rmontanana/BayesNet
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Update project version to 1.1.1

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Fix CMakeLists and different configurations to fix vcpkg build & installation
Fix sample build
Update CHANGELOG
This commit is contained in:
Ricardo Montañana Gómez
2025-05-08 12:33:11 +02:00
parent 5f95117dd4
commit 7f6f49b3d0
11 changed files with 125 additions and 97 deletions
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2
CHANGELOG.md
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@@ -11,7 +11,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
### Internal
- Add changes to .clang-format to ajust to vscode format style thanks to <https://clang-format-configurator.site/>
- Add changes to .clang-format to adjust to vscode format style thanks to <https://clang-format-configurator.site/>
- Remove all the dependencies as git submodules and add them as vcpkg dependencies.
- Fix the dependencies versions for this specific BayesNet version.

135
CMakeLists.txt
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@@ -1,21 +1,19 @@
cmake_minimum_required(VERSION 3.20)
cmake_minimum_required(VERSION 3.27)
project(BayesNet
VERSION 1.1.0
project(bayesnet
VERSION 1.1.1
DESCRIPTION "Bayesian Network and basic classifiers Library."
HOMEPAGE_URL "https://github.com/rmontanana/bayesnet"
LANGUAGES CXX
)
if (CODE_COVERAGE AND NOT ENABLE_TESTING)
MESSAGE(FATAL_ERROR "Code coverage requires testing enabled")
endif (CODE_COVERAGE AND NOT ENABLE_TESTING)
set(CMAKE_CXX_STANDARD 17)
cmake_policy(SET CMP0135 NEW)
find_package(Torch REQUIRED)
if (POLICY CMP0135)
cmake_policy(SET CMP0135 NEW)
endif ()
find_package(Torch CONFIG REQUIRED)
find_package(fimdlp CONFIG REQUIRED)
find_package(nlohmann_json CONFIG REQUIRED)
find_package(folding CONFIG REQUIRED)
# Global CMake variables
# ----------------------
@@ -33,76 +31,83 @@ endif()
# Options
# -------
option(ENABLE_CLANG_TIDY "Enable to add clang tidy." OFF)
option(ENABLE_TESTING "Unit testing build" OFF)
option(CODE_COVERAGE "Collect coverage from test library" OFF)
option(INSTALL_GTEST "Enable installation of googletest." OFF)
option(ENABLE_CLANG_TIDY "Enable to add clang tidy" OFF)
option(ENABLE_TESTING "Unit testing build" OFF)
option(CODE_COVERAGE "Collect coverage from test library" OFF)
option(INSTALL_GTEST "Enable installation of googletest" OFF)
# CMakes modules
# --------------
set(CMAKE_MODULE_PATH ${CMAKE_CURRENT_SOURCE_DIR}/cmake/modules ${CMAKE_MODULE_PATH})
if (CMAKE_BUILD_TYPE STREQUAL "Debug")
MESSAGE("Debug mode")
set(ENABLE_TESTING ON)
set(CODE_COVERAGE ON)
endif (CMAKE_BUILD_TYPE STREQUAL "Debug")
get_property(LANGUAGES GLOBAL PROPERTY ENABLED_LANGUAGES)
message(STATUS "Languages=${LANGUAGES}")
if (CODE_COVERAGE)
enable_testing()
include(CodeCoverage)
MESSAGE(STATUS "Code coverage enabled")
SET(GCC_COVERAGE_LINK_FLAGS " ${GCC_COVERAGE_LINK_FLAGS} -lgcov --coverage")
endif (CODE_COVERAGE)
add_subdirectory(config)
if (ENABLE_CLANG_TIDY)
include(StaticAnalyzers) # clang-tidy
include(StaticAnalyzers) # clang-tidy
endif (ENABLE_CLANG_TIDY)
# External libraries - dependencies of BayesNet
# ---------------------------------------------
# Add the library
# ---------------
include_directories(
${bayesnet_SOURCE_DIR}
${CMAKE_BINARY_DIR}/configured_files/include
)
find_package(Torch CONFIG REQUIRED)
find_package(fimdlp CONFIG REQUIRED)
find_package(nlohmann_json CONFIG REQUIRED)
find_package(folding CONFIG REQUIRED)
file(GLOB_RECURSE Sources "bayesnet/*.cc")
# Subdirectories
# --------------
add_subdirectory(config)
add_subdirectory(bayesnet)
add_library(bayesnet ${Sources})
target_link_libraries(bayesnet fimdlp::fimdlp folding::folding "${TORCH_LIBRARIES}")
# Testing
# -------
if (CMAKE_BUILD_TYPE STREQUAL "Debug")
MESSAGE("Debug mode")
set(ENABLE_TESTING ON)
set(CODE_COVERAGE ON)
endif (CMAKE_BUILD_TYPE STREQUAL "Debug")
if (ENABLE_TESTING)
MESSAGE(STATUS "Testing enabled")
find_package(Catch2 CONFIG REQUIRED)
include(CTest)
add_subdirectory(tests)
MESSAGE(STATUS "Testing enabled")
find_package(Catch2 CONFIG REQUIRED)
find_package(arff-files CONFIG REQUIRED)
enable_testing()
include(CTest)
add_subdirectory(tests)
else(ENABLE_TESTING)
message("Release mode")
endif (ENABLE_TESTING)
# Installation
# ------------
install(TARGETS BayesNet
include(CMakePackageConfigHelpers)
write_basic_package_version_file(
"${CMAKE_CURRENT_BINARY_DIR}/bayesnetConfigVersion.cmake"
VERSION ${PROJECT_VERSION}
COMPATIBILITY AnyNewerVersion
)
configure_package_config_file(
${CMAKE_CURRENT_SOURCE_DIR}/bayesnetConfig.cmake.in
"${CMAKE_CURRENT_BINARY_DIR}/bayesnetConfig.cmake"
INSTALL_DESTINATION share/bayesnet)
install(TARGETS bayesnet
EXPORT bayesnetTargets
ARCHIVE DESTINATION lib
LIBRARY DESTINATION lib
CONFIGURATIONS Release)
install(DIRECTORY bayesnet/ DESTINATION include/bayesnet FILES_MATCHING CONFIGURATIONS Release PATTERN "*.h")
install(FILES ${CMAKE_BINARY_DIR}/configured_files/include/bayesnet/config.h DESTINATION include/bayesnet CONFIGURATIONS Release)
# Documentation
# -------------
find_package(Doxygen)
if (Doxygen_FOUND)
set(DOC_DIR ${CMAKE_CURRENT_SOURCE_DIR}/docs)
set(doxyfile_in ${DOC_DIR}/Doxyfile.in)
set(doxyfile ${DOC_DIR}/Doxyfile)
configure_file(${doxyfile_in} ${doxyfile} @ONLY)
doxygen_add_docs(doxygen
WORKING_DIRECTORY ${DOC_DIR}
CONFIG_FILE ${doxyfile})
else (Doxygen_FOUND)
MESSAGE("* Doxygen not found")
endif (Doxygen_FOUND)
install(DIRECTORY bayesnet/
DESTINATION include/bayesnet
FILES_MATCHING
CONFIGURATIONS Release
PATTERN "*.h")
install(FILES ${CMAKE_BINARY_DIR}/configured_files/include/bayesnet/config.h
DESTINATION include/bayesnet
CONFIGURATIONS Release)
install(EXPORT bayesnetTargets
FILE bayesnetTargets.cmake
NAMESPACE bayesnet::
DESTINATION share/bayesnet)
install(FILES
"${CMAKE_CURRENT_BINARY_DIR}/bayesnetConfig.cmake"
"${CMAKE_CURRENT_BINARY_DIR}/bayesnetConfigVersion.cmake"
DESTINATION share/bayesnet
)

11
Makefile
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@@ -5,7 +5,7 @@ SHELL := /bin/bash
f_release = build_Release
f_debug = build_Debug
f_diagrams = diagrams
app_targets = BayesNet
app_targets = bayesnet
test_targets = TestBayesNet
clang-uml = clang-uml
plantuml = plantuml
@@ -86,10 +86,13 @@ init: ## Initialize the project installing dependencies
clean: ## Clean the project
@echo ">>> Cleaning the project..."
@if test -d build_Debug ; then echo "- Deleting build_Debug folder" ; rm -rf build_Debug; fi
@if test -d build_Release ; then echo "- Deleting build_Release folder" ; rm -rf build_Release; fi
@if test -f CMakeCache.txt ; then echo "- Deleting CMakeCache.txt"; rm -f CMakeCache.txt; fi
@if test -d vcpkg_installed ; then echo "- Deleting vcpkg_installed folder" ; rm -rf vcpkg_installed; fi
@for folder in $(f_release) $(f_debug) vpcpkg_installed install_test ; do \
if test -d "$$folder" ; then \
echo "- Deleting $$folder folder" ; \
rm -rf "$$folder"; \
fi; \
done
@$(MAKE) clean-test
@echo ">>> Done";

4
bayesnetConfig.cmake.in Normal file
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@@ -0,0 +1,4 @@
@PACKAGE_INIT@
include("${CMAKE_CURRENT_LIST_DIR}/bayesnetTargets.cmake")

2
config/config.h.in
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@@ -11,4 +11,4 @@ static constexpr std::string_view project_name = "@PROJECT_NAME@";
static constexpr std::string_view project_version = "@PROJECT_VERSION@";
static constexpr std::string_view project_description = "@PROJECT_DESCRIPTION@";
static constexpr std::string_view git_sha = "@GIT_SHA@";
static constexpr std::string_view data_path = "@BayesNet_SOURCE_DIR@/tests/data/";
static constexpr std::string_view data_path = "@bayesnet_SOURCE_DIR@/tests/data/";

8
sample/CMakeLists.txt
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@@ -1,15 +1,16 @@
cmake_minimum_required(VERSION 3.20)
project(bayesnet_sample)
project(bayesnet_sample VERSION 0.1.0 LANGUAGES CXX)
set(CMAKE_CXX_STANDARD 17)
set(CMAKE_BUILD_TYPE Release)
find_package(Torch CONFIG REQUIRED)
find_package(bayesnet CONFIG REQUIRED)
find_package(fimdlp CONFIG REQUIRED)
find_package(folding CONFIG REQUIRED)
find_package(arff-files CONFIG REQUIRED)
find_package(nlohman_json CONFIG REQUIRED)
find_package(bayesnet CONFIG REQUIRED)
add_executable(bayesnet_sample sample.cc)
target_link_libraries(bayesnet_sample PRIVATE
@@ -17,6 +18,5 @@ target_link_libraries(bayesnet_sample PRIVATE
arff-files::arff-files
"${TORCH_LIBRARIES}"
bayesnet::bayesnet
nlohmann_json::nlohmann_json
folding::folding
)

18
sample/vcpkg-configuration.json
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@@ -1,21 +1,21 @@
{
"default-registry": {
"kind": "git",
"baseline": "760bfd0c8d7c89ec640aec4df89418b7c2745605",
"repository": "https://github.com/microsoft/vcpkg"
},
"registries": [
{
"kind": "git",
"repository": "https://github.com/rmontanana/vcpkg-stash",
"baseline": "393efa4e74e053b6f02c4ab03738c8fe796b28e5",
"baseline": "1ea69243c0e8b0de77c9d1dd6e1d7593ae7f3627",
"packages": [
"folding",
"bayesnet",
"arff-files",
"bayesnet",
"fimdlp",
"folding",
"libtorch-bin"
]
}
],
"default-registry": {
"kind": "git",
"repository": "https://github.com/microsoft/vcpkg",
"baseline": "760bfd0c8d7c89ec640aec4df89418b7c2745605"
}
]
}

29
sample/vcpkg.json
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@@ -2,11 +2,32 @@
"name": "sample-project",
"version-string": "0.1.0",
"dependencies": [
"bayesnet",
"folding",
"arff-files",
"fimdlp",
"nlohmann-json",
"libtorch-bin"
"libtorch-bin",
"folding",
"bayesnet"
],
"overrides": [
{
"name": "arff-files",
"version": "1.1.0"
},
{
"name": "fimdlp",
"version": "2.0.1"
},
{
"name": "libtorch-bin",
"version": "2.7.0"
},
{
"name": "bayesnet",
"version": "1.1.1"
},
{
"name": "folding",
"version": "1.1.1"
}
]
}

9
tests/CMakeLists.txt
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@@ -1,18 +1,13 @@
if(ENABLE_TESTING)
include_directories(
${BayesNet_SOURCE_DIR}/tests/lib/Files
${BayesNet_SOURCE_DIR}/lib/folding
${BayesNet_SOURCE_DIR}/lib/mdlp/src
${BayesNet_SOURCE_DIR}/lib/log
${BayesNet_SOURCE_DIR}/lib/json/include
${BayesNet_SOURCE_DIR}
${CMAKE_BINARY_DIR}/configured_files/include
)
file(GLOB_RECURSE BayesNet_SOURCES "${BayesNet_SOURCE_DIR}/bayesnet/*.cc")
file(GLOB_RECURSE BayesNet_SOURCES "${bayesnet_SOURCE_DIR}/bayesnet/*.cc")
add_executable(TestBayesNet TestBayesNetwork.cc TestBayesNode.cc TestBayesClassifier.cc TestXSPnDE.cc TestXBA2DE.cc
TestBayesModels.cc TestBayesMetrics.cc TestFeatureSelection.cc TestBoostAODE.cc TestXBAODE.cc TestA2DE.cc
TestUtils.cc TestBayesEnsemble.cc TestModulesVersions.cc TestBoostA2DE.cc TestMST.cc TestXSPODE.cc ${BayesNet_SOURCES})
target_link_libraries(TestBayesNet PUBLIC "${TORCH_LIBRARIES}" fimdlp PRIVATE Catch2::Catch2WithMain)
target_link_libraries(TestBayesNet PUBLIC "${TORCH_LIBRARIES}" fimdlp::fimdlp PRIVATE Catch2::Catch2WithMain)
add_test(NAME BayesNetworkTest COMMAND TestBayesNet)
add_test(NAME A2DE COMMAND TestBayesNet "[A2DE]")
add_test(NAME BoostA2DE COMMAND TestBayesNet "[BoostA2DE]")

2
tests/TestBayesModels.cc
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@@ -20,7 +20,7 @@
#include "bayesnet/ensembles/AODELd.h"
#include "bayesnet/ensembles/BoostAODE.h"
const std::string ACTUAL_VERSION = "1.1.0";
const std::string ACTUAL_VERSION = "1.1.1";
TEST_CASE("Test Bayesian Classifiers score & version", "[Models]")
{

2
vcpkg-configuration.json
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@@ -8,7 +8,7 @@
{
"kind": "git",
"repository": "https://github.com/rmontanana/vcpkg-stash",
"baseline": "393efa4e74e053b6f02c4ab03738c8fe796b28e5",
"baseline": "1ea69243c0e8b0de77c9d1dd6e1d7593ae7f3627",
"packages": [
"arff-files",
"fimdlp",