Add Linux specific options to compile

.clang-uml

@@ -1,19 +1,31 @@
 compilation_database_dir: build
 output_directory: puml
 diagrams:
-  myproject_class:
+  BayesNet:
     type: class
     glob:
-      - src/bayesnet/*.cc
+      - src/BayesNet/*.cc
-      - src/platform/*.cc
+      - src/Platform/*.cc
     using_namespace: bayesnet
     include:
       namespaces:
         - bayesnet
         - platform
-    exclude:
-      namespaces:
-        - myproject::detail
     plantuml:
       after:
-        - 'note left of {{ alias("MyProjectMain") }}: Main class of myproject library.'
+        - "note left of {{ alias(\"MyProjectMain\") }}: Main class of myproject library."
+  sequence:
+    type: sequence
+    glob:
+      - src/Platform/main.cc
+    combine_free_functions_into_file_participants: true
+    using_namespace:
+      - std
+      - bayesnet
+      - platform
+    include:
+      paths:
+        - src/BayesNet
+        - src/Platform
+    start_from:
+      - function: main(int,const char **)

.gitignore

@@ -35,3 +35,4 @@ build/
 *.dSYM/**
 cmake-build*/**
 .idea
+puml/**

CMakeLists.txt

@@ -30,7 +30,7 @@ set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${TORCH_CXX_FLAGS}")
 option(ENABLE_CLANG_TIDY "Enable to add clang tidy."              OFF)
 option(ENABLE_TESTING "Unit testing build"                        OFF)
 option(CODE_COVERAGE "Collect coverage from test library"         OFF)
-
+SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -pthread")
 # CMakes modules
 # --------------
 set(CMAKE_MODULE_PATH ${CMAKE_CURRENT_SOURCE_DIR}/cmake/modules ${CMAKE_MODULE_PATH})

Makefile

@@ -32,6 +32,9 @@ clean: ## Clean the debug info
 	find . -name "*.gcda" -print0 | xargs -0 rm
 	@echo ">>> Done";
 
+clang-uml: ## Create uml class and sequence diagrams
+	clang-uml -p --add-compile-flag -I /usr/lib/gcc/x86_64-redhat-linux/8/include/
+
 debug: ## Build a debug version of the project
 	@echo ">>> Building Debug BayesNet ...";
 	@if [ -d ./build ]; then rm -rf ./build; fi

TAN_iris.dot

@@ -1,12 +0,0 @@
-digraph BayesNet {
-label=<BayesNet >
-fontsize=30
-fontcolor=blue
-labelloc=t
-layout=circo
- class [shape=circle, fontcolor=red, fillcolor=lightblue, style=filled ] 
- class -> sepallength class -> sepalwidth class -> petallength class -> petalwidth petallength [shape=circle] 
- petallength -> sepallength petalwidth [shape=circle] 
- sepallength [shape=circle] 
- sepallength -> sepalwidth sepalwidth [shape=circle] 
- sepalwidth -> petalwidth }

sample/sample.cc

@@ -10,7 +10,7 @@
 #include "Folding.h"
 #include "Models.h"
 #include "modelRegister.h"
-
+#include <fstream>
 
 using namespace std;
 
@@ -195,11 +195,11 @@ int main(int argc, char** argv)
         Xt.index_put_({ i, "..." }, torch::tensor(Xd[i], torch::kInt32));
     }
     float total_score = 0, total_score_train = 0, score_train, score_test;
-    Fold* fold;
+    platform::Fold* fold;
     if (stratified)
-        fold = new StratifiedKFold(nFolds, y, seed);
+        fold = new platform::StratifiedKFold(nFolds, y, seed);
     else
-        fold = new KFold(nFolds, y.size(), seed);
+        fold = new platform::KFold(nFolds, y.size(), seed);
     for (auto i = 0; i < nFolds; ++i) {
         auto [train, test] = fold->getFold(i);
         cout << "Fold: " << i + 1 << endl;

src/Platform/Datasets.cc

@@ -1,6 +1,7 @@
 #include "Datasets.h"
 #include "platformUtils.h"
 #include "ArffFiles.h"
+#include <fstream>
 namespace platform {
     void Datasets::load()
     {

src/Platform/Experiment.cc

@@ -2,7 +2,7 @@
 #include "Datasets.h"
 #include "Models.h"
 #include "ReportConsole.h"
-
+#include <fstream>
 namespace platform {
     using json = nlohmann::json;
     string get_date()

src/Platform/Folding.cc

@@ -1,6 +1,7 @@
 #include "Folding.h"
 #include <algorithm>
 #include <map>
+namespace platform {
     Fold::Fold(int k, int n, int seed) : k(k), n(n), seed(seed)
     {
         random_device rd;
@@ -93,3 +94,4 @@ pair<vector<int>, vector<int>> StratifiedKFold::getFold(int nFold)
         }
         return { train_indices, test_indices };
     }
+}

src/Platform/Folding.h

@@ -4,7 +4,7 @@
 #include <vector>
 #include <random> 
 using namespace std;
-
+namespace platform {
     class Fold {
     protected:
         int k;
@@ -34,4 +34,5 @@ public:
         StratifiedKFold(int k, torch::Tensor& y, int seed = -1);
         pair<vector<int>, vector<int>> getFold(int nFold) override;
     };
+}
 #endif