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< title > LCOV - coverage.info - bayesnet/network/Node.cc< / title >
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< tr > < td class = "title" > LCOV - code coverage report< / td > < / tr >
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< td width = "10%" class = "headerItem" > Current view:< / td >
< td width = "10%" class = "headerValue" > < a href = "../../index.html" > top level< / a > - < a href = "index.html" > bayesnet/network< / a > - Node.cc< span style = "font-size: 80%;" > (source / < a href = "Node.cc.func-c.html" > functions< / a > )< / span > < / td >
< td width = "5%" > < / td >
< td width = "5%" > < / td >
< td width = "5%" class = "headerCovTableHead" > Coverage< / td >
< td width = "5%" class = "headerCovTableHead" title = "Covered + Uncovered code" > Total< / td >
< td width = "5%" class = "headerCovTableHead" title = "Exercised code only" > Hit< / td >
< / tr >
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< td class = "headerItem" > Test:< / td >
< td class = "headerValue" > coverage.info< / td >
< td > < / td >
< td class = "headerItem" > Lines:< / td >
< td class = "headerCovTableEntryHi" > 95.5 %< / td >
< td class = "headerCovTableEntry" > 88< / td >
< td class = "headerCovTableEntry" > 84< / td >
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< td class = "headerItem" > Test Date:< / td >
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< td class = "headerValue" > 2024-04-30 13:59:18< / td >
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< td > < / td >
< td class = "headerItem" > Functions:< / td >
< td class = "headerCovTableEntryHi" > 100.0 %< / td >
< td class = "headerCovTableEntry" > 20< / td >
< td class = "headerCovTableEntry" > 20< / td >
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< pre class = "sourceHeading" > Line data Source code< / pre >
< pre class = "source" >
< span id = "L1" > < span class = "lineNum" > 1< / span > : // ***************************************************************< / span >
< span id = "L2" > < span class = "lineNum" > 2< / span > : // SPDX-FileCopyrightText: Copyright 2024 Ricardo Montañana Gómez< / span >
< span id = "L3" > < span class = "lineNum" > 3< / span > : // SPDX-FileType: SOURCE< / span >
< span id = "L4" > < span class = "lineNum" > 4< / span > : // SPDX-License-Identifier: MIT< / span >
< span id = "L5" > < span class = "lineNum" > 5< / span > : // ***************************************************************< / span >
< span id = "L6" > < span class = "lineNum" > 6< / span > : < / span >
< span id = "L7" > < span class = "lineNum" > 7< / span > : #include " Node.h" < / span >
< span id = "L8" > < span class = "lineNum" > 8< / span > : < / span >
< span id = "L9" > < span class = "lineNum" > 9< / span > : namespace bayesnet {< / span >
< span id = "L10" > < span class = "lineNum" > 10< / span > : < / span >
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< span id = "L11" > < span class = "lineNum" > 11< / span > < span class = "tlaGNC tlaBgGNC" > 40176 : Node::Node(const std::string& name)< / span > < / span >
< span id = "L12" > < span class = "lineNum" > 12< / span > < span class = "tlaGNC" > 40176 : : name(name), numStates(0), cpTable(torch::Tensor()), parents(std::vector< Node*> ()), children(std::vector< Node*> ())< / span > < / span >
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< span id = "L13" > < span class = "lineNum" > 13< / span > : {< / span >
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< span id = "L14" > < span class = "lineNum" > 14< / span > < span class = "tlaGNC" > 40176 : }< / span > < / span >
< span id = "L15" > < span class = "lineNum" > 15< / span > < span class = "tlaGNC" > 6 : void Node::clear()< / span > < / span >
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< span id = "L16" > < span class = "lineNum" > 16< / span > : {< / span >
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< span id = "L17" > < span class = "lineNum" > 17< / span > < span class = "tlaGNC" > 6 : parents.clear();< / span > < / span >
< span id = "L18" > < span class = "lineNum" > 18< / span > < span class = "tlaGNC" > 6 : children.clear();< / span > < / span >
< span id = "L19" > < span class = "lineNum" > 19< / span > < span class = "tlaGNC" > 6 : cpTable = torch::Tensor();< / span > < / span >
< span id = "L20" > < span class = "lineNum" > 20< / span > < span class = "tlaGNC" > 6 : dimensions.clear();< / span > < / span >
< span id = "L21" > < span class = "lineNum" > 21< / span > < span class = "tlaGNC" > 6 : numStates = 0;< / span > < / span >
< span id = "L22" > < span class = "lineNum" > 22< / span > < span class = "tlaGNC" > 6 : }< / span > < / span >
< span id = "L23" > < span class = "lineNum" > 23< / span > < span class = "tlaGNC" > 205208016 : std::string Node::getName() const< / span > < / span >
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< span id = "L24" > < span class = "lineNum" > 24< / span > : {< / span >
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< span id = "L25" > < span class = "lineNum" > 25< / span > < span class = "tlaGNC" > 205208016 : return name;< / span > < / span >
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< span id = "L26" > < span class = "lineNum" > 26< / span > : }< / span >
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< span id = "L27" > < span class = "lineNum" > 27< / span > < span class = "tlaGNC" > 74892 : void Node::addParent(Node* parent)< / span > < / span >
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< span id = "L28" > < span class = "lineNum" > 28< / span > : {< / span >
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< span id = "L29" > < span class = "lineNum" > 29< / span > < span class = "tlaGNC" > 74892 : parents.push_back(parent);< / span > < / span >
< span id = "L30" > < span class = "lineNum" > 30< / span > < span class = "tlaGNC" > 74892 : }< / span > < / span >
< span id = "L31" > < span class = "lineNum" > 31< / span > < span class = "tlaGNC" > 18 : void Node::removeParent(Node* parent)< / span > < / span >
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< span id = "L32" > < span class = "lineNum" > 32< / span > : {< / span >
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< span id = "L33" > < span class = "lineNum" > 33< / span > < span class = "tlaGNC" > 18 : parents.erase(std::remove(parents.begin(), parents.end(), parent), parents.end());< / span > < / span >
< span id = "L34" > < span class = "lineNum" > 34< / span > < span class = "tlaGNC" > 18 : }< / span > < / span >
< span id = "L35" > < span class = "lineNum" > 35< / span > < span class = "tlaGNC" > 18 : void Node::removeChild(Node* child)< / span > < / span >
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< span id = "L36" > < span class = "lineNum" > 36< / span > : {< / span >
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< span id = "L37" > < span class = "lineNum" > 37< / span > < span class = "tlaGNC" > 18 : children.erase(std::remove(children.begin(), children.end(), child), children.end());< / span > < / span >
< span id = "L38" > < span class = "lineNum" > 38< / span > < span class = "tlaGNC" > 18 : }< / span > < / span >
< span id = "L39" > < span class = "lineNum" > 39< / span > < span class = "tlaGNC" > 74904 : void Node::addChild(Node* child)< / span > < / span >
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< span id = "L40" > < span class = "lineNum" > 40< / span > : {< / span >
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< span id = "L41" > < span class = "lineNum" > 41< / span > < span class = "tlaGNC" > 74904 : children.push_back(child);< / span > < / span >
< span id = "L42" > < span class = "lineNum" > 42< / span > < span class = "tlaGNC" > 74904 : }< / span > < / span >
< span id = "L43" > < span class = "lineNum" > 43< / span > < span class = "tlaGNC" > 7608 : std::vector< Node*> & Node::getParents()< / span > < / span >
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< span id = "L44" > < span class = "lineNum" > 44< / span > : {< / span >
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< span id = "L45" > < span class = "lineNum" > 45< / span > < span class = "tlaGNC" > 7608 : return parents;< / span > < / span >
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< span id = "L46" > < span class = "lineNum" > 46< / span > : }< / span >
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< span id = "L47" > < span class = "lineNum" > 47< / span > < span class = "tlaGNC" > 100284 : std::vector< Node*> & Node::getChildren()< / span > < / span >
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< span id = "L48" > < span class = "lineNum" > 48< / span > : {< / span >
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< span id = "L49" > < span class = "lineNum" > 49< / span > < span class = "tlaGNC" > 100284 : return children;< / span > < / span >
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< span id = "L50" > < span class = "lineNum" > 50< / span > : }< / span >
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< span id = "L51" > < span class = "lineNum" > 51< / span > < span class = "tlaGNC" > 81552 : int Node::getNumStates() const< / span > < / span >
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< span id = "L52" > < span class = "lineNum" > 52< / span > : {< / span >
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< span id = "L53" > < span class = "lineNum" > 53< / span > < span class = "tlaGNC" > 81552 : return numStates;< / span > < / span >
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< span id = "L54" > < span class = "lineNum" > 54< / span > : }< / span >
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< span id = "L55" > < span class = "lineNum" > 55< / span > < span class = "tlaGNC" > 42582 : void Node::setNumStates(int numStates)< / span > < / span >
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< span id = "L56" > < span class = "lineNum" > 56< / span > : {< / span >
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< span id = "L57" > < span class = "lineNum" > 57< / span > < span class = "tlaGNC" > 42582 : this-> numStates = numStates;< / span > < / span >
< span id = "L58" > < span class = "lineNum" > 58< / span > < span class = "tlaGNC" > 42582 : }< / span > < / span >
< span id = "L59" > < span class = "lineNum" > 59< / span > < span class = "tlaGNC" > 630 : torch::Tensor& Node::getCPT()< / span > < / span >
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< span id = "L60" > < span class = "lineNum" > 60< / span > : {< / span >
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< span id = "L61" > < span class = "lineNum" > 61< / span > < span class = "tlaGNC" > 630 : return cpTable;< / span > < / span >
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< span id = "L62" > < span class = "lineNum" > 62< / span > : }< / span >
< span id = "L63" > < span class = "lineNum" > 63< / span > : /*< / span >
< span id = "L64" > < span class = "lineNum" > 64< / span > : The MinFill criterion is a heuristic for variable elimination.< / span >
< span id = "L65" > < span class = "lineNum" > 65< / span > : The variable that minimizes the number of edges that need to be added to the graph to make it triangulated.< / span >
< span id = "L66" > < span class = "lineNum" > 66< / span > : This is done by counting the number of edges that need to be added to the graph if the variable is eliminated.< / span >
< span id = "L67" > < span class = "lineNum" > 67< / span > : The variable with the minimum number of edges is chosen.< / span >
< span id = "L68" > < span class = "lineNum" > 68< / span > : Here this is done computing the length of the combinations of the node neighbors taken 2 by 2.< / span >
< span id = "L69" > < span class = "lineNum" > 69< / span > : */< / span >
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< span id = "L70" > < span class = "lineNum" > 70< / span > < span class = "tlaGNC" > 30 : unsigned Node::minFill()< / span > < / span >
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< span id = "L71" > < span class = "lineNum" > 71< / span > : {< / span >
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< span id = "L72" > < span class = "lineNum" > 72< / span > < span class = "tlaGNC" > 30 : std::unordered_set< std::string> neighbors;< / span > < / span >
< span id = "L73" > < span class = "lineNum" > 73< / span > < span class = "tlaGNC" > 78 : for (auto child : children) {< / span > < / span >
< span id = "L74" > < span class = "lineNum" > 74< / span > < span class = "tlaGNC" > 48 : neighbors.emplace(child-> getName());< / span > < / span >
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< span id = "L75" > < span class = "lineNum" > 75< / span > : }< / span >
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< span id = "L76" > < span class = "lineNum" > 76< / span > < span class = "tlaGNC" > 72 : for (auto parent : parents) {< / span > < / span >
< span id = "L77" > < span class = "lineNum" > 77< / span > < span class = "tlaGNC" > 42 : neighbors.emplace(parent-> getName());< / span > < / span >
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< span id = "L78" > < span class = "lineNum" > 78< / span > : }< / span >
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< span id = "L79" > < span class = "lineNum" > 79< / span > < span class = "tlaGNC" > 30 : auto source = std::vector< std::string> (neighbors.begin(), neighbors.end());< / span > < / span >
< span id = "L80" > < span class = "lineNum" > 80< / span > < span class = "tlaGNC" > 60 : return combinations(source).size();< / span > < / span >
< span id = "L81" > < span class = "lineNum" > 81< / span > < span class = "tlaGNC" > 30 : }< / span > < / span >
< span id = "L82" > < span class = "lineNum" > 82< / span > < span class = "tlaGNC" > 30 : std::vector< std::pair< std::string, std::string> > Node::combinations(const std::vector< std::string> & source)< / span > < / span >
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< span id = "L83" > < span class = "lineNum" > 83< / span > : {< / span >
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< span id = "L84" > < span class = "lineNum" > 84< / span > < span class = "tlaGNC" > 30 : std::vector< std::pair< std::string, std::string> > result;< / span > < / span >
< span id = "L85" > < span class = "lineNum" > 85< / span > < span class = "tlaGNC" > 120 : for (int i = 0; i < source.size(); ++i) {< / span > < / span >
< span id = "L86" > < span class = "lineNum" > 86< / span > < span class = "tlaGNC" > 90 : std::string temp = source[i];< / span > < / span >
< span id = "L87" > < span class = "lineNum" > 87< / span > < span class = "tlaGNC" > 186 : for (int j = i + 1; j < source.size(); ++j) {< / span > < / span >
< span id = "L88" > < span class = "lineNum" > 88< / span > < span class = "tlaGNC" > 96 : result.push_back({ temp, source[j] });< / span > < / span >
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< span id = "L89" > < span class = "lineNum" > 89< / span > : }< / span >
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< span id = "L90" > < span class = "lineNum" > 90< / span > < span class = "tlaGNC" > 90 : }< / span > < / span >
< span id = "L91" > < span class = "lineNum" > 91< / span > < span class = "tlaGNC" > 30 : return result;< / span > < / span >
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< span id = "L92" > < span class = "lineNum" > 92< / span > < span class = "tlaUNC tlaBgUNC" > 0 : }< / span > < / span >
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< span id = "L93" > < span class = "lineNum" > 93< / span > < span class = "tlaGNC tlaBgGNC" > 42582 : void Node::computeCPT(const torch::Tensor& dataset, const std::vector< std::string> & features, const double laplaceSmoothing, const torch::Tensor& weights)< / span > < / span >
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< span id = "L94" > < span class = "lineNum" > 94< / span > : {< / span >
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< span id = "L95" > < span class = "lineNum" > 95< / span > < span class = "tlaGNC" > 42582 : dimensions.clear();< / span > < / span >
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< span id = "L96" > < span class = "lineNum" > 96< / span > : // Get dimensions of the CPT< / span >
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< span id = "L97" > < span class = "lineNum" > 97< / span > < span class = "tlaGNC" > 42582 : dimensions.push_back(numStates);< / span > < / span >
< span id = "L98" > < span class = "lineNum" > 98< / span > < span class = "tlaGNC" > 121662 : transform(parents.begin(), parents.end(), back_inserter(dimensions), [](const auto& parent) { return parent-> getNumStates(); });< / span > < / span >
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< span id = "L99" > < span class = "lineNum" > 99< / span > : < / span >
< span id = "L100" > < span class = "lineNum" > 100< / span > : // Create a tensor of zeros with the dimensions of the CPT< / span >
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< span id = "L101" > < span class = "lineNum" > 101< / span > < span class = "tlaGNC" > 42582 : cpTable = torch::zeros(dimensions, torch::kFloat) + laplaceSmoothing;< / span > < / span >
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< span id = "L102" > < span class = "lineNum" > 102< / span > : // Fill table with counts< / span >
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< span id = "L103" > < span class = "lineNum" > 103< / span > < span class = "tlaGNC" > 42582 : auto pos = find(features.begin(), features.end(), name);< / span > < / span >
< span id = "L104" > < span class = "lineNum" > 104< / span > < span class = "tlaGNC" > 42582 : if (pos == features.end()) {< / span > < / span >
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< span id = "L105" > < span class = "lineNum" > 105< / span > < span class = "tlaUNC tlaBgUNC" > 0 : throw std::logic_error(" Feature " + name + " not found in dataset" );< / span > < / span >
< span id = "L106" > < span class = "lineNum" > 106< / span > : }< / span >
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< span id = "L107" > < span class = "lineNum" > 107< / span > < span class = "tlaGNC tlaBgGNC" > 42582 : int name_index = pos - features.begin();< / span > < / span >
< span id = "L108" > < span class = "lineNum" > 108< / span > < span class = "tlaGNC" > 15411546 : for (int n_sample = 0; n_sample < dataset.size(1); ++n_sample) {< / span > < / span >
< span id = "L109" > < span class = "lineNum" > 109< / span > < span class = "tlaGNC" > 15368964 : c10::List< c10::optional< at::Tensor> > coordinates;< / span > < / span >
< span id = "L110" > < span class = "lineNum" > 110< / span > < span class = "tlaGNC" > 46106892 : coordinates.push_back(dataset.index({ name_index, n_sample }));< / span > < / span >
< span id = "L111" > < span class = "lineNum" > 111< / span > < span class = "tlaGNC" > 43942224 : for (auto parent : parents) {< / span > < / span >
< span id = "L112" > < span class = "lineNum" > 112< / span > < span class = "tlaGNC" > 28573260 : pos = find(features.begin(), features.end(), parent-> getName());< / span > < / span >
< span id = "L113" > < span class = "lineNum" > 113< / span > < span class = "tlaGNC" > 28573260 : if (pos == features.end()) {< / span > < / span >
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< span id = "L114" > < span class = "lineNum" > 114< / span > < span class = "tlaUNC tlaBgUNC" > 0 : throw std::logic_error(" Feature parent " + parent-> getName() + " not found in dataset" );< / span > < / span >
< span id = "L115" > < span class = "lineNum" > 115< / span > : }< / span >
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< span id = "L116" > < span class = "lineNum" > 116< / span > < span class = "tlaGNC tlaBgGNC" > 28573260 : int parent_index = pos - features.begin();< / span > < / span >
< span id = "L117" > < span class = "lineNum" > 117< / span > < span class = "tlaGNC" > 85719780 : coordinates.push_back(dataset.index({ parent_index, n_sample }));< / span > < / span >
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< span id = "L118" > < span class = "lineNum" > 118< / span > : }< / span >
< span id = "L119" > < span class = "lineNum" > 119< / span > : // Increment the count of the corresponding coordinate< / span >
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< span id = "L120" > < span class = "lineNum" > 120< / span > < span class = "tlaGNC" > 30737928 : cpTable.index_put_({ coordinates }, cpTable.index({ coordinates }) + weights.index({ n_sample }).item< double> ());< / span > < / span >
< span id = "L121" > < span class = "lineNum" > 121< / span > < span class = "tlaGNC" > 15368964 : }< / span > < / span >
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< span id = "L122" > < span class = "lineNum" > 122< / span > : // Normalize the counts< / span >
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< span id = "L123" > < span class = "lineNum" > 123< / span > < span class = "tlaGNC" > 42582 : cpTable = cpTable / cpTable.sum(0);< / span > < / span >
< span id = "L124" > < span class = "lineNum" > 124< / span > < span class = "tlaGNC" > 59353770 : }< / span > < / span >
< span id = "L125" > < span class = "lineNum" > 125< / span > < span class = "tlaGNC" > 95407308 : float Node::getFactorValue(std::map< std::string, int> & evidence)< / span > < / span >
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< span id = "L126" > < span class = "lineNum" > 126< / span > : {< / span >
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< span id = "L127" > < span class = "lineNum" > 127< / span > < span class = "tlaGNC" > 95407308 : c10::List< c10::optional< at::Tensor> > coordinates;< / span > < / span >
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< span id = "L128" > < span class = "lineNum" > 128< / span > : // following predetermined order of indices in the cpTable (see Node.h)< / span >
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< span id = "L129" > < span class = "lineNum" > 129< / span > < span class = "tlaGNC" > 95407308 : coordinates.push_back(at::tensor(evidence[name]));< / span > < / span >
< span id = "L130" > < span class = "lineNum" > 130< / span > < span class = "tlaGNC" > 271886904 : transform(parents.begin(), parents.end(), std::back_inserter(coordinates), [& evidence](const auto& parent) { return at::tensor(evidence[parent-> getName()]); });< / span > < / span >
< span id = "L131" > < span class = "lineNum" > 131< / span > < span class = "tlaGNC" > 190814616 : return cpTable.index({ coordinates }).item< float> ();< / span > < / span >
< span id = "L132" > < span class = "lineNum" > 132< / span > < span class = "tlaGNC" > 95407308 : }< / span > < / span >
< span id = "L133" > < span class = "lineNum" > 133< / span > < span class = "tlaGNC" > 918 : std::vector< std::string> Node::graph(const std::string& className)< / span > < / span >
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< span id = "L134" > < span class = "lineNum" > 134< / span > : {< / span >
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< span id = "L135" > < span class = "lineNum" > 135< / span > < span class = "tlaGNC" > 918 : auto output = std::vector< std::string> ();< / span > < / span >
< span id = "L136" > < span class = "lineNum" > 136< / span > < span class = "tlaGNC" > 918 : auto suffix = name == className ? " , fontcolor=red, fillcolor=lightblue, style=filled " : " " ;< / span > < / span >
< span id = "L137" > < span class = "lineNum" > 137< / span > < span class = "tlaGNC" > 918 : output.push_back(name + " [shape=circle" + suffix + " ] \n" );< / span > < / span >
< span id = "L138" > < span class = "lineNum" > 138< / span > < span class = "tlaGNC" > 2364 : transform(children.begin(), children.end(), back_inserter(output), [this](const auto& child) { return name + " -> " + child-> getName(); });< / span > < / span >
< span id = "L139" > < span class = "lineNum" > 139< / span > < span class = "tlaGNC" > 918 : return output;< / span > < / span >
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< span id = "L140" > < span class = "lineNum" > 140< / span > < span class = "tlaUNC tlaBgUNC" > 0 : }< / span > < / span >
< span id = "L141" > < span class = "lineNum" > 141< / span > : }< / span >
< / pre >
< / td >
< / tr >
< / table >
< br >
< table width = "100%" border = 0 cellspacing = 0 cellpadding = 0 >
< tr > < td class = "ruler" > < img src = "../../glass.png" width = 3 height = 3 alt = "" > < / td > < / tr >
< tr > < td class = "versionInfo" > Generated by: < a href = "https://github.com//linux-test-project/lcov" target = "_parent" > LCOV version 2.0-1< / a > < / td > < / tr >
< / table >
< br >
< / body >
< / html >
