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https://github.com/rmontanana/mdlp.git
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5 Commits
v1.2.1
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b3fc598c29
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b3fc598c29
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cc1efa0b4e
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90965877eb
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c4e6c041fe
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7938df7f0f
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2
.github/workflows/build.yml
vendored
2
.github/workflows/build.yml
vendored
@@ -28,7 +28,7 @@ jobs:
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unzip libtorch-cxx11-abi-shared-with-deps-2.3.1+cpu.zip
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unzip libtorch-cxx11-abi-shared-with-deps-2.3.1+cpu.zip
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- name: Tests & build-wrapper
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- name: Tests & build-wrapper
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run: |
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run: |
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cmake -S . -B build -Wno-dev -DCMAKE_PREFIX_PATH=$(pwd)/libtorch
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cmake -S . -B build -Wno-dev -DCMAKE_PREFIX_PATH=$(pwd)/libtorch -DENABLE_TESTING=ON
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build-wrapper-linux-x86-64 --out-dir ${{ env.BUILD_WRAPPER_OUT_DIR }} cmake --build build/ --config Release
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build-wrapper-linux-x86-64 --out-dir ${{ env.BUILD_WRAPPER_OUT_DIR }} cmake --build build/ --config Release
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cd build
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cd build
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make
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make
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2
.gitignore
vendored
2
.gitignore
vendored
@@ -33,6 +33,8 @@
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**/build
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**/build
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build_Debug
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build_Debug
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build_Release
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build_Release
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build_debug
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build_release
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**/lcoverage
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**/lcoverage
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.idea
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.idea
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cmake-*
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cmake-*
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@@ -6,4 +6,6 @@ include_directories(${TORCH_INCLUDE_DIRS})
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add_library(mdlp CPPFImdlp.cpp Metrics.cpp BinDisc.cpp Discretizer.cpp)
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add_library(mdlp CPPFImdlp.cpp Metrics.cpp BinDisc.cpp Discretizer.cpp)
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target_link_libraries(mdlp "${TORCH_LIBRARIES}")
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target_link_libraries(mdlp "${TORCH_LIBRARIES}")
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add_subdirectory(sample)
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add_subdirectory(sample)
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add_subdirectory(tests)
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if (ENABLE_TESTING)
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add_subdirectory(tests)
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endif(ENABLE_TESTING)
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@@ -20,7 +20,7 @@ namespace mdlp {
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{
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{
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auto num_elements = X_.numel();
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auto num_elements = X_.numel();
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samples_t X(X_.data_ptr<precision_t>(), X_.data_ptr<precision_t>() + num_elements);
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samples_t X(X_.data_ptr<precision_t>(), X_.data_ptr<precision_t>() + num_elements);
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labels_t y(y_.data_ptr<int64_t>(), y_.data_ptr<int64_t>() + num_elements);
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labels_t y(y_.data_ptr<int>(), y_.data_ptr<int>() + num_elements);
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fit(X, y);
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fit(X, y);
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}
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}
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torch::Tensor Discretizer::transform_t(torch::Tensor& X_)
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torch::Tensor Discretizer::transform_t(torch::Tensor& X_)
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@@ -28,14 +28,14 @@ namespace mdlp {
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auto num_elements = X_.numel();
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auto num_elements = X_.numel();
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samples_t X(X_.data_ptr<float>(), X_.data_ptr<float>() + num_elements);
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samples_t X(X_.data_ptr<float>(), X_.data_ptr<float>() + num_elements);
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auto result = transform(X);
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auto result = transform(X);
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return torch::tensor(result, torch::kInt64);
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return torch::tensor(result, torch::kInt32);
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}
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}
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torch::Tensor Discretizer::fit_transform_t(torch::Tensor& X_, torch::Tensor& y_)
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torch::Tensor Discretizer::fit_transform_t(torch::Tensor& X_, torch::Tensor& y_)
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{
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{
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auto num_elements = X_.numel();
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auto num_elements = X_.numel();
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samples_t X(X_.data_ptr<precision_t>(), X_.data_ptr<precision_t>() + num_elements);
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samples_t X(X_.data_ptr<precision_t>(), X_.data_ptr<precision_t>() + num_elements);
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labels_t y(y_.data_ptr<int64_t>(), y_.data_ptr<int64_t>() + num_elements);
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labels_t y(y_.data_ptr<int>(), y_.data_ptr<int>() + num_elements);
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auto result = fit_transform(X, y);
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auto result = fit_transform(X, y);
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return torch::tensor(result, torch::kInt64);
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return torch::tensor(result, torch::kInt32);
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}
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}
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}
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}
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13
Makefile
Normal file
13
Makefile
Normal file
@@ -0,0 +1,13 @@
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SHELL := /bin/bash
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.DEFAULT_GOAL := build
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.PHONY: build test
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build:
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@if [ -d build_release ]; then rm -fr build_release; fi
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@mkdir build_release
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@cmake -B build_release -S . -DCMAKE_BUILD_TYPE=Release -DENABLE_TESTING=OFF
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@cmake --build build_release
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test:
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@echo "Testing..."
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@cd tests && ./test
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@@ -34,6 +34,5 @@ build/sample/sample -h
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To run the tests and see coverage (llvm & gcovr have to be installed), execute the following commands:
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To run the tests and see coverage (llvm & gcovr have to be installed), execute the following commands:
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```bash
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```bash
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cd tests
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make test
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./test
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```
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```
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@@ -139,12 +139,12 @@ void process_file(const string& path, const string& file_name, bool class_last,
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std::cout << std::fixed << std::setprecision(1) << X[0][i] << " " << data[i] << std::endl;
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std::cout << std::fixed << std::setprecision(1) << X[0][i] << " " << data[i] << std::endl;
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}
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}
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auto Xt = torch::tensor(X[0], torch::kFloat32);
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auto Xt = torch::tensor(X[0], torch::kFloat32);
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auto yt = torch::tensor(y, torch::kInt64);
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auto yt = torch::tensor(y, torch::kInt32);
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//test.fit_t(Xt, yt);
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//test.fit_t(Xt, yt);
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auto result = test.fit_transform_t(Xt, yt);
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auto result = test.fit_transform_t(Xt, yt);
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std::cout << "Transformed data (torch)...: " << std::endl;
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std::cout << "Transformed data (torch)...: " << std::endl;
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for (int i = 130; i < 135; i++) {
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for (int i = 130; i < 135; i++) {
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std::cout << std::fixed << std::setprecision(1) << Xt[i].item<float>() << " " << result[i].item<int64_t>() << std::endl;
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std::cout << std::fixed << std::setprecision(1) << Xt[i].item<float>() << " " << result[i].item<int>() << std::endl;
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}
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}
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auto disc = mdlp::BinDisc(3);
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auto disc = mdlp::BinDisc(3);
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auto res_v = disc.fit_transform(X[0], y);
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auto res_v = disc.fit_transform(X[0], y);
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@@ -152,7 +152,7 @@ void process_file(const string& path, const string& file_name, bool class_last,
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auto res_t = disc.transform_t(Xt);
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auto res_t = disc.transform_t(Xt);
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std::cout << "Transformed data (BinDisc)...: " << std::endl;
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std::cout << "Transformed data (BinDisc)...: " << std::endl;
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for (int i = 130; i < 135; i++) {
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for (int i = 130; i < 135; i++) {
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std::cout << std::fixed << std::setprecision(1) << Xt[i].item<float>() << " " << res_v[i] << " " << res_t[i].item<int64_t>() << std::endl;
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std::cout << std::fixed << std::setprecision(1) << Xt[i].item<float>() << " " << res_v[i] << " " << res_t[i].item<int>() << std::endl;
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}
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}
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}
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}
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@@ -3,7 +3,7 @@ sonar.organization=rmontanana
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# This is the name and version displayed in the SonarCloud UI.
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# This is the name and version displayed in the SonarCloud UI.
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sonar.projectName=mdlp
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sonar.projectName=mdlp
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sonar.projectVersion=1.1.3
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sonar.projectVersion=1.2.1
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# sonar.test.exclusions=tests/**
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# sonar.test.exclusions=tests/**
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# sonar.tests=tests/
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# sonar.tests=tests/
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# sonar.coverage.exclusions=tests/**,sample/**
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# sonar.coverage.exclusions=tests/**,sample/**
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@@ -335,10 +335,10 @@ namespace mdlp {
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auto Xtt = fit_transform(X[0], file.getY());
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auto Xtt = fit_transform(X[0], file.getY());
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EXPECT_EQ(expected, Xtt);
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EXPECT_EQ(expected, Xtt);
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auto Xt_t = torch::tensor(X[0], torch::kFloat32);
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auto Xt_t = torch::tensor(X[0], torch::kFloat32);
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auto y_t = torch::tensor(file.getY(), torch::kInt64);
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auto y_t = torch::tensor(file.getY(), torch::kInt32);
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auto Xtt_t = fit_transform_t(Xt_t, y_t);
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auto Xtt_t = fit_transform_t(Xt_t, y_t);
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for (int i = 0; i < expected.size(); i++)
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for (int i = 0; i < expected.size(); i++)
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EXPECT_EQ(expected[i], Xtt_t[i].item<int64_t>());
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EXPECT_EQ(expected[i], Xtt_t[i].item<int>());
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}
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}
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TEST_F(TestBinDisc4Q, irisQuantile)
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TEST_F(TestBinDisc4Q, irisQuantile)
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{
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{
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@@ -352,13 +352,13 @@ namespace mdlp {
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auto Xtt = fit_transform(X[0], file.getY());
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auto Xtt = fit_transform(X[0], file.getY());
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EXPECT_EQ(expected, Xtt);
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EXPECT_EQ(expected, Xtt);
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auto Xt_t = torch::tensor(X[0], torch::kFloat32);
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auto Xt_t = torch::tensor(X[0], torch::kFloat32);
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auto y_t = torch::tensor(file.getY(), torch::kInt64);
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auto y_t = torch::tensor(file.getY(), torch::kInt32);
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auto Xtt_t = fit_transform_t(Xt_t, y_t);
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auto Xtt_t = fit_transform_t(Xt_t, y_t);
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for (int i = 0; i < expected.size(); i++)
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for (int i = 0; i < expected.size(); i++)
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EXPECT_EQ(expected[i], Xtt_t[i].item<int64_t>());
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EXPECT_EQ(expected[i], Xtt_t[i].item<int>());
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fit_t(Xt_t, y_t);
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fit_t(Xt_t, y_t);
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auto Xt_t2 = transform_t(Xt_t);
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auto Xt_t2 = transform_t(Xt_t);
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for (int i = 0; i < expected.size(); i++)
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for (int i = 0; i < expected.size(); i++)
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EXPECT_EQ(expected[i], Xt_t2[i].item<int64_t>());
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EXPECT_EQ(expected[i], Xt_t2[i].item<int>());
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}
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}
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}
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}
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Reference in New Issue
Block a user