lib/json/include
-    /usr/local/include
-)
-
-add_subdirectory(lib/Files)
-add_subdirectory(lib/mdlp)
 add_executable(bayesnet_sample sample.cc) 
-target_link_libraries(bayesnet_sample ArffFiles mdlp "${TORCH_LIBRARIES}" "${BayesNet}")
+target_link_libraries(bayesnet_sample PRIVATE 
+    fimdlp::fimdlp 
+    arff-files::arff-files 
+    "${TORCH_LIBRARIES}" 
+    bayesnet::bayesnet 
+    nlohmann_json::nlohmann_json
+    folding::folding
+)

sample/lib/Files/ArffFiles.cc

@@ -1,174 +0,0 @@
-// ***************************************************************
-// SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez
-// SPDX-FileType: SOURCE
-// SPDX-License-Identifier: MIT
-// ***************************************************************
-
-#include "ArffFiles.h"
-#include <fstream>
-#include <sstream>
-#include <map>
-#include <iostream>
-
-ArffFiles::ArffFiles() = default;
-
-std::vector<std::string> ArffFiles::getLines() const
-{
-    return lines;
-}
-
-unsigned long int ArffFiles::getSize() const
-{
-    return lines.size();
-}
-
-std::vector<std::pair<std::string, std::string>> ArffFiles::getAttributes() const
-{
-    return attributes;
-}
-
-std::string ArffFiles::getClassName() const
-{
-    return className;
-}
-
-std::string ArffFiles::getClassType() const
-{
-    return classType;
-}
-
-std::vector<std::vector<float>>& ArffFiles::getX()
-{
-    return X;
-}
-
-std::vector<int>& ArffFiles::getY()
-{
-    return y;
-}
-
-void ArffFiles::loadCommon(std::string fileName)
-{
-    std::ifstream file(fileName);
-    if (!file.is_open()) {
-        throw std::invalid_argument("Unable to open file");
-    }
-    std::string line;
-    std::string keyword;
-    std::string attribute;
-    std::string type;
-    std::string type_w;
-    while (getline(file, line)) {
-        if (line.empty() || line[0] == '%' || line == "\r" || line == " ") {
-            continue;
-        }
-        if (line.find("@attribute") != std::string::npos || line.find("@ATTRIBUTE") != std::string::npos) {
-            std::stringstream ss(line);
-            ss >> keyword >> attribute;
-            type = "";
-            while (ss >> type_w)
-                type += type_w + " ";
-            attributes.emplace_back(trim(attribute), trim(type));
-            continue;
-        }
-        if (line[0] == '@') {
-            continue;
-        }
-        lines.push_back(line);
-    }
-    file.close();
-    if (attributes.empty())
-        throw std::invalid_argument("No attributes found");
-}
-
-void ArffFiles::load(const std::string& fileName, bool classLast)
-{
-    int labelIndex;
-    loadCommon(fileName);
-    if (classLast) {
-        className = std::get<0>(attributes.back());
-        classType = std::get<1>(attributes.back());
-        attributes.pop_back();
-        labelIndex = static_cast<int>(attributes.size());
-    } else {
-        className = std::get<0>(attributes.front());
-        classType = std::get<1>(attributes.front());
-        attributes.erase(attributes.begin());
-        labelIndex = 0;
-    }
-    generateDataset(labelIndex);
-}
-void ArffFiles::load(const std::string& fileName, const std::string& name)
-{
-    int labelIndex;
-    loadCommon(fileName);
-    bool found = false;
-    for (int i = 0; i < attributes.size(); ++i) {
-        if (attributes[i].first == name) {
-            className = std::get<0>(attributes[i]);
-            classType = std::get<1>(attributes[i]);
-            attributes.erase(attributes.begin() + i);
-            labelIndex = i;
-            found = true;
-            break;
-        }
-    }
-    if (!found) {
-        throw std::invalid_argument("Class name not found");
-    }
-    generateDataset(labelIndex);
-}
-
-void ArffFiles::generateDataset(int labelIndex)
-{
-    X = std::vector<std::vector<float>>(attributes.size(), std::vector<float>(lines.size()));
-    auto yy = std::vector<std::string>(lines.size(), "");
-    auto removeLines = std::vector<int>(); // Lines with missing values
-    for (size_t i = 0; i < lines.size(); i++) {
-        std::stringstream ss(lines[i]);
-        std::string value;
-        int pos = 0;
-        int xIndex = 0;
-        while (getline(ss, value, ',')) {
-            if (pos++ == labelIndex) {
-                yy[i] = value;
-            } else {
-                if (value == "?") {
-                    X[xIndex++][i] = -1;
-                    removeLines.push_back(i);
-                } else
-                    X[xIndex++][i] = stof(value);
-            }
-        }
-    }
-    for (auto i : removeLines) {
-        yy.erase(yy.begin() + i);
-        for (auto& x : X) {
-            x.erase(x.begin() + i);
-        }
-    }
-    y = factorize(yy);
-}
-
-std::string ArffFiles::trim(const std::string& source)
-{
-    std::string s(source);
-    s.erase(0, s.find_first_not_of(" '\n\r\t"));
-    s.erase(s.find_last_not_of(" '\n\r\t") + 1);
-    return s;
-}
-
-std::vector<int> ArffFiles::factorize(const std::vector<std::string>& labels_t)
-{
-    std::vector<int> yy;
-    yy.reserve(labels_t.size());
-    std::map<std::string, int> labelMap;
-    int i = 0;
-    for (const std::string& label : labels_t) {
-        if (labelMap.find(label) == labelMap.end()) {
-            labelMap[label] = i++;
-        }
-        yy.push_back(labelMap[label]);
-    }
-    return yy;
-}

sample/lib/Files/ArffFiles.h

@@ -1,38 +0,0 @@
-// ***************************************************************
-// SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez
-// SPDX-FileType: SOURCE
-// SPDX-License-Identifier: MIT
-// ***************************************************************
-
-#ifndef ARFFFILES_H
-#define ARFFFILES_H
-
-#include <string>
-#include <vector>
-
-class ArffFiles {
-private:
-    std::vector<std::string> lines;
-    std::vector<std::pair<std::string, std::string>> attributes;
-    std::string className;
-    std::string classType;
-    std::vector<std::vector<float>> X;
-    std::vector<int> y;
-    void generateDataset(int);
-    void loadCommon(std::string);
-public:
-    ArffFiles();
-    void load(const std::string&, bool = true);
-    void load(const std::string&, const std::string&);
-    std::vector<std::string> getLines() const;
-    unsigned long int getSize() const;
-    std::string getClassName() const;
-    std::string getClassType() const;
-    static std::string trim(const std::string&);
-    std::vector<std::vector<float>>& getX();
-    std::vector<int>& getY();
-    std::vector<std::pair<std::string, std::string>> getAttributes() const;
-    static std::vector<int> factorize(const std::vector<std::string>& labels_t);
-};
-
-#endif

sample/lib/Files/CMakeLists.txt

@@ -1 +0,0 @@
-add_library(ArffFiles ArffFiles.cc)

sample/lib/json/include/nlohmann/adl_serializer.hpp

@@ -1,55 +0,0 @@
-//     __ _____ _____ _____
-//  __|  |   __|     |   | |  JSON for Modern C++
-// |  |  |__   |  |  | | | |  version 3.11.3
-// |_____|_____|_____|_|___|  https://github.com/nlohmann/json
-//
-// SPDX-FileCopyrightText: 2013-2023 Niels Lohmann <https://nlohmann.me>
-// SPDX-License-Identifier: MIT
-
-#pragma once
-
-#include <utility>
-
-#include <nlohmann/detail/abi_macros.hpp>
-#include <nlohmann/detail/conversions/from_json.hpp>
-#include <nlohmann/detail/conversions/to_json.hpp>
-#include <nlohmann/detail/meta/identity_tag.hpp>
-
-NLOHMANN_JSON_NAMESPACE_BEGIN
-
-/// @sa https://json.nlohmann.me/api/adl_serializer/
-template<typename ValueType, typename>
-struct adl_serializer
-{
-    /// @brief convert a JSON value to any value type
-    /// @sa https://json.nlohmann.me/api/adl_serializer/from_json/
-    template<typename BasicJsonType, typename TargetType = ValueType>
-    static auto from_json(BasicJsonType && j, TargetType& val) noexcept(
-        noexcept(::nlohmann::from_json(std::forward<BasicJsonType>(j), val)))
-    -> decltype(::nlohmann::from_json(std::forward<BasicJsonType>(j), val), void())
-    {
-        ::nlohmann::from_json(std::forward<BasicJsonType>(j), val);
-    }
-
-    /// @brief convert a JSON value to any value type
-    /// @sa https://json.nlohmann.me/api/adl_serializer/from_json/
-    template<typename BasicJsonType, typename TargetType = ValueType>
-    static auto from_json(BasicJsonType && j) noexcept(
-    noexcept(::nlohmann::from_json(std::forward<BasicJsonType>(j), detail::identity_tag<TargetType> {})))
-    -> decltype(::nlohmann::from_json(std::forward<BasicJsonType>(j), detail::identity_tag<TargetType> {}))
-    {
-        return ::nlohmann::from_json(std::forward<BasicJsonType>(j), detail::identity_tag<TargetType> {});
-    }
-
-    /// @brief convert any value type to a JSON value
-    /// @sa https://json.nlohmann.me/api/adl_serializer/to_json/
-    template<typename BasicJsonType, typename TargetType = ValueType>
-    static auto to_json(BasicJsonType& j, TargetType && val) noexcept(
-        noexcept(::nlohmann::to_json(j, std::forward<TargetType>(val))))
-    -> decltype(::nlohmann::to_json(j, std::forward<TargetType>(val)), void())
-    {
-        ::nlohmann::to_json(j, std::forward<TargetType>(val));
-    }
-};
-
-NLOHMANN_JSON_NAMESPACE_END

sample/lib/json/include/nlohmann/byte_container_with_subtype.hpp

@@ -1,103 +0,0 @@
-//     __ _____ _____ _____
-//  __|  |   __|     |   | |  JSON for Modern C++
-// |  |  |__   |  |  | | | |  version 3.11.3
-// |_____|_____|_____|_|___|  https://github.com/nlohmann/json
-//
-// SPDX-FileCopyrightText: 2013-2023 Niels Lohmann <https://nlohmann.me>
-// SPDX-License-Identifier: MIT
-
-#pragma once
-
-#include <cstdint> // uint8_t, uint64_t
-#include <tuple> // tie
-#include <utility> // move
-
-#include <nlohmann/detail/abi_macros.hpp>
-
-NLOHMANN_JSON_NAMESPACE_BEGIN
-
-/// @brief an internal type for a backed binary type
-/// @sa https://json.nlohmann.me/api/byte_container_with_subtype/
-template<typename BinaryType>
-class byte_container_with_subtype : public BinaryType
-{
-  public:
-    using container_type = BinaryType;
-    using subtype_type = std::uint64_t;
-
-    /// @sa https://json.nlohmann.me/api/byte_container_with_subtype/byte_container_with_subtype/
-    byte_container_with_subtype() noexcept(noexcept(container_type()))
-        : container_type()
-    {}
-
-    /// @sa https://json.nlohmann.me/api/byte_container_with_subtype/byte_container_with_subtype/
-    byte_container_with_subtype(const container_type& b) noexcept(noexcept(container_type(b)))
-        : container_type(b)
-    {}
-
-    /// @sa https://json.nlohmann.me/api/byte_container_with_subtype/byte_container_with_subtype/
-    byte_container_with_subtype(container_type&& b) noexcept(noexcept(container_type(std::move(b))))
-        : container_type(std::move(b))
-    {}
-
-    /// @sa https://json.nlohmann.me/api/byte_container_with_subtype/byte_container_with_subtype/
-    byte_container_with_subtype(const container_type& b, subtype_type subtype_) noexcept(noexcept(container_type(b)))
-        : container_type(b)
-        , m_subtype(subtype_)
-        , m_has_subtype(true)
-    {}
-
-    /// @sa https://json.nlohmann.me/api/byte_container_with_subtype/byte_container_with_subtype/
-    byte_container_with_subtype(container_type&& b, subtype_type subtype_) noexcept(noexcept(container_type(std::move(b))))
-        : container_type(std::move(b))
-        , m_subtype(subtype_)
-        , m_has_subtype(true)
-    {}
-
-    bool operator==(const byte_container_with_subtype& rhs) const
-    {
-        return std::tie(static_cast<const BinaryType&>(*this), m_subtype, m_has_subtype) ==
-               std::tie(static_cast<const BinaryType&>(rhs), rhs.m_subtype, rhs.m_has_subtype);
-    }
-
-    bool operator!=(const byte_container_with_subtype& rhs) const
-    {
-        return !(rhs == *this);
-    }
-
-    /// @brief sets the binary subtype
-    /// @sa https://json.nlohmann.me/api/byte_container_with_subtype/set_subtype/
-    void set_subtype(subtype_type subtype_) noexcept
-    {
-        m_subtype = subtype_;
-        m_has_subtype = true;
-    }
-
-    /// @brief return the binary subtype
-    /// @sa https://json.nlohmann.me/api/byte_container_with_subtype/subtype/
-    constexpr subtype_type subtype() const noexcept
-    {
-        return m_has_subtype ? m_subtype : static_cast<subtype_type>(-1);
-    }
-
-    /// @brief return whether the value has a subtype
-    /// @sa https://json.nlohmann.me/api/byte_container_with_subtype/has_subtype/
-    constexpr bool has_subtype() const noexcept
-    {
-        return m_has_subtype;
-    }
-
-    /// @brief clears the binary subtype
-    /// @sa https://json.nlohmann.me/api/byte_container_with_subtype/clear_subtype/
-    void clear_subtype() noexcept
-    {
-        m_subtype = 0;
-        m_has_subtype = false;
-    }
-
-  private:
-    subtype_type m_subtype = 0;
-    bool m_has_subtype = false;
-};
-
-NLOHMANN_JSON_NAMESPACE_END

sample/lib/json/include/nlohmann/detail/abi_macros.hpp

@@ -1,100 +0,0 @@
-//     __ _____ _____ _____
-//  __|  |   __|     |   | |  JSON for Modern C++
-// |  |  |__   |  |  | | | |  version 3.11.3
-// |_____|_____|_____|_|___|  https://github.com/nlohmann/json
-//
-// SPDX-FileCopyrightText: 2013-2023 Niels Lohmann <https://nlohmann.me>
-// SPDX-License-Identifier: MIT
-
-#pragma once
-
-// This file contains all macro definitions affecting or depending on the ABI
-
-#ifndef JSON_SKIP_LIBRARY_VERSION_CHECK
-    #if defined(NLOHMANN_JSON_VERSION_MAJOR) && defined(NLOHMANN_JSON_VERSION_MINOR) && defined(NLOHMANN_JSON_VERSION_PATCH)
-        #if NLOHMANN_JSON_VERSION_MAJOR != 3 || NLOHMANN_JSON_VERSION_MINOR != 11 || NLOHMANN_JSON_VERSION_PATCH != 3
-            #warning "Already included a different version of the library!"
-        #endif
-    #endif
-#endif
-
-#define NLOHMANN_JSON_VERSION_MAJOR 3   // NOLINT(modernize-macro-to-enum)
-#define NLOHMANN_JSON_VERSION_MINOR 11  // NOLINT(modernize-macro-to-enum)
-#define NLOHMANN_JSON_VERSION_PATCH 3   // NOLINT(modernize-macro-to-enum)
-
-#ifndef JSON_DIAGNOSTICS
-    #define JSON_DIAGNOSTICS 0
-#endif
-
-#ifndef JSON_USE_LEGACY_DISCARDED_VALUE_COMPARISON
-    #define JSON_USE_LEGACY_DISCARDED_VALUE_COMPARISON 0
-#endif
-
-#if JSON_DIAGNOSTICS
-    #define NLOHMANN_JSON_ABI_TAG_DIAGNOSTICS _diag
-#else
-    #define NLOHMANN_JSON_ABI_TAG_DIAGNOSTICS
-#endif
-
-#if JSON_USE_LEGACY_DISCARDED_VALUE_COMPARISON
-    #define NLOHMANN_JSON_ABI_TAG_LEGACY_DISCARDED_VALUE_COMPARISON _ldvcmp
-#else
-    #define NLOHMANN_JSON_ABI_TAG_LEGACY_DISCARDED_VALUE_COMPARISON
-#endif
-
-#ifndef NLOHMANN_JSON_NAMESPACE_NO_VERSION
-    #define NLOHMANN_JSON_NAMESPACE_NO_VERSION 0
-#endif
-
-// Construct the namespace ABI tags component
-#define NLOHMANN_JSON_ABI_TAGS_CONCAT_EX(a, b) json_abi ## a ## b
-#define NLOHMANN_JSON_ABI_TAGS_CONCAT(a, b) \
-    NLOHMANN_JSON_ABI_TAGS_CONCAT_EX(a, b)
-
-#define NLOHMANN_JSON_ABI_TAGS                                       \
-    NLOHMANN_JSON_ABI_TAGS_CONCAT(                                   \
-            NLOHMANN_JSON_ABI_TAG_DIAGNOSTICS,                       \
-            NLOHMANN_JSON_ABI_TAG_LEGACY_DISCARDED_VALUE_COMPARISON)
-
-// Construct the namespace version component
-#define NLOHMANN_JSON_NAMESPACE_VERSION_CONCAT_EX(major, minor, patch) \
-    _v ## major ## _ ## minor ## _ ## patch
-#define NLOHMANN_JSON_NAMESPACE_VERSION_CONCAT(major, minor, patch) \
-    NLOHMANN_JSON_NAMESPACE_VERSION_CONCAT_EX(major, minor, patch)
-
-#if NLOHMANN_JSON_NAMESPACE_NO_VERSION
-#define NLOHMANN_JSON_NAMESPACE_VERSION
-#else
-#define NLOHMANN_JSON_NAMESPACE_VERSION                                 \
-    NLOHMANN_JSON_NAMESPACE_VERSION_CONCAT(NLOHMANN_JSON_VERSION_MAJOR, \
-                                           NLOHMANN_JSON_VERSION_MINOR, \
-                                           NLOHMANN_JSON_VERSION_PATCH)
-#endif
-
-// Combine namespace components
-#define NLOHMANN_JSON_NAMESPACE_CONCAT_EX(a, b) a ## b
-#define NLOHMANN_JSON_NAMESPACE_CONCAT(a, b) \
-    NLOHMANN_JSON_NAMESPACE_CONCAT_EX(a, b)
-
-#ifndef NLOHMANN_JSON_NAMESPACE
-#define NLOHMANN_JSON_NAMESPACE               \
-    nlohmann::NLOHMANN_JSON_NAMESPACE_CONCAT( \
-            NLOHMANN_JSON_ABI_TAGS,           \
-            NLOHMANN_JSON_NAMESPACE_VERSION)
-#endif
-
-#ifndef NLOHMANN_JSON_NAMESPACE_BEGIN
-#define NLOHMANN_JSON_NAMESPACE_BEGIN                \
-    namespace nlohmann                               \
-    {                                                \
-    inline namespace NLOHMANN_JSON_NAMESPACE_CONCAT( \
-                NLOHMANN_JSON_ABI_TAGS,              \
-                NLOHMANN_JSON_NAMESPACE_VERSION)     \
-    {
-#endif
-
-#ifndef NLOHMANN_JSON_NAMESPACE_END
-#define NLOHMANN_JSON_NAMESPACE_END                                     \
-    }  /* namespace (inline namespace) NOLINT(readability/namespace) */ \
-    }  // namespace nlohmann
-#endif

sample/lib/json/include/nlohmann/detail/conversions/from_json.hpp

@@ -1,497 +0,0 @@
-//     __ _____ _____ _____
-//  __|  |   __|     |   | |  JSON for Modern C++
-// |  |  |__   |  |  | | | |  version 3.11.3
-// |_____|_____|_____|_|___|  https://github.com/nlohmann/json
-//
-// SPDX-FileCopyrightText: 2013-2023 Niels Lohmann <https://nlohmann.me>
-// SPDX-License-Identifier: MIT
-
-#pragma once
-
-#include <algorithm> // transform
-#include <array> // array
-#include <forward_list> // forward_list
-#include <iterator> // inserter, front_inserter, end
-#include <map> // map
-#include <string> // string
-#include <tuple> // tuple, make_tuple
-#include <type_traits> // is_arithmetic, is_same, is_enum, underlying_type, is_convertible
-#include <unordered_map> // unordered_map
-#include <utility> // pair, declval
-#include <valarray> // valarray
-
-#include <nlohmann/detail/exceptions.hpp>
-#include <nlohmann/detail/macro_scope.hpp>
-#include <nlohmann/detail/meta/cpp_future.hpp>
-#include <nlohmann/detail/meta/identity_tag.hpp>
-#include <nlohmann/detail/meta/std_fs.hpp>
-#include <nlohmann/detail/meta/type_traits.hpp>
-#include <nlohmann/detail/string_concat.hpp>
-#include <nlohmann/detail/value_t.hpp>
-
-NLOHMANN_JSON_NAMESPACE_BEGIN
-namespace detail
-{
-
-template<typename BasicJsonType>
-inline void from_json(const BasicJsonType& j, typename std::nullptr_t& n)
-{
-    if (JSON_HEDLEY_UNLIKELY(!j.is_null()))
-    {
-        JSON_THROW(type_error::create(302, concat("type must be null, but is ", j.type_name()), &j));
-    }
-    n = nullptr;
-}
-
-// overloads for basic_json template parameters
-template < typename BasicJsonType, typename ArithmeticType,
-           enable_if_t < std::is_arithmetic<ArithmeticType>::value&&
-                         !std::is_same<ArithmeticType, typename BasicJsonType::boolean_t>::value,
-                         int > = 0 >
-void get_arithmetic_value(const BasicJsonType& j, ArithmeticType& val)
-{
-    switch (static_cast<value_t>(j))
-    {
-        case value_t::number_unsigned:
-        {
-            val = static_cast<ArithmeticType>(*j.template get_ptr<const typename BasicJsonType::number_unsigned_t*>());
-            break;
-        }
-        case value_t::number_integer:
-        {
-            val = static_cast<ArithmeticType>(*j.template get_ptr<const typename BasicJsonType::number_integer_t*>());
-            break;
-        }
-        case value_t::number_float:
-        {
-            val = static_cast<ArithmeticType>(*j.template get_ptr<const typename BasicJsonType::number_float_t*>());
-            break;
-        }
-
-        case value_t::null:
-        case value_t::object:
-        case value_t::array:
-        case value_t::string:
-        case value_t::boolean:
-        case value_t::binary:
-        case value_t::discarded:
-        default:
-            JSON_THROW(type_error::create(302, concat("type must be number, but is ", j.type_name()), &j));
-    }
-}
-
-template<typename BasicJsonType>
-inline void from_json(const BasicJsonType& j, typename BasicJsonType::boolean_t& b)
-{
-    if (JSON_HEDLEY_UNLIKELY(!j.is_boolean()))
-    {
-        JSON_THROW(type_error::create(302, concat("type must be boolean, but is ", j.type_name()), &j));
-    }
-    b = *j.template get_ptr<const typename BasicJsonType::boolean_t*>();
-}
-
-template<typename BasicJsonType>
-inline void from_json(const BasicJsonType& j, typename BasicJsonType::string_t& s)
-{
-    if (JSON_HEDLEY_UNLIKELY(!j.is_string()))
-    {
-        JSON_THROW(type_error::create(302, concat("type must be string, but is ", j.type_name()), &j));
-    }
-    s = *j.template get_ptr<const typename BasicJsonType::string_t*>();
-}
-
-template <
-    typename BasicJsonType, typename StringType,
-    enable_if_t <
-        std::is_assignable<StringType&, const typename BasicJsonType::string_t>::value
-        && is_detected_exact<typename BasicJsonType::string_t::value_type, value_type_t, StringType>::value
-        && !std::is_same<typename BasicJsonType::string_t, StringType>::value
-        && !is_json_ref<StringType>::value, int > = 0 >
-inline void from_json(const BasicJsonType& j, StringType& s)
-{
-    if (JSON_HEDLEY_UNLIKELY(!j.is_string()))
-    {
-        JSON_THROW(type_error::create(302, concat("type must be string, but is ", j.type_name()), &j));
-    }
-
-    s = *j.template get_ptr<const typename BasicJsonType::string_t*>();
-}
-
-template<typename BasicJsonType>
-inline void from_json(const BasicJsonType& j, typename BasicJsonType::number_float_t& val)
-{
-    get_arithmetic_value(j, val);
-}
-
-template<typename BasicJsonType>
-inline void from_json(const BasicJsonType& j, typename BasicJsonType::number_unsigned_t& val)
-{
-    get_arithmetic_value(j, val);
-}
-
-template<typename BasicJsonType>
-inline void from_json(const BasicJsonType& j, typename BasicJsonType::number_integer_t& val)
-{
-    get_arithmetic_value(j, val);
-}
-
-#if !JSON_DISABLE_ENUM_SERIALIZATION
-template<typename BasicJsonType, typename EnumType,
-         enable_if_t<std::is_enum<EnumType>::value, int> = 0>
-inline void from_json(const BasicJsonType& j, EnumType& e)
-{
-    typename std::underlying_type<EnumType>::type val;
-    get_arithmetic_value(j, val);
-    e = static_cast<EnumType>(val);
-}
-#endif  // JSON_DISABLE_ENUM_SERIALIZATION
-
-// forward_list doesn't have an insert method
-template<typename BasicJsonType, typename T, typename Allocator,
-         enable_if_t<is_getable<BasicJsonType, T>::value, int> = 0>
-inline void from_json(const BasicJsonType& j, std::forward_list<T, Allocator>& l)
-{
-    if (JSON_HEDLEY_UNLIKELY(!j.is_array()))
-    {
-        JSON_THROW(type_error::create(302, concat("type must be array, but is ", j.type_name()), &j));
-    }
-    l.clear();
-    std::transform(j.rbegin(), j.rend(),
-                   std::front_inserter(l), [](const BasicJsonType & i)
-    {
-        return i.template get<T>();
-    });
-}
-
-// valarray doesn't have an insert method
-template<typename BasicJsonType, typename T,
-         enable_if_t<is_getable<BasicJsonType, T>::value, int> = 0>
-inline void from_json(const BasicJsonType& j, std::valarray<T>& l)
-{
-    if (JSON_HEDLEY_UNLIKELY(!j.is_array()))
-    {
-        JSON_THROW(type_error::create(302, concat("type must be array, but is ", j.type_name()), &j));
-    }
-    l.resize(j.size());
-    std::transform(j.begin(), j.end(), std::begin(l),
-                   [](const BasicJsonType & elem)
-    {
-        return elem.template get<T>();
-    });
-}
-
-template<typename BasicJsonType, typename T, std::size_t N>
-auto from_json(const BasicJsonType& j, T (&arr)[N])  // NOLINT(cppcoreguidelines-avoid-c-arrays,hicpp-avoid-c-arrays,modernize-avoid-c-arrays)
--> decltype(j.template get<T>(), void())
-{
-    for (std::size_t i = 0; i < N; ++i)
-    {
-        arr[i] = j.at(i).template get<T>();
-    }
-}
-
-template<typename BasicJsonType>
-inline void from_json_array_impl(const BasicJsonType& j, typename BasicJsonType::array_t& arr, priority_tag<3> /*unused*/)
-{
-    arr = *j.template get_ptr<const typename BasicJsonType::array_t*>();
-}
-
-template<typename BasicJsonType, typename T, std::size_t N>
-auto from_json_array_impl(const BasicJsonType& j, std::array<T, N>& arr,
-                          priority_tag<2> /*unused*/)
--> decltype(j.template get<T>(), void())
-{
-    for (std::size_t i = 0; i < N; ++i)
-    {
-        arr[i] = j.at(i).template get<T>();
-    }
-}
-
-template<typename BasicJsonType, typename ConstructibleArrayType,
-         enable_if_t<
-             std::is_assignable<ConstructibleArrayType&, ConstructibleArrayType>::value,
-             int> = 0>
-auto from_json_array_impl(const BasicJsonType& j, ConstructibleArrayType& arr, priority_tag<1> /*unused*/)
--> decltype(
-    arr.reserve(std::declval<typename ConstructibleArrayType::size_type>()),
-    j.template get<typename ConstructibleArrayType::value_type>(),
-    void())
-{
-    using std::end;
-
-    ConstructibleArrayType ret;
-    ret.reserve(j.size());
-    std::transform(j.begin(), j.end(),
-                   std::inserter(ret, end(ret)), [](const BasicJsonType & i)
-    {
-        // get<BasicJsonType>() returns *this, this won't call a from_json
-        // method when value_type is BasicJsonType
-        return i.template get<typename ConstructibleArrayType::value_type>();
-    });
-    arr = std::move(ret);
-}
-
-template<typename BasicJsonType, typename ConstructibleArrayType,
-         enable_if_t<
-             std::is_assignable<ConstructibleArrayType&, ConstructibleArrayType>::value,
-             int> = 0>
-inline void from_json_array_impl(const BasicJsonType& j, ConstructibleArrayType& arr,
-                                 priority_tag<0> /*unused*/)
-{
-    using std::end;
-
-    ConstructibleArrayType ret;
-    std::transform(
-        j.begin(), j.end(), std::inserter(ret, end(ret)),
-        [](const BasicJsonType & i)
-    {
-        // get<BasicJsonType>() returns *this, this won't call a from_json
-        // method when value_type is BasicJsonType
-        return i.template get<typename ConstructibleArrayType::value_type>();
-    });
-    arr = std::move(ret);
-}
-
-template < typename BasicJsonType, typename ConstructibleArrayType,
-           enable_if_t <
-               is_constructible_array_type<BasicJsonType, ConstructibleArrayType>::value&&
-               !is_constructible_object_type<BasicJsonType, ConstructibleArrayType>::value&&
-               !is_constructible_string_type<BasicJsonType, ConstructibleArrayType>::value&&
-               !std::is_same<ConstructibleArrayType, typename BasicJsonType::binary_t>::value&&
-               !is_basic_json<ConstructibleArrayType>::value,
-               int > = 0 >
-auto from_json(const BasicJsonType& j, ConstructibleArrayType& arr)
--> decltype(from_json_array_impl(j, arr, priority_tag<3> {}),
-j.template get<typename ConstructibleArrayType::value_type>(),
-void())
-{
-    if (JSON_HEDLEY_UNLIKELY(!j.is_array()))
-    {
-        JSON_THROW(type_error::create(302, concat("type must be array, but is ", j.type_name()), &j));
-    }
-
-    from_json_array_impl(j, arr, priority_tag<3> {});
-}
-
-template < typename BasicJsonType, typename T, std::size_t... Idx >
-std::array<T, sizeof...(Idx)> from_json_inplace_array_impl(BasicJsonType&& j,
-        identity_tag<std::array<T, sizeof...(Idx)>> /*unused*/, index_sequence<Idx...> /*unused*/)
-{
-    return { { std::forward<BasicJsonType>(j).at(Idx).template get<T>()... } };
-}
-
-template < typename BasicJsonType, typename T, std::size_t N >
-auto from_json(BasicJsonType&& j, identity_tag<std::array<T, N>> tag)
--> decltype(from_json_inplace_array_impl(std::forward<BasicJsonType>(j), tag, make_index_sequence<N> {}))
-{
-    if (JSON_HEDLEY_UNLIKELY(!j.is_array()))
-    {
-        JSON_THROW(type_error::create(302, concat("type must be array, but is ", j.type_name()), &j));
-    }
-
-    return from_json_inplace_array_impl(std::forward<BasicJsonType>(j), tag, make_index_sequence<N> {});
-}
-
-template<typename BasicJsonType>
-inline void from_json(const BasicJsonType& j, typename BasicJsonType::binary_t& bin)
-{
-    if (JSON_HEDLEY_UNLIKELY(!j.is_binary()))
-    {
-        JSON_THROW(type_error::create(302, concat("type must be binary, but is ", j.type_name()), &j));
-    }
-
-    bin = *j.template get_ptr<const typename BasicJsonType::binary_t*>();
-}
-
-template<typename BasicJsonType, typename ConstructibleObjectType,
-         enable_if_t<is_constructible_object_type<BasicJsonType, ConstructibleObjectType>::value, int> = 0>
-inline void from_json(const BasicJsonType& j, ConstructibleObjectType& obj)
-{
-    if (JSON_HEDLEY_UNLIKELY(!j.is_object()))
-    {
-        JSON_THROW(type_error::create(302, concat("type must be object, but is ", j.type_name()), &j));
-    }
-
-    ConstructibleObjectType ret;
-    const auto* inner_object = j.template get_ptr<const typename BasicJsonType::object_t*>();
-    using value_type = typename ConstructibleObjectType::value_type;
-    std::transform(
-        inner_object->begin(), inner_object->end(),
-        std::inserter(ret, ret.begin()),
-        [](typename BasicJsonType::object_t::value_type const & p)
-    {
-        return value_type(p.first, p.second.template get<typename ConstructibleObjectType::mapped_type>());
-    });
-    obj = std::move(ret);
-}
-
-// overload for arithmetic types, not chosen for basic_json template arguments
-// (BooleanType, etc..); note: Is it really necessary to provide explicit
-// overloads for boolean_t etc. in case of a custom BooleanType which is not
-// an arithmetic type?
-template < typename BasicJsonType, typename ArithmeticType,
-           enable_if_t <
-               std::is_arithmetic<ArithmeticType>::value&&
-               !std::is_same<ArithmeticType, typename BasicJsonType::number_unsigned_t>::value&&
-               !std::is_same<ArithmeticType, typename BasicJsonType::number_integer_t>::value&&
-               !std::is_same<ArithmeticType, typename BasicJsonType::number_float_t>::value&&
-               !std::is_same<ArithmeticType, typename BasicJsonType::boolean_t>::value,
-               int > = 0 >
-inline void from_json(const BasicJsonType& j, ArithmeticType& val)
-{
-    switch (static_cast<value_t>(j))
-    {
-        case value_t::number_unsigned:
-        {
-            val = static_cast<ArithmeticType>(*j.template get_ptr<const typename BasicJsonType::number_unsigned_t*>());
-            break;
-        }
-        case value_t::number_integer:
-        {
-            val = static_cast<ArithmeticType>(*j.template get_ptr<const typename BasicJsonType::number_integer_t*>());
-            break;
-        }
-        case value_t::number_float:
-        {
-            val = static_cast<ArithmeticType>(*j.template get_ptr<const typename BasicJsonType::number_float_t*>());
-            break;
-        }
-        case value_t::boolean:
-        {
-            val = static_cast<ArithmeticType>(*j.template get_ptr<const typename BasicJsonType::boolean_t*>());
-            break;
-        }
-
-        case value_t::null:
-        case value_t::object:
-        case value_t::array:
-        case value_t::string:
-        case value_t::binary:
-        case value_t::discarded:
-        default:
-            JSON_THROW(type_error::create(302, concat("type must be number, but is ", j.type_name()), &j));
-    }
-}
-
-template<typename BasicJsonType, typename... Args, std::size_t... Idx>
-std::tuple<Args...> from_json_tuple_impl_base(BasicJsonType&& j, index_sequence<Idx...> /*unused*/)
-{
-    return std::make_tuple(std::forward<BasicJsonType>(j).at(Idx).template get<Args>()...);
-}
-
-template < typename BasicJsonType, class A1, class A2 >
-std::pair<A1, A2> from_json_tuple_impl(BasicJsonType&& j, identity_tag<std::pair<A1, A2>> /*unused*/, priority_tag<0> /*unused*/)
-{
-    return {std::forward<BasicJsonType>(j).at(0).template get<A1>(),
-            std::forward<BasicJsonType>(j).at(1).template get<A2>()};
-}
-
-template<typename BasicJsonType, typename A1, typename A2>
-inline void from_json_tuple_impl(BasicJsonType&& j, std::pair<A1, A2>& p, priority_tag<1> /*unused*/)
-{
-    p = from_json_tuple_impl(std::forward<BasicJsonType>(j), identity_tag<std::pair<A1, A2>> {}, priority_tag<0> {});
-}
-
-template<typename BasicJsonType, typename... Args>
-std::tuple<Args...> from_json_tuple_impl(BasicJsonType&& j, identity_tag<std::tuple<Args...>> /*unused*/, priority_tag<2> /*unused*/)
-{
-    return from_json_tuple_impl_base<BasicJsonType, Args...>(std::forward<BasicJsonType>(j), index_sequence_for<Args...> {});
-}
-
-template<typename BasicJsonType, typename... Args>
-inline void from_json_tuple_impl(BasicJsonType&& j, std::tuple<Args...>& t, priority_tag<3> /*unused*/)
-{
-    t = from_json_tuple_impl_base<BasicJsonType, Args...>(std::forward<BasicJsonType>(j), index_sequence_for<Args...> {});
-}
-
-template<typename BasicJsonType, typename TupleRelated>
-auto from_json(BasicJsonType&& j, TupleRelated&& t)
--> decltype(from_json_tuple_impl(std::forward<BasicJsonType>(j), std::forward<TupleRelated>(t), priority_tag<3> {}))
-{
-    if (JSON_HEDLEY_UNLIKELY(!j.is_array()))
-    {
-        JSON_THROW(type_error::create(302, concat("type must be array, but is ", j.type_name()), &j));
-    }
-
-    return from_json_tuple_impl(std::forward<BasicJsonType>(j), std::forward<TupleRelated>(t), priority_tag<3> {});
-}
-
-template < typename BasicJsonType, typename Key, typename Value, typename Compare, typename Allocator,
-           typename = enable_if_t < !std::is_constructible <
-                                        typename BasicJsonType::string_t, Key >::value >>
-inline void from_json(const BasicJsonType& j, std::map<Key, Value, Compare, Allocator>& m)
-{
-    if (JSON_HEDLEY_UNLIKELY(!j.is_array()))
-    {
-        JSON_THROW(type_error::create(302, concat("type must be array, but is ", j.type_name()), &j));
-    }
-    m.clear();
-    for (const auto& p : j)
-    {
-        if (JSON_HEDLEY_UNLIKELY(!p.is_array()))
-        {
-            JSON_THROW(type_error::create(302, concat("type must be array, but is ", p.type_name()), &j));
-        }
-        m.emplace(p.at(0).template get<Key>(), p.at(1).template get<Value>());
-    }
-}
-
-template < typename BasicJsonType, typename Key, typename Value, typename Hash, typename KeyEqual, typename Allocator,
-           typename = enable_if_t < !std::is_constructible <
-                                        typename BasicJsonType::string_t, Key >::value >>
-inline void from_json(const BasicJsonType& j, std::unordered_map<Key, Value, Hash, KeyEqual, Allocator>& m)
-{
-    if (JSON_HEDLEY_UNLIKELY(!j.is_array()))
-    {
-        JSON_THROW(type_error::create(302, concat("type must be array, but is ", j.type_name()), &j));
-    }
-    m.clear();
-    for (const auto& p : j)
-    {
-        if (JSON_HEDLEY_UNLIKELY(!p.is_array()))
-        {
-            JSON_THROW(type_error::create(302, concat("type must be array, but is ", p.type_name()), &j));
-        }
-        m.emplace(p.at(0).template get<Key>(), p.at(1).template get<Value>());
-    }
-}
-
-#if JSON_HAS_FILESYSTEM || JSON_HAS_EXPERIMENTAL_FILESYSTEM
-template<typename BasicJsonType>
-inline void from_json(const BasicJsonType& j, std_fs::path& p)
-{
-    if (JSON_HEDLEY_UNLIKELY(!j.is_string()))
-    {
-        JSON_THROW(type_error::create(302, concat("type must be string, but is ", j.type_name()), &j));
-    }
-    p = *j.template get_ptr<const typename BasicJsonType::string_t*>();
-}
-#endif
-
-struct from_json_fn
-{
-    template<typename BasicJsonType, typename T>
-    auto operator()(const BasicJsonType& j, T&& val) const
-    noexcept(noexcept(from_json(j, std::forward<T>(val))))
-    -> decltype(from_json(j, std::forward<T>(val)))
-    {
-        return from_json(j, std::forward<T>(val));
-    }
-};
-
-}  // namespace detail
-
-#ifndef JSON_HAS_CPP_17
-/// namespace to hold default `from_json` function
-/// to see why this is required:
-/// http://www.open-std.org/jtc1/sc22/wg21/docs/papers/2015/n4381.html
-namespace // NOLINT(cert-dcl59-cpp,fuchsia-header-anon-namespaces,google-build-namespaces)
-{
-#endif
-JSON_INLINE_VARIABLE constexpr const auto& from_json = // NOLINT(misc-definitions-in-headers)
-    detail::static_const<detail::from_json_fn>::value;
-#ifndef JSON_HAS_CPP_17
-}  // namespace
-#endif
-
-NLOHMANN_JSON_NAMESPACE_END

sample/lib/json/include/nlohmann/detail/conversions/to_json.hpp

@@ -1,447 +0,0 @@
-//     __ _____ _____ _____
-//  __|  |   __|     |   | |  JSON for Modern C++
-// |  |  |__   |  |  | | | |  version 3.11.3
-// |_____|_____|_____|_|___|  https://github.com/nlohmann/json
-//
-// SPDX-FileCopyrightText: 2013-2023 Niels Lohmann <https://nlohmann.me>
-// SPDX-License-Identifier: MIT
-
-#pragma once
-
-#include <algorithm> // copy
-#include <iterator> // begin, end
-#include <string> // string
-#include <tuple> // tuple, get
-#include <type_traits> // is_same, is_constructible, is_floating_point, is_enum, underlying_type
-#include <utility> // move, forward, declval, pair
-#include <valarray> // valarray
-#include <vector> // vector
-
-#include <nlohmann/detail/iterators/iteration_proxy.hpp>
-#include <nlohmann/detail/macro_scope.hpp>
-#include <nlohmann/detail/meta/cpp_future.hpp>
-#include <nlohmann/detail/meta/std_fs.hpp>
-#include <nlohmann/detail/meta/type_traits.hpp>
-#include <nlohmann/detail/value_t.hpp>
-
-NLOHMANN_JSON_NAMESPACE_BEGIN
-namespace detail
-{
-
-//////////////////
-// constructors //
-//////////////////
-
-/*
- * Note all external_constructor<>::construct functions need to call
- * j.m_data.m_value.destroy(j.m_data.m_type) to avoid a memory leak in case j contains an
- * allocated value (e.g., a string). See bug issue
- * https://github.com/nlohmann/json/issues/2865 for more information.
- */
-
-template<value_t> struct external_constructor;
-
-template<>
-struct external_constructor<value_t::boolean>
-{
-    template<typename BasicJsonType>
-    static void construct(BasicJsonType& j, typename BasicJsonType::boolean_t b) noexcept
-    {
-        j.m_data.m_value.destroy(j.m_data.m_type);
-        j.m_data.m_type = value_t::boolean;
-        j.m_data.m_value = b;
-        j.assert_invariant();
-    }
-};
-
-template<>
-struct external_constructor<value_t::string>
-{
-    template<typename BasicJsonType>
-    static void construct(BasicJsonType& j, const typename BasicJsonType::string_t& s)
-    {
-        j.m_data.m_value.destroy(j.m_data.m_type);
-        j.m_data.m_type = value_t::string;
-        j.m_data.m_value = s;
-        j.assert_invariant();
-    }
-
-    template<typename BasicJsonType>
-    static void construct(BasicJsonType& j, typename BasicJsonType::string_t&& s)
-    {
-        j.m_data.m_value.destroy(j.m_data.m_type);
-        j.m_data.m_type = value_t::string;
-        j.m_data.m_value = std::move(s);
-        j.assert_invariant();
-    }
-
-    template < typename BasicJsonType, typename CompatibleStringType,
-               enable_if_t < !std::is_same<CompatibleStringType, typename BasicJsonType::string_t>::value,
-                             int > = 0 >
-    static void construct(BasicJsonType& j, const CompatibleStringType& str)
-    {
-        j.m_data.m_value.destroy(j.m_data.m_type);
-        j.m_data.m_type = value_t::string;
-        j.m_data.m_value.string = j.template create<typename BasicJsonType::string_t>(str);
-        j.assert_invariant();
-    }
-};
-
-template<>
-struct external_constructor<value_t::binary>
-{
-    template<typename BasicJsonType>
-    static void construct(BasicJsonType& j, const typename BasicJsonType::binary_t& b)
-    {
-        j.m_data.m_value.destroy(j.m_data.m_type);
-        j.m_data.m_type = value_t::binary;
-        j.m_data.m_value = typename BasicJsonType::binary_t(b);
-        j.assert_invariant();
-    }
-
-    template<typename BasicJsonType>
-    static void construct(BasicJsonType& j, typename BasicJsonType::binary_t&& b)
-    {
-        j.m_data.m_value.destroy(j.m_data.m_type);
-        j.m_data.m_type = value_t::binary;
-        j.m_data.m_value = typename BasicJsonType::binary_t(std::move(b));
-        j.assert_invariant();
-    }
-};
-
-template<>
-struct external_constructor<value_t::number_float>
-{
-    template<typename BasicJsonType>
-    static void construct(BasicJsonType& j, typename BasicJsonType::number_float_t val) noexcept
-    {
-        j.m_data.m_value.destroy(j.m_data.m_type);
-        j.m_data.m_type = value_t::number_float;
-        j.m_data.m_value = val;
-        j.assert_invariant();
-    }
-};
-
-template<>
-struct external_constructor<value_t::number_unsigned>
-{
-    template<typename BasicJsonType>
-    static void construct(BasicJsonType& j, typename BasicJsonType::number_unsigned_t val) noexcept
-    {
-        j.m_data.m_value.destroy(j.m_data.m_type);
-        j.m_data.m_type = value_t::number_unsigned;
-        j.m_data.m_value = val;
-        j.assert_invariant();
-    }
-};
-
-template<>
-struct external_constructor<value_t::number_integer>
-{
-    template<typename BasicJsonType>
-    static void construct(BasicJsonType& j, typename BasicJsonType::number_integer_t val) noexcept
-    {
-        j.m_data.m_value.destroy(j.m_data.m_type);
-        j.m_data.m_type = value_t::number_integer;
-        j.m_data.m_value = val;
-        j.assert_invariant();
-    }
-};
-
-template<>
-struct external_constructor<value_t::array>
-{
-    template<typename BasicJsonType>
-    static void construct(BasicJsonType& j, const typename BasicJsonType::array_t& arr)
-    {
-        j.m_data.m_value.destroy(j.m_data.m_type);
-        j.m_data.m_type = value_t::array;
-        j.m_data.m_value = arr;
-        j.set_parents();
-        j.assert_invariant();
-    }
-
-    template<typename BasicJsonType>
-    static void construct(BasicJsonType& j, typename BasicJsonType::array_t&& arr)
-    {
-        j.m_data.m_value.destroy(j.m_data.m_type);
-        j.m_data.m_type = value_t::array;
-        j.m_data.m_value = std::move(arr);
-        j.set_parents();
-        j.assert_invariant();
-    }
-
-    template < typename BasicJsonType, typename CompatibleArrayType,
-               enable_if_t < !std::is_same<CompatibleArrayType, typename BasicJsonType::array_t>::value,
-                             int > = 0 >
-    static void construct(BasicJsonType& j, const CompatibleArrayType& arr)
-    {
-        using std::begin;
-        using std::end;
-
-        j.m_data.m_value.destroy(j.m_data.m_type);
-        j.m_data.m_type = value_t::array;
-        j.m_data.m_value.array = j.template create<typename BasicJsonType::array_t>(begin(arr), end(arr));
-        j.set_parents();
-        j.assert_invariant();
-    }
-
-    template<typename BasicJsonType>
-    static void construct(BasicJsonType& j, const std::vector<bool>& arr)
-    {
-        j.m_data.m_value.destroy(j.m_data.m_type);
-        j.m_data.m_type = value_t::array;
-        j.m_data.m_value = value_t::array;
-        j.m_data.m_value.array->reserve(arr.size());
-        for (const bool x : arr)
-        {
-            j.m_data.m_value.array->push_back(x);
-            j.set_parent(j.m_data.m_value.array->back());
-        }
-        j.assert_invariant();
-    }
-
-    template<typename BasicJsonType, typename T,
-             enable_if_t<std::is_convertible<T, BasicJsonType>::value, int> = 0>
-    static void construct(BasicJsonType& j, const std::valarray<T>& arr)
-    {
-        j.m_data.m_value.destroy(j.m_data.m_type);
-        j.m_data.m_type = value_t::array;
-        j.m_data.m_value = value_t::array;
-        j.m_data.m_value.array->resize(arr.size());
-        if (arr.size() > 0)
-        {
-            std::copy(std::begin(arr), std::end(arr), j.m_data.m_value.array->begin());
-        }
-        j.set_parents();
-        j.assert_invariant();
-    }
-};
-
-template<>
-struct external_constructor<value_t::object>
-{
-    template<typename BasicJsonType>
-    static void construct(BasicJsonType& j, const typename BasicJsonType::object_t& obj)
-    {
-        j.m_data.m_value.destroy(j.m_data.m_type);
-        j.m_data.m_type = value_t::object;
-        j.m_data.m_value = obj;
-        j.set_parents();
-        j.assert_invariant();
-    }
-
-    template<typename BasicJsonType>
-    static void construct(BasicJsonType& j, typename BasicJsonType::object_t&& obj)
-    {
-        j.m_data.m_value.destroy(j.m_data.m_type);
-        j.m_data.m_type = value_t::object;
-        j.m_data.m_value = std::move(obj);
-        j.set_parents();
-        j.assert_invariant();
-    }
-
-    template < typename BasicJsonType, typename CompatibleObjectType,
-               enable_if_t < !std::is_same<CompatibleObjectType, typename BasicJsonType::object_t>::value, int > = 0 >
-    static void construct(BasicJsonType& j, const CompatibleObjectType& obj)
-    {
-        using std::begin;
-        using std::end;
-
-        j.m_data.m_value.destroy(j.m_data.m_type);
-        j.m_data.m_type = value_t::object;
-        j.m_data.m_value.object = j.template create<typename BasicJsonType::object_t>(begin(obj), end(obj));
-        j.set_parents();
-        j.assert_invariant();
-    }
-};
-
-/////////////
-// to_json //
-/////////////
-
-template<typename BasicJsonType, typename T,
-         enable_if_t<std::is_same<T, typename BasicJsonType::boolean_t>::value, int> = 0>
-inline void to_json(BasicJsonType& j, T b) noexcept
-{
-    external_constructor<value_t::boolean>::construct(j, b);
-}
-
-template < typename BasicJsonType, typename BoolRef,
-           enable_if_t <
-               ((std::is_same<std::vector<bool>::reference, BoolRef>::value
-                 && !std::is_same <std::vector<bool>::reference, typename BasicJsonType::boolean_t&>::value)
-                || (std::is_same<std::vector<bool>::const_reference, BoolRef>::value
-                    && !std::is_same <detail::uncvref_t<std::vector<bool>::const_reference>,
-                                      typename BasicJsonType::boolean_t >::value))
-               && std::is_convertible<const BoolRef&, typename BasicJsonType::boolean_t>::value, int > = 0 >
-inline void to_json(BasicJsonType& j, const BoolRef& b) noexcept
-{
-    external_constructor<value_t::boolean>::construct(j, static_cast<typename BasicJsonType::boolean_t>(b));
-}
-
-template<typename BasicJsonType, typename CompatibleString,
-         enable_if_t<std::is_constructible<typename BasicJsonType::string_t, CompatibleString>::value, int> = 0>
-inline void to_json(BasicJsonType& j, const CompatibleString& s)
-{
-    external_constructor<value_t::string>::construct(j, s);
-}
-
-template<typename BasicJsonType>
-inline void to_json(BasicJsonType& j, typename BasicJsonType::string_t&& s)
-{
-    external_constructor<value_t::string>::construct(j, std::move(s));
-}
-
-template<typename BasicJsonType, typename FloatType,
-         enable_if_t<std::is_floating_point<FloatType>::value, int> = 0>
-inline void to_json(BasicJsonType& j, FloatType val) noexcept
-{
-    external_constructor<value_t::number_float>::construct(j, static_cast<typename BasicJsonType::number_float_t>(val));
-}
-
-template<typename BasicJsonType, typename CompatibleNumberUnsignedType,
-         enable_if_t<is_compatible_integer_type<typename BasicJsonType::number_unsigned_t, CompatibleNumberUnsignedType>::value, int> = 0>
-inline void to_json(BasicJsonType& j, CompatibleNumberUnsignedType val) noexcept
-{
-    external_constructor<value_t::number_unsigned>::construct(j, static_cast<typename BasicJsonType::number_unsigned_t>(val));
-}
-
-template<typename BasicJsonType, typename CompatibleNumberIntegerType,
-         enable_if_t<is_compatible_integer_type<typename BasicJsonType::number_integer_t, CompatibleNumberIntegerType>::value, int> = 0>
-inline void to_json(BasicJsonType& j, CompatibleNumberIntegerType val) noexcept
-{
-    external_constructor<value_t::number_integer>::construct(j, static_cast<typename BasicJsonType::number_integer_t>(val));
-}
-
-#if !JSON_DISABLE_ENUM_SERIALIZATION
-template<typename BasicJsonType, typename EnumType,
-         enable_if_t<std::is_enum<EnumType>::value, int> = 0>
-inline void to_json(BasicJsonType& j, EnumType e) noexcept
-{
-    using underlying_type = typename std::underlying_type<EnumType>::type;
-    static constexpr value_t integral_value_t = std::is_unsigned<underlying_type>::value ? value_t::number_unsigned : value_t::number_integer;
-    external_constructor<integral_value_t>::construct(j, static_cast<underlying_type>(e));
-}
-#endif  // JSON_DISABLE_ENUM_SERIALIZATION
-
-template<typename BasicJsonType>
-inline void to_json(BasicJsonType& j, const std::vector<bool>& e)
-{
-    external_constructor<value_t::array>::construct(j, e);
-}
-
-template < typename BasicJsonType, typename CompatibleArrayType,
-           enable_if_t < is_compatible_array_type<BasicJsonType,
-                         CompatibleArrayType>::value&&
-                         !is_compatible_object_type<BasicJsonType, CompatibleArrayType>::value&&
-                         !is_compatible_string_type<BasicJsonType, CompatibleArrayType>::value&&
-                         !std::is_same<typename BasicJsonType::binary_t, CompatibleArrayType>::value&&
-                         !is_basic_json<CompatibleArrayType>::value,
-                         int > = 0 >
-inline void to_json(BasicJsonType& j, const CompatibleArrayType& arr)
-{
-    external_constructor<value_t::array>::construct(j, arr);
-}
-
-template<typename BasicJsonType>
-inline void to_json(BasicJsonType& j, const typename BasicJsonType::binary_t& bin)
-{
-    external_constructor<value_t::binary>::construct(j, bin);
-}
-
-template<typename BasicJsonType, typename T,
-         enable_if_t<std::is_convertible<T, BasicJsonType>::value, int> = 0>
-inline void to_json(BasicJsonType& j, const std::valarray<T>& arr)
-{
-    external_constructor<value_t::array>::construct(j, std::move(arr));
-}
-
-template<typename BasicJsonType>
-inline void to_json(BasicJsonType& j, typename BasicJsonType::array_t&& arr)
-{
-    external_constructor<value_t::array>::construct(j, std::move(arr));
-}
-
-template < typename BasicJsonType, typename CompatibleObjectType,
-           enable_if_t < is_compatible_object_type<BasicJsonType, CompatibleObjectType>::value&& !is_basic_json<CompatibleObjectType>::value, int > = 0 >
-inline void to_json(BasicJsonType& j, const CompatibleObjectType& obj)
-{
-    external_constructor<value_t::object>::construct(j, obj);
-}
-
-template<typename BasicJsonType>
-inline void to_json(BasicJsonType& j, typename BasicJsonType::object_t&& obj)
-{
-    external_constructor<value_t::object>::construct(j, std::move(obj));
-}
-
-template <
-    typename BasicJsonType, typename T, std::size_t N,
-    enable_if_t < !std::is_constructible<typename BasicJsonType::string_t,
-                  const T(&)[N]>::value, // NOLINT(cppcoreguidelines-avoid-c-arrays,hicpp-avoid-c-arrays,modernize-avoid-c-arrays)
-                  int > = 0 >
-inline void to_json(BasicJsonType& j, const T(&arr)[N]) // NOLINT(cppcoreguidelines-avoid-c-arrays,hicpp-avoid-c-arrays,modernize-avoid-c-arrays)
-{
-    external_constructor<value_t::array>::construct(j, arr);
-}
-
-template < typename BasicJsonType, typename T1, typename T2, enable_if_t < std::is_constructible<BasicJsonType, T1>::value&& std::is_constructible<BasicJsonType, T2>::value, int > = 0 >
-inline void to_json(BasicJsonType& j, const std::pair<T1, T2>& p)
-{
-    j = { p.first, p.second };
-}
-
-// for https://github.com/nlohmann/json/pull/1134
-template<typename BasicJsonType, typename T,
-         enable_if_t<std::is_same<T, iteration_proxy_value<typename BasicJsonType::iterator>>::value, int> = 0>
-inline void to_json(BasicJsonType& j, const T& b)
-{
-    j = { {b.key(), b.value()} };
-}
-
-template<typename BasicJsonType, typename Tuple, std::size_t... Idx>
-inline void to_json_tuple_impl(BasicJsonType& j, const Tuple& t, index_sequence<Idx...> /*unused*/)
-{
-    j = { std::get<Idx>(t)... };
-}
-
-template<typename BasicJsonType, typename T, enable_if_t<is_constructible_tuple<BasicJsonType, T>::value, int > = 0>
-inline void to_json(BasicJsonType& j, const T& t)
-{
-    to_json_tuple_impl(j, t, make_index_sequence<std::tuple_size<T>::value> {});
-}
-
-#if JSON_HAS_FILESYSTEM || JSON_HAS_EXPERIMENTAL_FILESYSTEM
-template<typename BasicJsonType>
-inline void to_json(BasicJsonType& j, const std_fs::path& p)
-{
-    j = p.string();
-}
-#endif
-
-struct to_json_fn
-{
-    template<typename BasicJsonType, typename T>
-    auto operator()(BasicJsonType& j, T&& val) const noexcept(noexcept(to_json(j, std::forward<T>(val))))
-    -> decltype(to_json(j, std::forward<T>(val)), void())
-    {
-        return to_json(j, std::forward<T>(val));
-    }
-};
-}  // namespace detail
-
-#ifndef JSON_HAS_CPP_17
-/// namespace to hold default `to_json` function
-/// to see why this is required:
-/// http://www.open-std.org/jtc1/sc22/wg21/docs/papers/2015/n4381.html
-namespace // NOLINT(cert-dcl59-cpp,fuchsia-header-anon-namespaces,google-build-namespaces)
-{
-#endif
-JSON_INLINE_VARIABLE constexpr const auto& to_json = // NOLINT(misc-definitions-in-headers)
-    detail::static_const<detail::to_json_fn>::value;
-#ifndef JSON_HAS_CPP_17
-}  // namespace
-#endif
-
-NLOHMANN_JSON_NAMESPACE_END

sample/lib/json/include/nlohmann/detail/exceptions.hpp

@@ -1,257 +0,0 @@
-//     __ _____ _____ _____
-//  __|  |   __|     |   | |  JSON for Modern C++
-// |  |  |__   |  |  | | | |  version 3.11.3
-// |_____|_____|_____|_|___|  https://github.com/nlohmann/json
-//
-// SPDX-FileCopyrightText: 2013-2023 Niels Lohmann <https://nlohmann.me>
-// SPDX-License-Identifier: MIT
-
-#pragma once
-
-#include <cstddef> // nullptr_t
-#include <exception> // exception
-#if JSON_DIAGNOSTICS
-    #include <numeric> // accumulate
-#endif
-#include <stdexcept> // runtime_error
-#include <string> // to_string
-#include <vector> // vector
-
-#include <nlohmann/detail/value_t.hpp>
-#include <nlohmann/detail/string_escape.hpp>
-#include <nlohmann/detail/input/position_t.hpp>
-#include <nlohmann/detail/macro_scope.hpp>
-#include <nlohmann/detail/meta/cpp_future.hpp>
-#include <nlohmann/detail/meta/type_traits.hpp>
-#include <nlohmann/detail/string_concat.hpp>
-
-NLOHMANN_JSON_NAMESPACE_BEGIN
-namespace detail
-{
-
-////////////////
-// exceptions //
-////////////////
-
-/// @brief general exception of the @ref basic_json class
-/// @sa https://json.nlohmann.me/api/basic_json/exception/
-class exception : public std::exception
-{
-  public:
-    /// returns the explanatory string
-    const char* what() const noexcept override
-    {
-        return m.what();
-    }
-
-    /// the id of the exception
-    const int id; // NOLINT(cppcoreguidelines-non-private-member-variables-in-classes)
-
-  protected:
-    JSON_HEDLEY_NON_NULL(3)
-    exception(int id_, const char* what_arg) : id(id_), m(what_arg) {} // NOLINT(bugprone-throw-keyword-missing)
-
-    static std::string name(const std::string& ename, int id_)
-    {
-        return concat("[json.exception.", ename, '.', std::to_string(id_), "] ");
-    }
-
-    static std::string diagnostics(std::nullptr_t /*leaf_element*/)
-    {
-        return "";
-    }
-
-    template<typename BasicJsonType>
-    static std::string diagnostics(const BasicJsonType* leaf_element)
-    {
-#if JSON_DIAGNOSTICS
-        std::vector<std::string> tokens;
-        for (const auto* current = leaf_element; current != nullptr && current->m_parent != nullptr; current = current->m_parent)
-        {
-            switch (current->m_parent->type())
-            {
-                case value_t::array:
-                {
-                    for (std::size_t i = 0; i < current->m_parent->m_data.m_value.array->size(); ++i)
-                    {
-                        if (&current->m_parent->m_data.m_value.array->operator[](i) == current)
-                        {
-                            tokens.emplace_back(std::to_string(i));
-                            break;
-                        }
-                    }
-                    break;
-                }
-
-                case value_t::object:
-                {
-                    for (const auto& element : *current->m_parent->m_data.m_value.object)
-                    {
-                        if (&element.second == current)
-                        {
-                            tokens.emplace_back(element.first.c_str());
-                            break;
-                        }
-                    }
-                    break;
-                }
-
-                case value_t::null: // LCOV_EXCL_LINE
-                case value_t::string: // LCOV_EXCL_LINE
-                case value_t::boolean: // LCOV_EXCL_LINE
-                case value_t::number_integer: // LCOV_EXCL_LINE
-                case value_t::number_unsigned: // LCOV_EXCL_LINE
-                case value_t::number_float: // LCOV_EXCL_LINE
-                case value_t::binary: // LCOV_EXCL_LINE
-                case value_t::discarded: // LCOV_EXCL_LINE
-                default:   // LCOV_EXCL_LINE
-                    break; // LCOV_EXCL_LINE
-            }
-        }
-
-        if (tokens.empty())
-        {
-            return "";
-        }
-
-        auto str = std::accumulate(tokens.rbegin(), tokens.rend(), std::string{},
-                                   [](const std::string & a, const std::string & b)
-        {
-            return concat(a, '/', detail::escape(b));
-        });
-        return concat('(', str, ") ");
-#else
-        static_cast<void>(leaf_element);
-        return "";
-#endif
-    }
-
-  private:
-    /// an exception object as storage for error messages
-    std::runtime_error m;
-};
-
-/// @brief exception indicating a parse error
-/// @sa https://json.nlohmann.me/api/basic_json/parse_error/
-class parse_error : public exception
-{
-  public:
-    /*!
-    @brief create a parse error exception
-    @param[in] id_       the id of the exception
-    @param[in] pos       the position where the error occurred (or with
-                         chars_read_total=0 if the position cannot be
-                         determined)
-    @param[in] what_arg  the explanatory string
-    @return parse_error object
-    */
-    template<typename BasicJsonContext, enable_if_t<is_basic_json_context<BasicJsonContext>::value, int> = 0>
-    static parse_error create(int id_, const position_t& pos, const std::string& what_arg, BasicJsonContext context)
-    {
-        const std::string w = concat(exception::name("parse_error", id_), "parse error",
-                                     position_string(pos), ": ", exception::diagnostics(context), what_arg);
-        return {id_, pos.chars_read_total, w.c_str()};
-    }
-
-    template<typename BasicJsonContext, enable_if_t<is_basic_json_context<BasicJsonContext>::value, int> = 0>
-    static parse_error create(int id_, std::size_t byte_, const std::string& what_arg, BasicJsonContext context)
-    {
-        const std::string w = concat(exception::name("parse_error", id_), "parse error",
-                                     (byte_ != 0 ? (concat(" at byte ", std::to_string(byte_))) : ""),
-                                     ": ", exception::diagnostics(context), what_arg);
-        return {id_, byte_, w.c_str()};
-    }
-
-    /*!
-    @brief byte index of the parse error
-
-    The byte index of the last read character in the input file.
-
-    @note For an input with n bytes, 1 is the index of the first character and
-          n+1 is the index of the terminating null byte or the end of file.
-          This also holds true when reading a byte vector (CBOR or MessagePack).
-    */
-    const std::size_t byte;
-
-  private:
-    parse_error(int id_, std::size_t byte_, const char* what_arg)
-        : exception(id_, what_arg), byte(byte_) {}
-
-    static std::string position_string(const position_t& pos)
-    {
-        return concat(" at line ", std::to_string(pos.lines_read + 1),
-                      ", column ", std::to_string(pos.chars_read_current_line));
-    }
-};
-
-/// @brief exception indicating errors with iterators
-/// @sa https://json.nlohmann.me/api/basic_json/invalid_iterator/
-class invalid_iterator : public exception
-{
-  public:
-    template<typename BasicJsonContext, enable_if_t<is_basic_json_context<BasicJsonContext>::value, int> = 0>
-    static invalid_iterator create(int id_, const std::string& what_arg, BasicJsonContext context)
-    {
-        const std::string w = concat(exception::name("invalid_iterator", id_), exception::diagnostics(context), what_arg);
-        return {id_, w.c_str()};
-    }
-
-  private:
-    JSON_HEDLEY_NON_NULL(3)
-    invalid_iterator(int id_, const char* what_arg)
-        : exception(id_, what_arg) {}
-};
-
-/// @brief exception indicating executing a member function with a wrong type
-/// @sa https://json.nlohmann.me/api/basic_json/type_error/
-class type_error : public exception
-{
-  public:
-    template<typename BasicJsonContext, enable_if_t<is_basic_json_context<BasicJsonContext>::value, int> = 0>
-    static type_error create(int id_, const std::string& what_arg, BasicJsonContext context)
-    {
-        const std::string w = concat(exception::name("type_error", id_), exception::diagnostics(context), what_arg);
-        return {id_, w.c_str()};
-    }
-
-  private:
-    JSON_HEDLEY_NON_NULL(3)
-    type_error(int id_, const char* what_arg) : exception(id_, what_arg) {}
-};
-
-/// @brief exception indicating access out of the defined range
-/// @sa https://json.nlohmann.me/api/basic_json/out_of_range/
-class out_of_range : public exception
-{
-  public:
-    template<typename BasicJsonContext, enable_if_t<is_basic_json_context<BasicJsonContext>::value, int> = 0>
-    static out_of_range create(int id_, const std::string& what_arg, BasicJsonContext context)
-    {
-        const std::string w = concat(exception::name("out_of_range", id_), exception::diagnostics(context), what_arg);
-        return {id_, w.c_str()};
-    }
-
-  private:
-    JSON_HEDLEY_NON_NULL(3)
-    out_of_range(int id_, const char* what_arg) : exception(id_, what_arg) {}
-};
-
-/// @brief exception indicating other library errors
-/// @sa https://json.nlohmann.me/api/basic_json/other_error/
-class other_error : public exception
-{
-  public:
-    template<typename BasicJsonContext, enable_if_t<is_basic_json_context<BasicJsonContext>::value, int> = 0>
-    static other_error create(int id_, const std::string& what_arg, BasicJsonContext context)
-    {
-        const std::string w = concat(exception::name("other_error", id_), exception::diagnostics(context), what_arg);
-        return {id_, w.c_str()};
-    }
-
-  private:
-    JSON_HEDLEY_NON_NULL(3)
-    other_error(int id_, const char* what_arg) : exception(id_, what_arg) {}
-};
-
-}  // namespace detail
-NLOHMANN_JSON_NAMESPACE_END

sample/lib/json/include/nlohmann/detail/hash.hpp

@@ -1,129 +0,0 @@
-//     __ _____ _____ _____
-//  __|  |   __|     |   | |  JSON for Modern C++
-// |  |  |__   |  |  | | | |  version 3.11.3
-// |_____|_____|_____|_|___|  https://github.com/nlohmann/json
-//
-// SPDX-FileCopyrightText: 2013-2023 Niels Lohmann <https://nlohmann.me>
-// SPDX-License-Identifier: MIT
-
-#pragma once
-
-#include <cstdint> // uint8_t
-#include <cstddef> // size_t
-#include <functional> // hash
-
-#include <nlohmann/detail/abi_macros.hpp>
-#include <nlohmann/detail/value_t.hpp>
-
-NLOHMANN_JSON_NAMESPACE_BEGIN
-namespace detail
-{
-
-// boost::hash_combine
-inline std::size_t combine(std::size_t seed, std::size_t h) noexcept
-{
-    seed ^= h + 0x9e3779b9 + (seed << 6U) + (seed >> 2U);
-    return seed;
-}
-
-/*!
-@brief hash a JSON value
-
-The hash function tries to rely on std::hash where possible. Furthermore, the
-type of the JSON value is taken into account to have different hash values for
-null, 0, 0U, and false, etc.
-
-@tparam BasicJsonType basic_json specialization
-@param j JSON value to hash
-@return hash value of j
-*/
-template<typename BasicJsonType>
-std::size_t hash(const BasicJsonType& j)
-{
-    using string_t = typename BasicJsonType::string_t;
-    using number_integer_t = typename BasicJsonType::number_integer_t;
-    using number_unsigned_t = typename BasicJsonType::number_unsigned_t;
-    using number_float_t = typename BasicJsonType::number_float_t;
-
-    const auto type = static_cast<std::size_t>(j.type());
-    switch (j.type())
-    {
-        case BasicJsonType::value_t::null:
-        case BasicJsonType::value_t::discarded:
-        {
-            return combine(type, 0);
-        }
-
-        case BasicJsonType::value_t::object:
-        {
-            auto seed = combine(type, j.size());
-            for (const auto& element : j.items())
-            {
-                const auto h = std::hash<string_t> {}(element.key());
-                seed = combine(seed, h);
-                seed = combine(seed, hash(element.value()));
-            }
-            return seed;
-        }
-
-        case BasicJsonType::value_t::array:
-        {
-            auto seed = combine(type, j.size());
-            for (const auto& element : j)
-            {
-                seed = combine(seed, hash(element));
-            }
-            return seed;
-        }
-
-        case BasicJsonType::value_t::string:
-        {
-            const auto h = std::hash<string_t> {}(j.template get_ref<const string_t&>());
-            return combine(type, h);
-        }
-
-        case BasicJsonType::value_t::boolean:
-        {
-            const auto h = std::hash<bool> {}(j.template get<bool>());
-            return combine(type, h);
-        }
-
-        case BasicJsonType::value_t::number_integer:
-        {
-            const auto h = std::hash<number_integer_t> {}(j.template get<number_integer_t>());
-            return combine(type, h);
-        }
-
-        case BasicJsonType::value_t::number_unsigned:
-        {
-            const auto h = std::hash<number_unsigned_t> {}(j.template get<number_unsigned_t>());
-            return combine(type, h);
-        }
-
-        case BasicJsonType::value_t::number_float:
-        {
-            const auto h = std::hash<number_float_t> {}(j.template get<number_float_t>());
-            return combine(type, h);
-        }
-
-        case BasicJsonType::value_t::binary:
-        {
-            auto seed = combine(type, j.get_binary().size());
-            const auto h = std::hash<bool> {}(j.get_binary().has_subtype());
-            seed = combine(seed, h);
-            seed = combine(seed, static_cast<std::size_t>(j.get_binary().subtype()));
-            for (const auto byte : j.get_binary())
-            {
-                seed = combine(seed, std::hash<std::uint8_t> {}(byte));
-            }
-            return seed;
-        }
-
-        default:                   // LCOV_EXCL_LINE
-            JSON_ASSERT(false); // NOLINT(cert-dcl03-c,hicpp-static-assert,misc-static-assert) LCOV_EXCL_LINE
-            return 0;              // LCOV_EXCL_LINE
-    }
-}
-
-}  // namespace detail
-NLOHMANN_JSON_NAMESPACE_END

sample/lib/json/include/nlohmann/detail/input/input_adapters.hpp

@@ -1,492 +0,0 @@
-//     __ _____ _____ _____
-//  __|  |   __|     |   | |  JSON for Modern C++
-// |  |  |__   |  |  | | | |  version 3.11.3
-// |_____|_____|_____|_|___|  https://github.com/nlohmann/json
-//
-// SPDX-FileCopyrightText: 2013-2023 Niels Lohmann <https://nlohmann.me>
-// SPDX-License-Identifier: MIT
-
-#pragma once
-
-#include <array> // array
-#include <cstddef> // size_t
-#include <cstring> // strlen
-#include <iterator> // begin, end, iterator_traits, random_access_iterator_tag, distance, next
-#include <memory> // shared_ptr, make_shared, addressof
-#include <numeric> // accumulate
-#include <string> // string, char_traits
-#include <type_traits> // enable_if, is_base_of, is_pointer, is_integral, remove_pointer
-#include <utility> // pair, declval
-
-#ifndef JSON_NO_IO
-    #include <cstdio>   // FILE *
-    #include <istream>  // istream
-#endif                  // JSON_NO_IO
-
-#include <nlohmann/detail/iterators/iterator_traits.hpp>
-#include <nlohmann/detail/macro_scope.hpp>
-#include <nlohmann/detail/meta/type_traits.hpp>
-
-NLOHMANN_JSON_NAMESPACE_BEGIN
-namespace detail
-{
-
-/// the supported input formats
-enum class input_format_t { json, cbor, msgpack, ubjson, bson, bjdata };
-
-////////////////////
-// input adapters //
-////////////////////
-
-#ifndef JSON_NO_IO
-/*!
-Input adapter for stdio file access. This adapter read only 1 byte and do not use any
- buffer. This adapter is a very low level adapter.
-*/
-class file_input_adapter
-{
-  public:
-    using char_type = char;
-
-    JSON_HEDLEY_NON_NULL(2)
-    explicit file_input_adapter(std::FILE* f) noexcept
-        : m_file(f)
-    {
-        JSON_ASSERT(m_file != nullptr);
-    }
-
-    // make class move-only
-    file_input_adapter(const file_input_adapter&) = delete;
-    file_input_adapter(file_input_adapter&&) noexcept = default;
-    file_input_adapter& operator=(const file_input_adapter&) = delete;
-    file_input_adapter& operator=(file_input_adapter&&) = delete;
-    ~file_input_adapter() = default;
-
-    std::char_traits<char>::int_type get_character() noexcept
-    {
-        return std::fgetc(m_file);
-    }
-
-  private:
-    /// the file pointer to read from
-    std::FILE* m_file;
-};
-
-/*!
-Input adapter for a (caching) istream. Ignores a UFT Byte Order Mark at
-beginning of input. Does not support changing the underlying std::streambuf
-in mid-input. Maintains underlying std::istream and std::streambuf to support
-subsequent use of standard std::istream operations to process any input
-characters following those used in parsing the JSON input.  Clears the
-std::istream flags; any input errors (e.g., EOF) will be detected by the first
-subsequent call for input from the std::istream.
-*/
-class input_stream_adapter
-{
-  public:
-    using char_type = char;
-
-    ~input_stream_adapter()
-    {
-        // clear stream flags; we use underlying streambuf I/O, do not
-        // maintain ifstream flags, except eof
-        if (is != nullptr)
-        {
-            is->clear(is->rdstate() & std::ios::eofbit);
-        }
-    }
-
-    explicit input_stream_adapter(std::istream& i)
-        : is(&i), sb(i.rdbuf())
-    {}
-
-    // delete because of pointer members
-    input_stream_adapter(const input_stream_adapter&) = delete;
-    input_stream_adapter& operator=(input_stream_adapter&) = delete;
-    input_stream_adapter& operator=(input_stream_adapter&&) = delete;
-
-    input_stream_adapter(input_stream_adapter&& rhs) noexcept
-        : is(rhs.is), sb(rhs.sb)
-    {
-        rhs.is = nullptr;
-        rhs.sb = nullptr;
-    }
-
-    // std::istream/std::streambuf use std::char_traits<char>::to_int_type, to
-    // ensure that std::char_traits<char>::eof() and the character 0xFF do not
-    // end up as the same value, e.g. 0xFFFFFFFF.
-    std::char_traits<char>::int_type get_character()
-    {
-        auto res = sb->sbumpc();
-        // set eof manually, as we don't use the istream interface.
-        if (JSON_HEDLEY_UNLIKELY(res == std::char_traits<char>::eof()))
-        {
-            is->clear(is->rdstate() | std::ios::eofbit);
-        }
-        return res;
-    }
-
-  private:
-    /// the associated input stream
-    std::istream* is = nullptr;
-    std::streambuf* sb = nullptr;
-};
-#endif  // JSON_NO_IO
-
-// General-purpose iterator-based adapter. It might not be as fast as
-// theoretically possible for some containers, but it is extremely versatile.
-template<typename IteratorType>
-class iterator_input_adapter
-{
-  public:
-    using char_type = typename std::iterator_traits<IteratorType>::value_type;
-
-    iterator_input_adapter(IteratorType first, IteratorType last)
-        : current(std::move(first)), end(std::move(last))
-    {}
-
-    typename char_traits<char_type>::int_type get_character()
-    {
-        if (JSON_HEDLEY_LIKELY(current != end))
-        {
-            auto result = char_traits<char_type>::to_int_type(*current);
-            std::advance(current, 1);
-            return result;
-        }
-
-        return char_traits<char_type>::eof();
-    }
-
-  private:
-    IteratorType current;
-    IteratorType end;
-
-    template<typename BaseInputAdapter, size_t T>
-    friend struct wide_string_input_helper;
-
-    bool empty() const
-    {
-        return current == end;
-    }
-};
-
-template<typename BaseInputAdapter, size_t T>
-struct wide_string_input_helper;
-
-template<typename BaseInputAdapter>
-struct wide_string_input_helper<BaseInputAdapter, 4>
-{
-    // UTF-32
-    static void fill_buffer(BaseInputAdapter& input,
-                            std::array<std::char_traits<char>::int_type, 4>& utf8_bytes,
-                            size_t& utf8_bytes_index,
-                            size_t& utf8_bytes_filled)
-    {
-        utf8_bytes_index = 0;
-
-        if (JSON_HEDLEY_UNLIKELY(input.empty()))
-        {
-            utf8_bytes[0] = std::char_traits<char>::eof();
-            utf8_bytes_filled = 1;
-        }
-        else
-        {
-            // get the current character
-            const auto wc = input.get_character();
-
-            // UTF-32 to UTF-8 encoding
-            if (wc < 0x80)
-            {
-                utf8_bytes[0] = static_cast<std::char_traits<char>::int_type>(wc);
-                utf8_bytes_filled = 1;
-            }
-            else if (wc <= 0x7FF)
-            {
-                utf8_bytes[0] = static_cast<std::char_traits<char>::int_type>(0xC0u | ((static_cast<unsigned int>(wc) >> 6u) & 0x1Fu));
-                utf8_bytes[1] = static_cast<std::char_traits<char>::int_type>(0x80u | (static_cast<unsigned int>(wc) & 0x3Fu));
-                utf8_bytes_filled = 2;
-            }
-            else if (wc <= 0xFFFF)
-            {
-                utf8_bytes[0] = static_cast<std::char_traits<char>::int_type>(0xE0u | ((static_cast<unsigned int>(wc) >> 12u) & 0x0Fu));
-                utf8_bytes[1] = static_cast<std::char_traits<char>::int_type>(0x80u | ((static_cast<unsigned int>(wc) >> 6u) & 0x3Fu));
-                utf8_bytes[2] = static_cast<std::char_traits<char>::int_type>(0x80u | (static_cast<unsigned int>(wc) & 0x3Fu));
-                utf8_bytes_filled = 3;
-            }
-            else if (wc <= 0x10FFFF)
-            {
-                utf8_bytes[0] = static_cast<std::char_traits<char>::int_type>(0xF0u | ((static_cast<unsigned int>(wc) >> 18u) & 0x07u));
-                utf8_bytes[1] = static_cast<std::char_traits<char>::int_type>(0x80u | ((static_cast<unsigned int>(wc) >> 12u) & 0x3Fu));
-                utf8_bytes[2] = static_cast<std::char_traits<char>::int_type>(0x80u | ((static_cast<unsigned int>(wc) >> 6u) & 0x3Fu));
-                utf8_bytes[3] = static_cast<std::char_traits<char>::int_type>(0x80u | (static_cast<unsigned int>(wc) & 0x3Fu));
-                utf8_bytes_filled = 4;
-            }
-            else
-            {
-                // unknown character
-                utf8_bytes[0] = static_cast<std::char_traits<char>::int_type>(wc);
-                utf8_bytes_filled = 1;
-            }
-        }
-    }
-};
-
-template<typename BaseInputAdapter>
-struct wide_string_input_helper<BaseInputAdapter, 2>
-{
-    // UTF-16
-    static void fill_buffer(BaseInputAdapter& input,
-                            std::array<std::char_traits<char>::int_type, 4>& utf8_bytes,
-                            size_t& utf8_bytes_index,
-                            size_t& utf8_bytes_filled)
-    {
-        utf8_bytes_index = 0;
-
-        if (JSON_HEDLEY_UNLIKELY(input.empty()))
-        {
-            utf8_bytes[0] = std::char_traits<char>::eof();
-            utf8_bytes_filled = 1;
-        }
-        else
-        {
-            // get the current character
-            const auto wc = input.get_character();
-
-            // UTF-16 to UTF-8 encoding
-            if (wc < 0x80)
-            {
-                utf8_bytes[0] = static_cast<std::char_traits<char>::int_type>(wc);
-                utf8_bytes_filled = 1;
-            }
-            else if (wc <= 0x7FF)
-            {
-                utf8_bytes[0] = static_cast<std::char_traits<char>::int_type>(0xC0u | ((static_cast<unsigned int>(wc) >> 6u)));
-                utf8_bytes[1] = static_cast<std::char_traits<char>::int_type>(0x80u | (static_cast<unsigned int>(wc) & 0x3Fu));
-                utf8_bytes_filled = 2;
-            }
-            else if (0xD800 > wc || wc >= 0xE000)
-            {
-                utf8_bytes[0] = static_cast<std::char_traits<char>::int_type>(0xE0u | ((static_cast<unsigned int>(wc) >> 12u)));
-                utf8_bytes[1] = static_cast<std::char_traits<char>::int_type>(0x80u | ((static_cast<unsigned int>(wc) >> 6u) & 0x3Fu));
-                utf8_bytes[2] = static_cast<std::char_traits<char>::int_type>(0x80u | (static_cast<unsigned int>(wc) & 0x3Fu));
-                utf8_bytes_filled = 3;
-            }
-            else
-            {
-                if (JSON_HEDLEY_UNLIKELY(!input.empty()))
-                {
-                    const auto wc2 = static_cast<unsigned int>(input.get_character());
-                    const auto charcode = 0x10000u + (((static_cast<unsigned int>(wc) & 0x3FFu) << 10u) | (wc2 & 0x3FFu));
-                    utf8_bytes[0] = static_cast<std::char_traits<char>::int_type>(0xF0u | (charcode >> 18u));
-                    utf8_bytes[1] = static_cast<std::char_traits<char>::int_type>(0x80u | ((charcode >> 12u) & 0x3Fu));
-                    utf8_bytes[2] = static_cast<std::char_traits<char>::int_type>(0x80u | ((charcode >> 6u) & 0x3Fu));
-                    utf8_bytes[3] = static_cast<std::char_traits<char>::int_type>(0x80u | (charcode & 0x3Fu));
-                    utf8_bytes_filled = 4;
-                }
-                else
-                {
-                    utf8_bytes[0] = static_cast<std::char_traits<char>::int_type>(wc);
-                    utf8_bytes_filled = 1;
-                }
-            }
-        }
-    }
-};
-
-// Wraps another input adapter to convert wide character types into individual bytes.
-template<typename BaseInputAdapter, typename WideCharType>
-class wide_string_input_adapter
-{
-  public:
-    using char_type = char;
-
-    wide_string_input_adapter(BaseInputAdapter base)
-        : base_adapter(base) {}
-
-    typename std::char_traits<char>::int_type get_character() noexcept
-    {
-        // check if buffer needs to be filled
-        if (utf8_bytes_index == utf8_bytes_filled)
-        {
-            fill_buffer<sizeof(WideCharType)>();
-
-            JSON_ASSERT(utf8_bytes_filled > 0);
-            JSON_ASSERT(utf8_bytes_index == 0);
-        }
-
-        // use buffer
-        JSON_ASSERT(utf8_bytes_filled > 0);
-        JSON_ASSERT(utf8_bytes_index < utf8_bytes_filled);
-        return utf8_bytes[utf8_bytes_index++];
-    }
-
-  private:
-    BaseInputAdapter base_adapter;
-
-    template<size_t T>
-    void fill_buffer()
-    {
-        wide_string_input_helper<BaseInputAdapter, T>::fill_buffer(base_adapter, utf8_bytes, utf8_bytes_index, utf8_bytes_filled);
-    }
-
-    /// a buffer for UTF-8 bytes
-    std::array<std::char_traits<char>::int_type, 4> utf8_bytes = {{0, 0, 0, 0}};
-
-    /// index to the utf8_codes array for the next valid byte
-    std::size_t utf8_bytes_index = 0;
-    /// number of valid bytes in the utf8_codes array
-    std::size_t utf8_bytes_filled = 0;
-};
-
-template<typename IteratorType, typename Enable = void>
-struct iterator_input_adapter_factory
-{
-    using iterator_type = IteratorType;
-    using char_type = typename std::iterator_traits<iterator_type>::value_type;
-    using adapter_type = iterator_input_adapter<iterator_type>;
-
-    static adapter_type create(IteratorType first, IteratorType last)
-    {
-        return adapter_type(std::move(first), std::move(last));
-    }
-};
-
-template<typename T>
-struct is_iterator_of_multibyte
-{
-    using value_type = typename std::iterator_traits<T>::value_type;
-    enum
-    {
-        value = sizeof(value_type) > 1
-    };
-};
-
-template<typename IteratorType>
-struct iterator_input_adapter_factory<IteratorType, enable_if_t<is_iterator_of_multibyte<IteratorType>::value>>
-{
-    using iterator_type = IteratorType;
-    using char_type = typename std::iterator_traits<iterator_type>::value_type;
-    using base_adapter_type = iterator_input_adapter<iterator_type>;
-    using adapter_type = wide_string_input_adapter<base_adapter_type, char_type>;
-
-    static adapter_type create(IteratorType first, IteratorType last)
-    {
-        return adapter_type(base_adapter_type(std::move(first), std::move(last)));
-    }
-};
-
-// General purpose iterator-based input
-template<typename IteratorType>
-typename iterator_input_adapter_factory<IteratorType>::adapter_type input_adapter(IteratorType first, IteratorType last)
-{
-    using factory_type = iterator_input_adapter_factory<IteratorType>;
-    return factory_type::create(first, last);
-}
-
-// Convenience shorthand from container to iterator
-// Enables ADL on begin(container) and end(container)
-// Encloses the using declarations in namespace for not to leak them to outside scope
-
-namespace container_input_adapter_factory_impl
-{
-
-using std::begin;
-using std::end;
-
-template<typename ContainerType, typename Enable = void>
-struct container_input_adapter_factory {};
-
-template<typename ContainerType>
-struct container_input_adapter_factory< ContainerType,
-       void_t<decltype(begin(std::declval<ContainerType>()), end(std::declval<ContainerType>()))>>
-       {
-           using adapter_type = decltype(input_adapter(begin(std::declval<ContainerType>()), end(std::declval<ContainerType>())));
-
-           static adapter_type create(const ContainerType& container)
-{
-    return input_adapter(begin(container), end(container));
-}
-       };
-
-}  // namespace container_input_adapter_factory_impl
-
-template<typename ContainerType>
-typename container_input_adapter_factory_impl::container_input_adapter_factory<ContainerType>::adapter_type input_adapter(const ContainerType& container)
-{
-    return container_input_adapter_factory_impl::container_input_adapter_factory<ContainerType>::create(container);
-}
-
-#ifndef JSON_NO_IO
-// Special cases with fast paths
-inline file_input_adapter input_adapter(std::FILE* file)
-{
-    return file_input_adapter(file);
-}
-
-inline input_stream_adapter input_adapter(std::istream& stream)
-{
-    return input_stream_adapter(stream);
-}
-
-inline input_stream_adapter input_adapter(std::istream&& stream)
-{
-    return input_stream_adapter(stream);
-}
-#endif  // JSON_NO_IO
-
-using contiguous_bytes_input_adapter = decltype(input_adapter(std::declval<const char*>(), std::declval<const char*>()));
-
-// Null-delimited strings, and the like.
-template < typename CharT,
-           typename std::enable_if <
-               std::is_pointer<CharT>::value&&
-               !std::is_array<CharT>::value&&
-               std::is_integral<typename std::remove_pointer<CharT>::type>::value&&
-               sizeof(typename std::remove_pointer<CharT>::type) == 1,
-               int >::type = 0 >
-contiguous_bytes_input_adapter input_adapter(CharT b)
-{
-    auto length = std::strlen(reinterpret_cast<const char*>(b));
-    const auto* ptr = reinterpret_cast<const char*>(b);
-    return input_adapter(ptr, ptr + length);
-}
-
-template<typename T, std::size_t N>
-auto input_adapter(T (&array)[N]) -> decltype(input_adapter(array, array + N)) // NOLINT(cppcoreguidelines-avoid-c-arrays,hicpp-avoid-c-arrays,modernize-avoid-c-arrays)
-{
-    return input_adapter(array, array + N);
-}
-
-// This class only handles inputs of input_buffer_adapter type.
-// It's required so that expressions like {ptr, len} can be implicitly cast
-// to the correct adapter.
-class span_input_adapter
-{
-  public:
-    template < typename CharT,
-               typename std::enable_if <
-                   std::is_pointer<CharT>::value&&
-                   std::is_integral<typename std::remove_pointer<CharT>::type>::value&&
-                   sizeof(typename std::remove_pointer<CharT>::type) == 1,
-                   int >::type = 0 >
-    span_input_adapter(CharT b, std::size_t l)
-        : ia(reinterpret_cast<const char*>(b), reinterpret_cast<const char*>(b) + l) {}
-
-    template<class IteratorType,
-             typename std::enable_if<
-                 std::is_same<typename iterator_traits<IteratorType>::iterator_category, std::random_access_iterator_tag>::value,
-                 int>::type = 0>
-    span_input_adapter(IteratorType first, IteratorType last)
-        : ia(input_adapter(first, last)) {}
-
-    contiguous_bytes_input_adapter&& get()
-    {
-        return std::move(ia); // NOLINT(hicpp-move-const-arg,performance-move-const-arg)
-    }
-
-  private:
-    contiguous_bytes_input_adapter ia;
-};
-
-}  // namespace detail
-NLOHMANN_JSON_NAMESPACE_END

sample/lib/json/include/nlohmann/detail/input/json_sax.hpp

@@ -1,727 +0,0 @@
-//     __ _____ _____ _____
-//  __|  |   __|     |   | |  JSON for Modern C++
-// |  |  |__   |  |  | | | |  version 3.11.3
-// |_____|_____|_____|_|___|  https://github.com/nlohmann/json
-//
-// SPDX-FileCopyrightText: 2013-2023 Niels Lohmann <https://nlohmann.me>
-// SPDX-License-Identifier: MIT
-
-#pragma once
-
-#include <cstddef>
-#include <string> // string
-#include <utility> // move
-#include <vector> // vector
-
-#include <nlohmann/detail/exceptions.hpp>
-#include <nlohmann/detail/macro_scope.hpp>
-#include <nlohmann/detail/string_concat.hpp>
-
-NLOHMANN_JSON_NAMESPACE_BEGIN
-
-/*!
-@brief SAX interface
-
-This class describes the SAX interface used by @ref nlohmann::json::sax_parse.
-Each function is called in different situations while the input is parsed. The
-boolean return value informs the parser whether to continue processing the
-input.
-*/
-template<typename BasicJsonType>
-struct json_sax
-{
-    using number_integer_t = typename BasicJsonType::number_integer_t;
-    using number_unsigned_t = typename BasicJsonType::number_unsigned_t;
-    using number_float_t = typename BasicJsonType::number_float_t;
-    using string_t = typename BasicJsonType::string_t;
-    using binary_t = typename BasicJsonType::binary_t;
-
-    /*!
-    @brief a null value was read
-    @return whether parsing should proceed
-    */
-    virtual bool null() = 0;
-
-    /*!
-    @brief a boolean value was read
-    @param[in] val  boolean value
-    @return whether parsing should proceed
-    */
-    virtual bool boolean(bool val) = 0;
-
-    /*!
-    @brief an integer number was read
-    @param[in] val  integer value
-    @return whether parsing should proceed
-    */
-    virtual bool number_integer(number_integer_t val) = 0;
-
-    /*!
-    @brief an unsigned integer number was read
-    @param[in] val  unsigned integer value
-    @return whether parsing should proceed
-    */
-    virtual bool number_unsigned(number_unsigned_t val) = 0;
-
-    /*!
-    @brief a floating-point number was read
-    @param[in] val  floating-point value
-    @param[in] s    raw token value
-    @return whether parsing should proceed
-    */
-    virtual bool number_float(number_float_t val, const string_t& s) = 0;
-
-    /*!
-    @brief a string value was read
-    @param[in] val  string value
-    @return whether parsing should proceed
-    @note It is safe to move the passed string value.
-    */
-    virtual bool string(string_t& val) = 0;
-
-    /*!
-    @brief a binary value was read
-    @param[in] val  binary value
-    @return whether parsing should proceed
-    @note It is safe to move the passed binary value.
-    */
-    virtual bool binary(binary_t& val) = 0;
-
-    /*!
-    @brief the beginning of an object was read
-    @param[in] elements  number of object elements or -1 if unknown
-    @return whether parsing should proceed
-    @note binary formats may report the number of elements
-    */
-    virtual bool start_object(std::size_t elements) = 0;
-
-    /*!
-    @brief an object key was read
-    @param[in] val  object key
-    @return whether parsing should proceed
-    @note It is safe to move the passed string.
-    */
-    virtual bool key(string_t& val) = 0;
-
-    /*!
-    @brief the end of an object was read
-    @return whether parsing should proceed
-    */
-    virtual bool end_object() = 0;
-
-    /*!
-    @brief the beginning of an array was read
-    @param[in] elements  number of array elements or -1 if unknown
-    @return whether parsing should proceed
-    @note binary formats may report the number of elements
-    */
-    virtual bool start_array(std::size_t elements) = 0;
-
-    /*!
-    @brief the end of an array was read
-    @return whether parsing should proceed
-    */
-    virtual bool end_array() = 0;
-
-    /*!
-    @brief a parse error occurred
-    @param[in] position    the position in the input where the error occurs
-    @param[in] last_token  the last read token
-    @param[in] ex          an exception object describing the error
-    @return whether parsing should proceed (must return false)
-    */
-    virtual bool parse_error(std::size_t position,
-                             const std::string& last_token,
-                             const detail::exception& ex) = 0;
-
-    json_sax() = default;
-    json_sax(const json_sax&) = default;
-    json_sax(json_sax&&) noexcept = default;
-    json_sax& operator=(const json_sax&) = default;
-    json_sax& operator=(json_sax&&) noexcept = default;
-    virtual ~json_sax() = default;
-};
-
-namespace detail
-{
-/*!
-@brief SAX implementation to create a JSON value from SAX events
-
-This class implements the @ref json_sax interface and processes the SAX events
-to create a JSON value which makes it basically a DOM parser. The structure or
-hierarchy of the JSON value is managed by the stack `ref_stack` which contains
-a pointer to the respective array or object for each recursion depth.
-
-After successful parsing, the value that is passed by reference to the
-constructor contains the parsed value.
-
-@tparam BasicJsonType  the JSON type
-*/
-template<typename BasicJsonType>
-class json_sax_dom_parser
-{
-  public:
-    using number_integer_t = typename BasicJsonType::number_integer_t;
-    using number_unsigned_t = typename BasicJsonType::number_unsigned_t;
-    using number_float_t = typename BasicJsonType::number_float_t;
-    using string_t = typename BasicJsonType::string_t;
-    using binary_t = typename BasicJsonType::binary_t;
-
-    /*!
-    @param[in,out] r  reference to a JSON value that is manipulated while
-                       parsing
-    @param[in] allow_exceptions_  whether parse errors yield exceptions
-    */
-    explicit json_sax_dom_parser(BasicJsonType& r, const bool allow_exceptions_ = true)
-        : root(r), allow_exceptions(allow_exceptions_)
-    {}
-
-    // make class move-only
-    json_sax_dom_parser(const json_sax_dom_parser&) = delete;
-    json_sax_dom_parser(json_sax_dom_parser&&) = default; // NOLINT(hicpp-noexcept-move,performance-noexcept-move-constructor)
-    json_sax_dom_parser& operator=(const json_sax_dom_parser&) = delete;
-    json_sax_dom_parser& operator=(json_sax_dom_parser&&) = default; // NOLINT(hicpp-noexcept-move,performance-noexcept-move-constructor)
-    ~json_sax_dom_parser() = default;
-
-    bool null()
-    {
-        handle_value(nullptr);
-        return true;
-    }
-
-    bool boolean(bool val)
-    {
-        handle_value(val);
-        return true;
-    }
-
-    bool number_integer(number_integer_t val)
-    {
-        handle_value(val);
-        return true;
-    }
-
-    bool number_unsigned(number_unsigned_t val)
-    {
-        handle_value(val);
-        return true;
-    }
-
-    bool number_float(number_float_t val, const string_t& /*unused*/)
-    {
-        handle_value(val);
-        return true;
-    }
-
-    bool string(string_t& val)
-    {
-        handle_value(val);
-        return true;
-    }
-
-    bool binary(binary_t& val)
-    {
-        handle_value(std::move(val));
-        return true;
-    }
-
-    bool start_object(std::size_t len)
-    {
-        ref_stack.push_back(handle_value(BasicJsonType::value_t::object));
-
-        if (JSON_HEDLEY_UNLIKELY(len != static_cast<std::size_t>(-1) && len > ref_stack.back()->max_size()))
-        {
-            JSON_THROW(out_of_range::create(408, concat("excessive object size: ", std::to_string(len)), ref_stack.back()));
-        }
-
-        return true;
-    }
-
-    bool key(string_t& val)
-    {
-        JSON_ASSERT(!ref_stack.empty());
-        JSON_ASSERT(ref_stack.back()->is_object());
-
-        // add null at given key and store the reference for later
-        object_element = &(ref_stack.back()->m_data.m_value.object->operator[](val));
-        return true;
-    }
-
-    bool end_object()
-    {
-        JSON_ASSERT(!ref_stack.empty());
-        JSON_ASSERT(ref_stack.back()->is_object());
-
-        ref_stack.back()->set_parents();
-        ref_stack.pop_back();
-        return true;
-    }
-
-    bool start_array(std::size_t len)
-    {
-        ref_stack.push_back(handle_value(BasicJsonType::value_t::array));
-
-        if (JSON_HEDLEY_UNLIKELY(len != static_cast<std::size_t>(-1) && len > ref_stack.back()->max_size()))
-        {
-            JSON_THROW(out_of_range::create(408, concat("excessive array size: ", std::to_string(len)), ref_stack.back()));
-        }
-
-        return true;
-    }
-
-    bool end_array()
-    {
-        JSON_ASSERT(!ref_stack.empty());
-        JSON_ASSERT(ref_stack.back()->is_array());
-
-        ref_stack.back()->set_parents();
-        ref_stack.pop_back();
-        return true;
-    }
-
-    template<class Exception>
-    bool parse_error(std::size_t /*unused*/, const std::string& /*unused*/,
-                     const Exception& ex)
-    {
-        errored = true;
-        static_cast<void>(ex);
-        if (allow_exceptions)
-        {
-            JSON_THROW(ex);
-        }
-        return false;
-    }
-
-    constexpr bool is_errored() const
-    {
-        return errored;
-    }
-
-  private:
-    /*!
-    @invariant If the ref stack is empty, then the passed value will be the new
-               root.
-    @invariant If the ref stack contains a value, then it is an array or an
-               object to which we can add elements
-    */
-    template<typename Value>
-    JSON_HEDLEY_RETURNS_NON_NULL
-    BasicJsonType* handle_value(Value&& v)
-    {
-        if (ref_stack.empty())
-        {
-            root = BasicJsonType(std::forward<Value>(v));
-            return &root;
-        }
-
-        JSON_ASSERT(ref_stack.back()->is_array() || ref_stack.back()->is_object());
-
-        if (ref_stack.back()->is_array())
-        {
-            ref_stack.back()->m_data.m_value.array->emplace_back(std::forward<Value>(v));
-            return &(ref_stack.back()->m_data.m_value.array->back());
-        }
-
-        JSON_ASSERT(ref_stack.back()->is_object());
-        JSON_ASSERT(object_element);
-        *object_element = BasicJsonType(std::forward<Value>(v));
-        return object_element;
-    }
-
-    /// the parsed JSON value
-    BasicJsonType& root;
-    /// stack to model hierarchy of values
-    std::vector<BasicJsonType*> ref_stack {};
-    /// helper to hold the reference for the next object element
-    BasicJsonType* object_element = nullptr;
-    /// whether a syntax error occurred
-    bool errored = false;
-    /// whether to throw exceptions in case of errors
-    const bool allow_exceptions = true;
-};
-
-template<typename BasicJsonType>
-class json_sax_dom_callback_parser
-{
-  public:
-    using number_integer_t = typename BasicJsonType::number_integer_t;
-    using number_unsigned_t = typename BasicJsonType::number_unsigned_t;
-    using number_float_t = typename BasicJsonType::number_float_t;
-    using string_t = typename BasicJsonType::string_t;
-    using binary_t = typename BasicJsonType::binary_t;
-    using parser_callback_t = typename BasicJsonType::parser_callback_t;
-    using parse_event_t = typename BasicJsonType::parse_event_t;
-
-    json_sax_dom_callback_parser(BasicJsonType& r,
-                                 const parser_callback_t cb,
-                                 const bool allow_exceptions_ = true)
-        : root(r), callback(cb), allow_exceptions(allow_exceptions_)
-    {
-        keep_stack.push_back(true);
-    }
-
-    // make class move-only
-    json_sax_dom_callback_parser(const json_sax_dom_callback_parser&) = delete;
-    json_sax_dom_callback_parser(json_sax_dom_callback_parser&&) = default; // NOLINT(hicpp-noexcept-move,performance-noexcept-move-constructor)
-    json_sax_dom_callback_parser& operator=(const json_sax_dom_callback_parser&) = delete;
-    json_sax_dom_callback_parser& operator=(json_sax_dom_callback_parser&&) = default; // NOLINT(hicpp-noexcept-move,performance-noexcept-move-constructor)
-    ~json_sax_dom_callback_parser() = default;
-
-    bool null()
-    {
-        handle_value(nullptr);
-        return true;
-    }
-
-    bool boolean(bool val)
-    {
-        handle_value(val);
-        return true;
-    }
-
-    bool number_integer(number_integer_t val)
-    {
-        handle_value(val);
-        return true;
-    }
-
-    bool number_unsigned(number_unsigned_t val)
-    {
-        handle_value(val);
-        return true;
-    }
-
-    bool number_float(number_float_t val, const string_t& /*unused*/)
-    {
-        handle_value(val);
-        return true;
-    }
-
-    bool string(string_t& val)
-    {
-        handle_value(val);
-        return true;
-    }
-
-    bool binary(binary_t& val)
-    {
-        handle_value(std::move(val));
-        return true;
-    }
-
-    bool start_object(std::size_t len)
-    {
-        // check callback for object start
-        const bool keep = callback(static_cast<int>(ref_stack.size()), parse_event_t::object_start, discarded);
-        keep_stack.push_back(keep);
-
-        auto val = handle_value(BasicJsonType::value_t::object, true);
-        ref_stack.push_back(val.second);
-
-        // check object limit
-        if (ref_stack.back() && JSON_HEDLEY_UNLIKELY(len != static_cast<std::size_t>(-1) && len > ref_stack.back()->max_size()))
-        {
-            JSON_THROW(out_of_range::create(408, concat("excessive object size: ", std::to_string(len)), ref_stack.back()));
-        }
-
-        return true;
-    }
-
-    bool key(string_t& val)
-    {
-        BasicJsonType k = BasicJsonType(val);
-
-        // check callback for key
-        const bool keep = callback(static_cast<int>(ref_stack.size()), parse_event_t::key, k);
-        key_keep_stack.push_back(keep);
-
-        // add discarded value at given key and store the reference for later
-        if (keep && ref_stack.back())
-        {
-            object_element = &(ref_stack.back()->m_data.m_value.object->operator[](val) = discarded);
-        }
-
-        return true;
-    }
-
-    bool end_object()
-    {
-        if (ref_stack.back())
-        {
-            if (!callback(static_cast<int>(ref_stack.size()) - 1, parse_event_t::object_end, *ref_stack.back()))
-            {
-                // discard object
-                *ref_stack.back() = discarded;
-            }
-            else
-            {
-                ref_stack.back()->set_parents();
-            }
-        }
-
-        JSON_ASSERT(!ref_stack.empty());
-        JSON_ASSERT(!keep_stack.empty());
-        ref_stack.pop_back();
-        keep_stack.pop_back();
-
-        if (!ref_stack.empty() && ref_stack.back() && ref_stack.back()->is_structured())
-        {
-            // remove discarded value
-            for (auto it = ref_stack.back()->begin(); it != ref_stack.back()->end(); ++it)
-            {
-                if (it->is_discarded())
-                {
-                    ref_stack.back()->erase(it);
-                    break;
-                }
-            }
-        }
-
-        return true;
-    }
-
-    bool start_array(std::size_t len)
-    {
-        const bool keep = callback(static_cast<int>(ref_stack.size()), parse_event_t::array_start, discarded);
-        keep_stack.push_back(keep);
-
-        auto val = handle_value(BasicJsonType::value_t::array, true);
-        ref_stack.push_back(val.second);
-
-        // check array limit
-        if (ref_stack.back() && JSON_HEDLEY_UNLIKELY(len != static_cast<std::size_t>(-1) && len > ref_stack.back()->max_size()))
-        {
-            JSON_THROW(out_of_range::create(408, concat("excessive array size: ", std::to_string(len)), ref_stack.back()));
-        }
-
-        return true;
-    }
-
-    bool end_array()
-    {
-        bool keep = true;
-
-        if (ref_stack.back())
-        {
-            keep = callback(static_cast<int>(ref_stack.size()) - 1, parse_event_t::array_end, *ref_stack.back());
-            if (keep)
-            {
-                ref_stack.back()->set_parents();
-            }
-            else
-            {
-                // discard array
-                *ref_stack.back() = discarded;
-            }
-        }
-
-        JSON_ASSERT(!ref_stack.empty());
-        JSON_ASSERT(!keep_stack.empty());
-        ref_stack.pop_back();
-        keep_stack.pop_back();
-
-        // remove discarded value
-        if (!keep && !ref_stack.empty() && ref_stack.back()->is_array())
-        {
-            ref_stack.back()->m_data.m_value.array->pop_back();
-        }
-
-        return true;
-    }
-
-    template<class Exception>
-    bool parse_error(std::size_t /*unused*/, const std::string& /*unused*/,
-                     const Exception& ex)
-    {
-        errored = true;
-        static_cast<void>(ex);
-        if (allow_exceptions)
-        {
-            JSON_THROW(ex);
-        }
-        return false;
-    }
-
-    constexpr bool is_errored() const
-    {
-        return errored;
-    }
-
-  private:
-    /*!
-    @param[in] v  value to add to the JSON value we build during parsing
-    @param[in] skip_callback  whether we should skip calling the callback
-               function; this is required after start_array() and
-               start_object() SAX events, because otherwise we would call the
-               callback function with an empty array or object, respectively.
-
-    @invariant If the ref stack is empty, then the passed value will be the new
-               root.
-    @invariant If the ref stack contains a value, then it is an array or an
-               object to which we can add elements
-
-    @return pair of boolean (whether value should be kept) and pointer (to the
-            passed value in the ref_stack hierarchy; nullptr if not kept)
-    */
-    template<typename Value>
-    std::pair<bool, BasicJsonType*> handle_value(Value&& v, const bool skip_callback = false)
-    {
-        JSON_ASSERT(!keep_stack.empty());
-
-        // do not handle this value if we know it would be added to a discarded
-        // container
-        if (!keep_stack.back())
-        {
-            return {false, nullptr};
-        }
-
-        // create value
-        auto value = BasicJsonType(std::forward<Value>(v));
-
-        // check callback
-        const bool keep = skip_callback || callback(static_cast<int>(ref_stack.size()), parse_event_t::value, value);
-
-        // do not handle this value if we just learnt it shall be discarded
-        if (!keep)
-        {
-            return {false, nullptr};
-        }
-
-        if (ref_stack.empty())
-        {
-            root = std::move(value);
-            return {true, & root};
-        }
-
-        // skip this value if we already decided to skip the parent
-        // (https://github.com/nlohmann/json/issues/971#issuecomment-413678360)
-        if (!ref_stack.back())
-        {
-            return {false, nullptr};
-        }
-
-        // we now only expect arrays and objects
-        JSON_ASSERT(ref_stack.back()->is_array() || ref_stack.back()->is_object());
-
-        // array
-        if (ref_stack.back()->is_array())
-        {
-            ref_stack.back()->m_data.m_value.array->emplace_back(std::move(value));
-            return {true, & (ref_stack.back()->m_data.m_value.array->back())};
-        }
-
-        // object
-        JSON_ASSERT(ref_stack.back()->is_object());
-        // check if we should store an element for the current key
-        JSON_ASSERT(!key_keep_stack.empty());
-        const bool store_element = key_keep_stack.back();
-        key_keep_stack.pop_back();
-
-        if (!store_element)
-        {
-            return {false, nullptr};
-        }
-
-        JSON_ASSERT(object_element);
-        *object_element = std::move(value);
-        return {true, object_element};
-    }
-
-    /// the parsed JSON value
-    BasicJsonType& root;
-    /// stack to model hierarchy of values
-    std::vector<BasicJsonType*> ref_stack {};
-    /// stack to manage which values to keep
-    std::vector<bool> keep_stack {}; // NOLINT(readability-redundant-member-init)
-    /// stack to manage which object keys to keep
-    std::vector<bool> key_keep_stack {}; // NOLINT(readability-redundant-member-init)
-    /// helper to hold the reference for the next object element
-    BasicJsonType* object_element = nullptr;
-    /// whether a syntax error occurred
-    bool errored = false;
-    /// callback function
-    const parser_callback_t callback = nullptr;
-    /// whether to throw exceptions in case of errors
-    const bool allow_exceptions = true;
-    /// a discarded value for the callback
-    BasicJsonType discarded = BasicJsonType::value_t::discarded;
-};
-
-template<typename BasicJsonType>
-class json_sax_acceptor
-{
-  public:
-    using number_integer_t = typename BasicJsonType::number_integer_t;
-    using number_unsigned_t = typename BasicJsonType::number_unsigned_t;
-    using number_float_t = typename BasicJsonType::number_float_t;
-    using string_t = typename BasicJsonType::string_t;
-    using binary_t = typename BasicJsonType::binary_t;
-
-    bool null()
-    {
-        return true;
-    }
-
-    bool boolean(bool /*unused*/)
-    {
-        return true;
-    }
-
-    bool number_integer(number_integer_t /*unused*/)
-    {
-        return true;
-    }
-
-    bool number_unsigned(number_unsigned_t /*unused*/)
-    {
-        return true;
-    }
-
-    bool number_float(number_float_t /*unused*/, const string_t& /*unused*/)
-    {
-        return true;
-    }
-
-    bool string(string_t& /*unused*/)
-    {
-        return true;
-    }
-
-    bool binary(binary_t& /*unused*/)
-    {
-        return true;
-    }
-
-    bool start_object(std::size_t /*unused*/ = static_cast<std::size_t>(-1))
-    {
-        return true;
-    }
-
-    bool key(string_t& /*unused*/)
-    {
-        return true;
-    }
-
-    bool end_object()
-    {
-        return true;
-    }
-
-    bool start_array(std::size_t /*unused*/ = static_cast<std::size_t>(-1))
-    {
-        return true;
-    }
-
-    bool end_array()
-    {
-        return true;
-    }
-
-    bool parse_error(std::size_t /*unused*/, const std::string& /*unused*/, const detail::exception& /*unused*/)
-    {
-        return false;
-    }
-};
-
-}  // namespace detail
-NLOHMANN_JSON_NAMESPACE_END