Merge pull request 'conan' (#38) from conan into main

Reviewed-on: #38

.gitignore

@@ -46,3 +46,4 @@ docs/man
 docs/Doxyfile
 .cache
 vcpkg_installed
+CMakeUserPresets.json

CHANGELOG.md

@@ -17,6 +17,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
   - *ld_proposed_cuts*: number of cut points to return.
   - *mdlp_min_length*: minimum length of a partition in MDLP algorithm to be evaluated for partition.
   - *mdlp_max_depth*: maximum level of recursion in MDLP algorithm.
+- Remove vcpkg as a dependency manager, now the library is built with Conan package manager and CMake.
 
 ## [1.1.1] - 2025-05-20
 

CLAUDE.md

@@ -9,11 +9,22 @@ BayesNet is a C++ library implementing Bayesian Network Classifiers. It provides
 ## Build System & Dependencies
 
 ### Dependency Management
-- Uses **vcpkg** for package management with private registry at https://github.com/rmontanana/vcpkg-stash
+The project supports **two package managers**:
+
+#### vcpkg (Default)
+- Uses vcpkg with private registry at https://github.com/rmontanana/vcpkg-stash
 - Core dependencies: libtorch, nlohmann-json, folding, fimdlp, arff-files, catch2
 - All dependencies defined in `vcpkg.json` with version overrides
 
+#### Conan (Alternative)
+- Modern C++ package manager with better dependency resolution
+- Configured via `conanfile.py` for packaging and distribution
+- Supports subset of dependencies (libtorch, nlohmann-json, catch2)
+- Custom dependencies (folding, fimdlp, arff-files) need custom Conan recipes
+
 ### Build Commands
+
+#### Using vcpkg (Default)
 ```bash
 # Initialize dependencies
 make init
@@ -37,11 +48,38 @@ make viewcoverage
 make clean
 ```
 
+#### Using Conan
+```bash
+# Install Conan first: pip install conan
+
+# Initialize dependencies
+make conan-init
+
+# Build debug version (with tests and coverage)
+make conan-debug
+make buildd
+
+# Build release version
+make conan-release
+make buildr
+
+# Create and test Conan package
+make conan-create
+
+# Upload to Conan remote
+make conan-upload remote=myremote
+
+# Clean Conan cache and builds
+make conan-clean
+```
+
 ### CMake Configuration
 - Uses CMake 3.27+ with C++17 standard
 - Debug builds automatically enable testing and coverage
 - Release builds optimize with `-Ofast`
-- Supports both static library and vcpkg package installation
+- **Automatic package manager detection**: CMake detects whether Conan or vcpkg is being used
+- Supports both static library and package manager installation
+- Conditional dependency linking based on availability
 
 ## Testing Framework
 
@@ -94,9 +132,45 @@ Sample code in `sample/` directory demonstrates library usage:
 make sample fname=tests/data/iris.arff model=TANLd
 ```
 
+## Package Distribution
+
+### Creating Conan Packages
+```bash
+# Create package locally
+make conan-create
+
+# Test package installation
+cd test_package
+conan create ..
+
+# Upload to remote repository
+make conan-upload remote=myremote profile=myprofile
+```
+
+### Using the Library
+With Conan:
+```python
+# conanfile.txt or conanfile.py
+[requires]
+bayesnet/1.1.2@user/channel
+
+[generators]
+cmake
+```
+
+With vcpkg:
+```json
+{
+  "dependencies": ["bayesnet"]
+}
+```
+
 ## Common Development Tasks
 
 - **Add new classifier**: Extend BaseClassifier, implement in appropriate subdirectory
 - **Add new test**: Update `tests/CMakeLists.txt` and create test in `tests/`
 - **Modify build**: Edit main `CMakeLists.txt` or use Makefile targets
-- **Update dependencies**: Modify `vcpkg.json` and run `make init`
+- **Update dependencies**: 
+  - vcpkg: Modify `vcpkg.json` and run `make init`
+  - Conan: Modify `conanfile.py` and run `make conan-init`
+- **Package for distribution**: Use `make conan-create` for Conan packaging

CMakeLists.txt

@@ -1,7 +1,7 @@
 cmake_minimum_required(VERSION 3.27)
 
 project(bayesnet
-  VERSION 1.1.2
+  VERSION 1.2.0
   DESCRIPTION "Bayesian Network and basic classifiers Library."
   HOMEPAGE_URL "https://github.com/rmontanana/bayesnet"
   LANGUAGES CXX
@@ -10,11 +10,6 @@ project(bayesnet
 set(CMAKE_CXX_STANDARD 17)
 cmake_policy(SET CMP0135 NEW)
 
-find_package(Torch CONFIG REQUIRED)
-find_package(fimdlp CONFIG REQUIRED)
-find_package(nlohmann_json CONFIG REQUIRED)
-find_package(folding CONFIG REQUIRED)
-
 # Global CMake variables
 # ----------------------
 set(CMAKE_CXX_STANDARD 17)
@@ -31,17 +26,25 @@ endif()
 
 # Options
 # -------
-option(ENABLE_CLANG_TIDY "Enable to add clang tidy"              OFF)
 option(ENABLE_TESTING "Unit testing build"                       OFF)
 option(CODE_COVERAGE "Collect coverage from test library"        OFF)
-option(INSTALL_GTEST "Enable installation of googletest"         OFF)
+
+    
+find_package(Torch CONFIG REQUIRED)
+if(NOT TARGET torch::torch)
+    add_library(torch::torch INTERFACE IMPORTED GLOBAL)
+    # expose include paths and libraries that the find-module discovered
+    set_target_properties(torch::torch PROPERTIES
+        INTERFACE_INCLUDE_DIRECTORIES "${TORCH_INCLUDE_DIRS}"
+        INTERFACE_LINK_LIBRARIES      "${TORCH_LIBRARIES}")
+endif()
+
+find_package(fimdlp CONFIG REQUIRED)
+find_package(folding CONFIG REQUIRED)
+find_package(nlohmann_json REQUIRED)
 
 add_subdirectory(config)
 
-if (ENABLE_CLANG_TIDY)
-    include(StaticAnalyzers) # clang-tidy
-endif (ENABLE_CLANG_TIDY)
-
 # Add the library
 # ---------------
 include_directories(
@@ -52,7 +55,14 @@ include_directories(
 file(GLOB_RECURSE Sources "bayesnet/*.cc")
 
 add_library(bayesnet ${Sources})
-target_link_libraries(bayesnet fimdlp::fimdlp folding::folding "${TORCH_LIBRARIES}")
+
+target_link_libraries(bayesnet
+    nlohmann_json::nlohmann_json
+    folding::folding
+    fimdlp::fimdlp
+    torch::torch
+    arff-files::arff-files
+)
 
 # Testing
 # -------

CONAN_README.md

@@ -0,0 +1,87 @@
+# Using BayesNet with Conan
+
+This document explains how to use Conan as an alternative package manager for BayesNet.
+
+## Prerequisites
+
+```bash
+pip install conan
+conan remote add Cimmeria https://conan.rmontanana.es/artifactory/api/conan/Cimmeria
+conan profile new default --detect
+```
+
+## Quick Start
+
+### As a Consumer
+
+1. Create a `conanfile.txt` in your project:
+
+```ini
+[requires]
+libtorch/2.7.0
+bayesnet/1.2.0
+
+[generators]
+CMakeDeps
+CMakeToolchain
+
+```
+
+2. Install dependencies:
+
+```bash
+conan install . --build=missing
+```
+
+3. In your CMakeLists.txt:
+
+```cmake
+find_package(bayesnet REQUIRED)
+target_link_libraries(your_target bayesnet::bayesnet)
+```
+
+### Building BayesNet with Conan
+
+```bash
+# Install dependencies
+make conan-init
+
+# Build debug version
+make debug
+make buildd
+
+# Build release version
+make release
+make buildr
+
+# Create package
+make conan-create
+```
+
+## Current Limitations
+
+- Custom dependencies (folding, fimdlp, arff-files) are not available in ConanCenter
+- These need to be built as custom Conan packages or replaced with alternatives
+- The conanfile.py currently comments out these dependencies
+
+## Creating Custom Dependency Packages
+
+For the custom dependencies, you'll need to create Conan recipes:
+
+1. **folding**: Cross-validation library
+2. **fimdlp**: Discretization library
+3. **arff-files**: ARFF file format parser
+
+Contact the maintainer or create custom recipes for these packages.
+
+## Package Distribution
+
+Once custom dependencies are resolved:
+
+```bash
+# Create and test package
+make conan-create
+
+# Upload to your remote
+conan upload bayesnet/1.2.0 -r myremote
+```

Makefile

@@ -1,6 +1,6 @@
 SHELL := /bin/bash
 .DEFAULT_GOAL := help
-.PHONY: viewcoverage coverage setup help install uninstall diagrams buildr buildd test clean debug release sample updatebadge doc doc-install init clean-test
+.PHONY: viewcoverage coverage setup help install uninstall diagrams buildr buildd test clean updatebadge doc doc-install init clean-test conan-debug conan-release conan-create conan-upload conan-clean conan-sample
 
 f_release = build_Release
 f_debug = build_Debug
@@ -31,7 +31,6 @@ define ClearTests
 	fi ; 
 endef
 
-
 setup: ## Install dependencies for tests and coverage
 	@if [ "$(shell uname)" = "Darwin" ]; then \
 		brew install gcovr; \
@@ -43,30 +42,30 @@ setup: ## Install dependencies for tests and coverage
 	fi
 	@echo "* You should install plantuml & graphviz for the diagrams"
 
-diagrams: ## Create an UML class diagram & dependency of the project (diagrams/BayesNet.png)
+clean: ## Clean the project
-	@which $(plantuml) || (echo ">>> Please install plantuml"; exit 1)
+	@echo ">>> Cleaning the project..."
-	@which $(dot) || (echo ">>> Please install graphviz"; exit 1)
+	@if test -f CMakeCache.txt ; then echo "- Deleting CMakeCache.txt"; rm -f CMakeCache.txt; fimake 
-	@which $(clang-uml) || (echo ">>> Please install clang-uml"; exit 1)
+	@for folder in $(f_release) $(f_debug) vpcpkg_installed install_test ; do \
-	@export PLANTUML_LIMIT_SIZE=16384
+	if test -d "$$folder" ; then \
-	@echo ">>> Creating UML class diagram of the project...";
+		echo "- Deleting $$folder folder" ; \
-	@$(clang-uml) -p 
+		rm -rf "$$folder"; \
-	@cd $(f_diagrams); \
+	fi; \
-	$(plantuml) -tsvg BayesNet.puml
+	done
-	@echo ">>> Creating dependency graph diagram of the project...";
+	@$(MAKE) clean-test
-	$(MAKE) debug
+	@echo ">>> Done";
-	cd $(f_debug) && cmake .. --graphviz=dependency.dot 
+
-	@$(dot) -Tsvg $(f_debug)/dependency.dot.BayesNet -o $(f_diagrams)/dependency.svg
+# Build targets
+# =============
 
 buildd: ## Build the debug targets
-	cmake --build $(f_debug) -t $(app_targets) --parallel $(CMAKE_BUILD_PARALLEL_LEVEL)
+	cmake --build $(f_debug) --config Debug -t $(app_targets) --parallel $(CMAKE_BUILD_PARALLEL_LEVEL)
 
 buildr: ## Build the release targets
-	cmake --build $(f_release) -t $(app_targets) --parallel $(CMAKE_BUILD_PARALLEL_LEVEL)
+	cmake --build $(f_release) --config Release -t $(app_targets) --parallel $(CMAKE_BUILD_PARALLEL_LEVEL)
 
-clean-test: ## Clean the tests info
+
-	@echo ">>> Cleaning Debug BayesNet tests...";
+# Install targets
-	$(call ClearTests)
+# ===============
-	@echo ">>> Done";
 
 uninstall: ## Uninstall library
 	@echo ">>> Uninstalling BayesNet...";
@@ -79,53 +78,13 @@ install: ## Install library
 	@cmake --install $(f_release) --prefix $(prefix)
 	@echo ">>> Done";
 
-init: ## Initialize the project installing dependencies
-	@echo ">>> Installing dependencies"
-	@vcpkg install
-	@echo ">>> Done";
 
-clean: ## Clean the project
+# Test targets
-	@echo ">>> Cleaning the project..."
+# ============
-	@if test -f CMakeCache.txt ; then echo "- Deleting CMakeCache.txt"; rm -f CMakeCache.txt; fi
-	@for folder in $(f_release) $(f_debug) vpcpkg_installed install_test ; do \
-	if test -d "$$folder" ; then \
-		echo "- Deleting $$folder folder" ; \
-		rm -rf "$$folder"; \
-	fi; \
-	done
-	@$(MAKE) clean-test
-	@echo ">>> Done";
 
-debug: ## Build a debug version of the project
+clean-test: ## Clean the tests info
-	@echo ">>> Building Debug BayesNet...";
+	@echo ">>> Cleaning Debug BayesNet tests...";
-	@if [ -d ./$(f_debug) ]; then rm -rf ./$(f_debug); fi
+	$(call ClearTests)
-	@mkdir $(f_debug); 
-	@cmake -S . -B $(f_debug) -D CMAKE_BUILD_TYPE=Debug -D ENABLE_TESTING=ON -D CODE_COVERAGE=ON -DCMAKE_TOOLCHAIN_FILE=${VCPKG_ROOT}/scripts/buildsystems/vcpkg.cmake
-	@echo ">>> Done";
-
-release: ## Build a Release version of the project
-	@echo ">>> Building Release BayesNet...";
-	@if [ -d ./$(f_release) ]; then rm -rf ./$(f_release); fi
-	@mkdir $(f_release); 
-	@cmake -S . -B $(f_release) -D CMAKE_BUILD_TYPE=Release -DCMAKE_TOOLCHAIN_FILE=${VCPKG_ROOT}/scripts/buildsystems/vcpkg.cmake
-	@echo ">>> Done";
-
-fname = "tests/data/iris.arff"
-model = "TANLd"
-sample: ## Build sample
-	@echo ">>> Building Sample...";
-	@if [ -d ./sample/build ]; then rm -rf ./sample/build; fi
-	@cd sample && cmake -B build -S . -D CMAKE_BUILD_TYPE=Release -DCMAKE_TOOLCHAIN_FILE=${VCPKG_ROOT}/scripts/buildsystems/vcpkg.cmake && \
-	cmake --build build -t bayesnet_sample
-	sample/build/bayesnet_sample $(fname) $(model)
-	@echo ">>> Done";
-
-fname = "tests/data/iris.arff"
-sample2: ## Build sample2
-	@echo ">>> Building Sample...";
-	@if [ -d ./sample/build ]; then rm -rf ./sample/build; fi
-	@cd sample && cmake -B build -S . -D CMAKE_BUILD_TYPE=Debug && cmake --build build -t bayesnet_sample_xspode
-	sample/build/bayesnet_sample_xspode $(fname)
 	@echo ">>> Done";
 
 opt = ""
@@ -157,6 +116,7 @@ coverage: ## Run tests and generate coverage report (build/index.html)
 	$(lcov) --remove coverage.info 'tests/*' --output-file coverage.info >/dev/null 2>&1; \
 	$(lcov) --remove coverage.info 'bayesnet/utils/loguru.*' --ignore-errors unused --output-file coverage.info >/dev/null 2>&1; \
 	$(lcov) --remove coverage.info '/opt/miniconda/*' --ignore-errors unused --output-file coverage.info >/dev/null 2>&1; \
+	$(lcov) --remove coverage.info '*/.conan2/*' --ignore-errors unused --output-file coverage.info >/dev/null 2>&1; \
 	$(lcov) --summary coverage.info
 	@$(MAKE) updatebadge
 	@echo ">>> Done";	
@@ -182,6 +142,9 @@ updatebadge: ## Update the coverage badge in README.md
 	@env python update_coverage.py $(f_debug)/tests
 	@echo ">>> Done";
 
+# Documentation targets
+# =====================
+
 doc: ## Generate documentation
 	@echo ">>> Generating documentation..."
 	@cmake --build $(f_release) -t doxygen
@@ -196,6 +159,20 @@ doc: ## Generate documentation
 	fi
 	@echo ">>> Done";
 
+diagrams: ## Create an UML class diagram & dependency of the project (diagrams/BayesNet.png)
+	@which $(plantuml) || (echo ">>> Please install plantuml"; exit 1)
+	@which $(dot) || (echo ">>> Please install graphviz"; exit 1)
+	@which $(clang-uml) || (echo ">>> Please install clang-uml"; exit 1)
+	@export PLANTUML_LIMIT_SIZE=16384
+	@echo ">>> Creating UML class diagram of the project...";
+	@$(clang-uml) -p 
+	@cd $(f_diagrams); \
+	$(plantuml) -tsvg BayesNet.puml
+	@echo ">>> Creating dependency graph diagram of the project...";
+	$(MAKE) debug
+	cd $(f_debug) && cmake .. --graphviz=dependency.dot 
+	@$(dot) -Tsvg $(f_debug)/dependency.dot.BayesNet -o $(f_diagrams)/dependency.svg
+
 docdir = ""
 doc-install: ## Install documentation
 	@echo ">>> Installing documentation..."
@@ -210,6 +187,71 @@ doc-install: ## Install documentation
 	@sudo cp -rp $(mansrcdir) $(mandestdir)
 	@echo ">>> Done";
 
+# Conan package manager targets
+# =============================
+
+debug:             ## Build debug version using Conan
+	@echo ">>> Building *Debug* BayesNet with Conan..."
+	@rm -rf $(f_debug)            # wipe previous tree
+	@conan install . \
+	            -s build_type=Debug \
+	            --build=missing \
+	            -of $(f_debug) \
+				--profile=debug
+	@cmake -S . -B $(f_debug) \
+	       -DCMAKE_BUILD_TYPE=Debug \
+	       -DENABLE_TESTING=ON \
+	       -DCODE_COVERAGE=ON \
+	       -DCMAKE_TOOLCHAIN_FILE=$(f_debug)/build/Debug/generators/conan_toolchain.cmake
+	@echo ">>> Done"
+
+release: ## Build release version using Conan
+	@echo ">>> Building Release BayesNet with Conan..."
+	@conan install . \
+	            -s build_type=Release \
+	            --build=missing \
+	            -of $(f_debug) \
+				--profile=release
+	@if [ -d ./$(f_release) ]; then rm -rf ./$(f_release); fi
+	@mkdir $(f_release)
+	@conan install . -s build_type=Release --build=missing -of $(f_release)
+	@cmake -S . -B $(f_release) -D CMAKE_BUILD_TYPE=Release -DCMAKE_TOOLCHAIN_FILE=$(f_release)/build/Release/generators/conan_toolchain.cmake
+	@echo ">>> Done"
+
+conan-create: ## Create Conan package
+	@echo ">>> Creating Conan package..."
+	@conan create . --build=missing -tf "" --profile=release -tf ""
+	@conan create . --build=missing -tf "" --profile=debug
+	@echo ">>> Done"
+
+profile ?= release
+remote ?= Cimmeria
+conan-upload: ## Upload package to Conan remote (profile=release remote=Cimmeria)
+	@echo ">>> Uploading to Conan remote $(remote) with profile $(profile)..."
+	@conan upload bayesnet/$(grep version conanfile.py | cut -d'"' -f2) -r $(remote) --confirm
+	@echo ">>> Done"
+
+conan-clean: ## Clean Conan cache and build folders
+	@echo ">>> Cleaning Conan cache and build folders..."
+	@conan remove "*" --confirm
+	@if test -d "$(f_release)" ; then rm -rf "$(f_release)"; fi
+	@if test -d "$(f_debug)" ; then rm -rf "$(f_debug)"; fi
+	@echo ">>> Done"
+
+fname = "tests/data/iris.arff"
+model = "TANLd"
+sample: ## Build sample with Conan
+	@echo ">>> Building Sample with Conan...";
+	@if [ -d ./sample/build ]; then rm -rf ./sample/build; fi
+	@cd sample && conan install . --output-folder=build --build=missing
+	@cd sample && cmake -B build -S . -DCMAKE_BUILD_TYPE=Release -DCMAKE_TOOLCHAIN_FILE=build/conan_toolchain.cmake && \
+	cmake --build build -t bayesnet_sample
+	sample/build/bayesnet_sample $(fname) $(model)
+	@echo ">>> Done";
+
+# Help target
+# ===========
+
 help: ## Show help message
 	@IFS=$$'\n' ; \
 	help_lines=(`fgrep -h "##" $(MAKEFILE_LIST) | fgrep -v fgrep | sed -e 's/\\$$//' | sed -e 's/##/:/'`); \

README.md

@@ -8,119 +8,119 @@
 [![Reliability Rating](https://sonarcloud.io/api/project_badges/measure?project=rmontanana_BayesNet&metric=reliability_rating)](https://sonarcloud.io/summary/new_code?id=rmontanana_BayesNet)
 [![Ask DeepWiki](https://deepwiki.com/badge.svg)](https://deepwiki.com/Doctorado-ML/BayesNet)
 ![Gitea Last Commit](https://img.shields.io/gitea/last-commit/rmontanana/bayesnet?gitea_url=https://gitea.rmontanana.es&logo=gitea)
-[![Coverage Badge](https://img.shields.io/badge/Coverage-99,2%25-green)](https://gitea.rmontanana.es/rmontanana/BayesNet)
+[![Coverage Badge](https://img.shields.io/badge/Coverage-98,0%25-green)](https://gitea.rmontanana.es/rmontanana/BayesNet)
 [![DOI](https://zenodo.org/badge/667782806.svg)](https://doi.org/10.5281/zenodo.14210344)
 
 Bayesian Network Classifiers library
 
-## Setup
+## Using the Library
 
-### Using the vcpkg library
+### Using Conan Package Manager
 
-You can use the library with the vcpkg library manager. In your project you have to add the following files:
+You can use the library with the [Conan](https://conan.io/) package manager. In your project you need to add the following files:
 
-#### vcpkg.json
+#### conanfile.txt
 
-```json
+```txt
-{
+[requires]
-  "name": "sample-project",
+bayesnet/1.1.2
-  "version-string": "0.1.0",
-  "dependencies": [
-    "bayesnet"
-  ]
-}
-```
 
-#### vcpkg-configuration.json
+[generators]
-
+CMakeDeps
-```json
+CMakeToolchain
-{
-  "registries": [
-    {
-      "kind": "git",
-      "repository": "https://github.com/rmontanana/vcpkg-stash",
-      "baseline": "393efa4e74e053b6f02c4ab03738c8fe796b28e5",
-      "packages": [
-        "folding",
-        "bayesnet",
-        "arff-files",
-        "fimdlp",
-        "libtorch-bin"
-      ]
-    }
-  ],
-  "default-registry": {
-    "kind": "git",
-    "repository": "https://github.com/microsoft/vcpkg",
-    "baseline": "760bfd0c8d7c89ec640aec4df89418b7c2745605"
-  }
-}
 ```
 
 #### CMakeLists.txt
 
-You have to include the following lines in your `CMakeLists.txt` file:
+Include the following lines in your `CMakeLists.txt` file:
 
 ```cmake
-find_package(bayesnet CONFIG REQUIRED)
+find_package(bayesnet REQUIRED)
 
 add_executable(myapp main.cpp)
 
 target_link_libraries(myapp PRIVATE bayesnet::bayesnet)
 ```
 
-After that, you can use the `vcpkg` command to install the dependencies:
+Then install the dependencies and build your project:
 
 ```bash
-vcpkg install
+conan install . --output-folder=build --build=missing
+cmake -B build -S . -DCMAKE_BUILD_TYPE=Release -DCMAKE_TOOLCHAIN_FILE=build/conan_toolchain.cmake
+cmake --build build
 ```
 
 **Note: In the `sample` folder you can find a sample application that uses the library. You can use it as a reference to create your own application.**
 
-## Playing with the library
+## Building and Testing
 
-The dependencies are managed with [vcpkg](https://vcpkg.io/) and supported by a private vcpkg repository in [https://github.com/rmontanana/vcpkg-stash](https://github.com/rmontanana/vcpkg-stash).
+The project uses [Conan](https://conan.io/) for dependency management and provides convenient Makefile targets for common tasks.
+
+### Prerequisites
+
+- [Conan](https://conan.io/) package manager (`pip install conan`)
+- CMake 3.27+
+- C++17 compatible compiler
 
 ### Getting the code
 
 ```bash
 git clone https://github.com/doctorado-ml/bayesnet
+cd bayesnet
 ```
 
-Once you have the code, you can use the `make` command to build the project. The `Makefile` is used to manage the build process and it will automatically download and install the dependencies.
+### Build Commands
 
-### Release
+#### Release Build
 
 ```bash
-make init # Install dependencies
+make release        # Configure release build with Conan
-make release # Build the release version
+make buildr         # Build the release version
-make buildr # compile and link the release version
 ```
 
-### Debug & Tests
+#### Debug Build & Tests
 
 ```bash
-make init # Install dependencies
+make debug          # Configure debug build with Conan
-make debug # Build the debug version
+make buildd         # Build the debug version
 make test           # Run the tests
 ```
 
-### Coverage
+#### Coverage Analysis
 
 ```bash
-make coverage # Run the tests with coverage
+make coverage       # Run tests with coverage analysis
-make viewcoverage # View the coverage report in the browser
+make viewcoverage   # View coverage report in browser
 ```
 
-### Sample app
+#### Sample Application
 
-After building and installing the release version, you can run the sample app with the following commands:
+Run the sample application with different datasets and models:
 
 ```bash
-make sample
+make sample                                    # Run with default settings
-make sample fname=tests/data/glass.arff
+make sample fname=tests/data/glass.arff       # Use glass dataset
+make sample fname=tests/data/iris.arff model=AODE  # Use specific model
 ```
 
+### Available Makefile Targets
+
+- `debug` - Configure debug build using Conan
+- `release` - Configure release build using Conan  
+- `buildd` - Build debug targets
+- `buildr` - Build release targets
+- `test` - Run all tests (use `opt="-s"` for verbose output)
+- `coverage` - Generate test coverage report
+- `viewcoverage` - Open coverage report in browser
+- `sample` - Build and run sample application
+- `conan-create` - Create Conan package
+- `conan-upload` - Upload package to Conan remote
+- `conan-clean` - Clean Conan cache and build folders
+- `clean` - Clean all build artifacts
+- `doc` - Generate documentation
+- `diagrams` - Generate UML diagrams
+- `help` - Show all available targets
+
 ## Models
 
 #### - TAN

bayesnet/CMakeLists.txt

@@ -1,13 +0,0 @@
-include_directories(
-    ${BayesNet_SOURCE_DIR}/lib/log
-    ${BayesNet_SOURCE_DIR}/lib/mdlp/src
-    ${BayesNet_SOURCE_DIR}/lib/folding
-    ${BayesNet_SOURCE_DIR}/lib/json/include
-    ${BayesNet_SOURCE_DIR}
-    ${CMAKE_BINARY_DIR}/configured_files/include
-)
-
-file(GLOB_RECURSE Sources "*.cc")
-
-add_library(BayesNet ${Sources})
-target_link_libraries(BayesNet fimdlp "${TORCH_LIBRARIES}")

cmake/modules/AddGitSubmodule.cmake

@@ -1,12 +0,0 @@
-
-function(add_git_submodule dir)
-  find_package(Git REQUIRED) 
-
-  if(NOT EXISTS ${dir}/CMakeLists.txt)
-    message(STATUS "🚨 Adding git submodule => ${dir}")
-    execute_process(COMMAND ${GIT_EXECUTABLE}
-      submodule update --init --recursive -- ${dir}
-      WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}) 
-  endif()
-  add_subdirectory(${dir})
-endfunction(add_git_submodule)

cmake/modules/CodeCoverage.cmake

@@ -1,746 +0,0 @@
-# Copyright (c) 2012 - 2017, Lars Bilke
-# All rights reserved.
-#
-# Redistribution and use in source and binary forms, with or without modification,
-# are permitted provided that the following conditions are met:
-#
-# 1. Redistributions of source code must retain the above copyright notice, this
-#    list of conditions and the following disclaimer.
-#
-# 2. Redistributions in binary form must reproduce the above copyright notice,
-#    this list of conditions and the following disclaimer in the documentation
-#    and/or other materials provided with the distribution.
-#
-# 3. Neither the name of the copyright holder nor the names of its contributors
-#    may be used to endorse or promote products derived from this software without
-#    specific prior written permission.
-#
-# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
-# ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
-# WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-# DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR
-# ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
-# (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
-# LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
-# ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
-# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
-# SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-#
-# CHANGES:
-#
-# 2012-01-31, Lars Bilke
-# - Enable Code Coverage
-#
-# 2013-09-17, Joakim Söderberg
-# - Added support for Clang.
-# - Some additional usage instructions.
-#
-# 2016-02-03, Lars Bilke
-# - Refactored functions to use named parameters
-#
-# 2017-06-02, Lars Bilke
-# - Merged with modified version from github.com/ufz/ogs
-#
-# 2019-05-06, Anatolii Kurotych
-# - Remove unnecessary --coverage flag
-#
-# 2019-12-13, FeRD (Frank Dana)
-# - Deprecate COVERAGE_LCOVR_EXCLUDES and COVERAGE_GCOVR_EXCLUDES lists in favor
-#   of tool-agnostic COVERAGE_EXCLUDES variable, or EXCLUDE setup arguments.
-# - CMake 3.4+: All excludes can be specified relative to BASE_DIRECTORY
-# - All setup functions: accept BASE_DIRECTORY, EXCLUDE list
-# - Set lcov basedir with -b argument
-# - Add automatic --demangle-cpp in lcovr, if 'c++filt' is available (can be
-#   overridden with NO_DEMANGLE option in setup_target_for_coverage_lcovr().)
-# - Delete output dir, .info file on 'make clean'
-# - Remove Python detection, since version mismatches will break gcovr
-# - Minor cleanup (lowercase function names, update examples...)
-#
-# 2019-12-19, FeRD (Frank Dana)
-# - Rename Lcov outputs, make filtered file canonical, fix cleanup for targets
-#
-# 2020-01-19, Bob Apthorpe
-# - Added gfortran support
-#
-# 2020-02-17, FeRD (Frank Dana)
-# - Make all add_custom_target()s VERBATIM to auto-escape wildcard characters
-#   in EXCLUDEs, and remove manual escaping from gcovr targets
-#
-# 2021-01-19, Robin Mueller
-# - Add CODE_COVERAGE_VERBOSE option which will allow to print out commands which are run
-# - Added the option for users to set the GCOVR_ADDITIONAL_ARGS variable to supply additional
-#   flags to the gcovr command
-#
-# 2020-05-04, Mihchael Davis
-#     - Add -fprofile-abs-path to make gcno files contain absolute paths
-#     - Fix BASE_DIRECTORY not working when defined
-#     - Change BYPRODUCT from folder to index.html to stop ninja from complaining about double defines
-#
-# 2021-05-10, Martin Stump
-#     - Check if the generator is multi-config before warning about non-Debug builds
-#
-# 2022-02-22, Marko Wehle
-#     - Change gcovr output from -o <filename> for --xml <filename> and --html <filename> output respectively.
-#       This will allow for Multiple Output Formats at the same time by making use of GCOVR_ADDITIONAL_ARGS, e.g. GCOVR_ADDITIONAL_ARGS "--txt".
-#
-# 2022-09-28, Sebastian Mueller
-#     - fix append_coverage_compiler_flags_to_target to correctly add flags
-#     - replace "-fprofile-arcs -ftest-coverage" with "--coverage" (equivalent)
-#
-# USAGE:
-#
-# 1. Copy this file into your cmake modules path.
-#
-# 2. Add the following line to your CMakeLists.txt (best inside an if-condition
-#    using a CMake option() to enable it just optionally):
-#      include(CodeCoverage)
-#
-# 3. Append necessary compiler flags for all supported source files:
-#      append_coverage_compiler_flags()
-#    Or for specific target:
-#      append_coverage_compiler_flags_to_target(YOUR_TARGET_NAME)
-#
-# 3.a (OPTIONAL) Set appropriate optimization flags, e.g. -O0, -O1 or -Og
-#
-# 4. If you need to exclude additional directories from the report, specify them
-#    using full paths in the COVERAGE_EXCLUDES variable before calling
-#    setup_target_for_coverage_*().
-#    Example:
-#      set(COVERAGE_EXCLUDES
-#          '${PROJECT_SOURCE_DIR}/src/dir1/*'
-#          '/path/to/my/src/dir2/*')
-#    Or, use the EXCLUDE argument to setup_target_for_coverage_*().
-#    Example:
-#      setup_target_for_coverage_lcov(
-#          NAME coverage
-#          EXECUTABLE testrunner
-#          EXCLUDE "${PROJECT_SOURCE_DIR}/src/dir1/*" "/path/to/my/src/dir2/*")
-#
-# 4.a NOTE: With CMake 3.4+, COVERAGE_EXCLUDES or EXCLUDE can also be set
-#     relative to the BASE_DIRECTORY (default: PROJECT_SOURCE_DIR)
-#     Example:
-#       set(COVERAGE_EXCLUDES "dir1/*")
-#       setup_target_for_coverage_gcovr_html(
-#           NAME coverage
-#           EXECUTABLE testrunner
-#           BASE_DIRECTORY "${PROJECT_SOURCE_DIR}/src"
-#           EXCLUDE "dir2/*")
-#
-# 5. Use the functions described below to create a custom make target which
-#    runs your test executable and produces a code coverage report.
-#
-# 6. Build a Debug build:
-#      cmake -DCMAKE_BUILD_TYPE=Debug ..
-#      make
-#      make my_coverage_target
-#
-
-include(CMakeParseArguments)
-
-option(CODE_COVERAGE_VERBOSE "Verbose information" TRUE)
-
-# Check prereqs
-find_program( GCOV_PATH gcov )
-find_program( LCOV_PATH  NAMES lcov lcov.bat lcov.exe lcov.perl)
-find_program( FASTCOV_PATH NAMES fastcov fastcov.py )
-find_program( GENHTML_PATH NAMES genhtml genhtml.perl genhtml.bat )
-find_program( GCOVR_PATH gcovr PATHS ${CMAKE_SOURCE_DIR}/scripts/test)
-find_program( CPPFILT_PATH NAMES c++filt )
-
-if(NOT GCOV_PATH)
-    message(FATAL_ERROR "gcov not found! Aborting...")
-endif() # NOT GCOV_PATH
-
-# Check supported compiler (Clang, GNU and Flang)
-get_property(LANGUAGES GLOBAL PROPERTY ENABLED_LANGUAGES)
-foreach(LANG ${LANGUAGES})
-  if("${CMAKE_${LANG}_COMPILER_ID}" MATCHES "(Apple)?[Cc]lang")
-    if("${CMAKE_${LANG}_COMPILER_VERSION}" VERSION_LESS 3)
-      message(FATAL_ERROR "Clang version must be 3.0.0 or greater! Aborting...")
-    endif()
-  elseif(NOT "${CMAKE_${LANG}_COMPILER_ID}" MATCHES "GNU"
-         AND NOT "${CMAKE_${LANG}_COMPILER_ID}" MATCHES "(LLVM)?[Ff]lang")
-         if ("${LANG}" MATCHES "CUDA")
-             message(STATUS "Ignoring CUDA")
-        else()
-            message(FATAL_ERROR "Compiler is not GNU or Flang! Aborting...")
-        endif()
-  endif()
-endforeach()
-
-set(COVERAGE_COMPILER_FLAGS "-g --coverage"
-    CACHE INTERNAL "")
-if(CMAKE_CXX_COMPILER_ID MATCHES "(GNU|Clang)")
-    include(CheckCXXCompilerFlag)
-    check_cxx_compiler_flag(-fprofile-abs-path HAVE_fprofile_abs_path)
-    if(HAVE_fprofile_abs_path)
-        set(COVERAGE_COMPILER_FLAGS "${COVERAGE_COMPILER_FLAGS} -fprofile-abs-path")
-    endif()
-endif()
-
-set(CMAKE_Fortran_FLAGS_COVERAGE
-    ${COVERAGE_COMPILER_FLAGS}
-    CACHE STRING "Flags used by the Fortran compiler during coverage builds."
-    FORCE )
-set(CMAKE_CXX_FLAGS_COVERAGE
-    ${COVERAGE_COMPILER_FLAGS}
-    CACHE STRING "Flags used by the C++ compiler during coverage builds."
-    FORCE )
-set(CMAKE_C_FLAGS_COVERAGE
-    ${COVERAGE_COMPILER_FLAGS}
-    CACHE STRING "Flags used by the C compiler during coverage builds."
-    FORCE )
-set(CMAKE_EXE_LINKER_FLAGS_COVERAGE
-    ""
-    CACHE STRING "Flags used for linking binaries during coverage builds."
-    FORCE )
-set(CMAKE_SHARED_LINKER_FLAGS_COVERAGE
-    ""
-    CACHE STRING "Flags used by the shared libraries linker during coverage builds."
-    FORCE )
-mark_as_advanced(
-    CMAKE_Fortran_FLAGS_COVERAGE
-    CMAKE_CXX_FLAGS_COVERAGE
-    CMAKE_C_FLAGS_COVERAGE
-    CMAKE_EXE_LINKER_FLAGS_COVERAGE
-    CMAKE_SHARED_LINKER_FLAGS_COVERAGE )
-
-get_property(GENERATOR_IS_MULTI_CONFIG GLOBAL PROPERTY GENERATOR_IS_MULTI_CONFIG)
-if(NOT (CMAKE_BUILD_TYPE STREQUAL "Debug" OR GENERATOR_IS_MULTI_CONFIG))
-    message(WARNING "Code coverage results with an optimised (non-Debug) build may be misleading")
-endif() # NOT (CMAKE_BUILD_TYPE STREQUAL "Debug" OR GENERATOR_IS_MULTI_CONFIG)
-
-if(CMAKE_C_COMPILER_ID STREQUAL "GNU" OR CMAKE_Fortran_COMPILER_ID STREQUAL "GNU")
-    link_libraries(gcov)
-endif()
-
-# Defines a target for running and collection code coverage information
-# Builds dependencies, runs the given executable and outputs reports.
-# NOTE! The executable should always have a ZERO as exit code otherwise
-# the coverage generation will not complete.
-#
-# setup_target_for_coverage_lcov(
-#     NAME testrunner_coverage                    # New target name
-#     EXECUTABLE testrunner -j ${PROCESSOR_COUNT} # Executable in PROJECT_BINARY_DIR
-#     DEPENDENCIES testrunner                     # Dependencies to build first
-#     BASE_DIRECTORY "../"                        # Base directory for report
-#                                                 #  (defaults to PROJECT_SOURCE_DIR)
-#     EXCLUDE "src/dir1/*" "src/dir2/*"           # Patterns to exclude (can be relative
-#                                                 #  to BASE_DIRECTORY, with CMake 3.4+)
-#     NO_DEMANGLE                                 # Don't demangle C++ symbols
-#                                                 #  even if c++filt is found
-# )
-function(setup_target_for_coverage_lcov)
-
-    set(options NO_DEMANGLE SONARQUBE)
-    set(oneValueArgs BASE_DIRECTORY NAME)
-    set(multiValueArgs EXCLUDE EXECUTABLE EXECUTABLE_ARGS DEPENDENCIES LCOV_ARGS GENHTML_ARGS)
-    cmake_parse_arguments(Coverage "${options}" "${oneValueArgs}" "${multiValueArgs}" ${ARGN})
-
-    if(NOT LCOV_PATH)
-        message(FATAL_ERROR "lcov not found! Aborting...")
-    endif() # NOT LCOV_PATH
-
-    if(NOT GENHTML_PATH)
-        message(FATAL_ERROR "genhtml not found! Aborting...")
-    endif() # NOT GENHTML_PATH
-
-    # Set base directory (as absolute path), or default to PROJECT_SOURCE_DIR
-    if(DEFINED Coverage_BASE_DIRECTORY)
-        get_filename_component(BASEDIR ${Coverage_BASE_DIRECTORY} ABSOLUTE)
-    else()
-        set(BASEDIR ${PROJECT_SOURCE_DIR})
-    endif()
-
-    # Collect excludes (CMake 3.4+: Also compute absolute paths)
-    set(LCOV_EXCLUDES "")
-    foreach(EXCLUDE ${Coverage_EXCLUDE} ${COVERAGE_EXCLUDES} ${COVERAGE_LCOV_EXCLUDES})
-        if(CMAKE_VERSION VERSION_GREATER 3.4)
-            get_filename_component(EXCLUDE ${EXCLUDE} ABSOLUTE BASE_DIR ${BASEDIR})
-        endif()
-        list(APPEND LCOV_EXCLUDES "${EXCLUDE}")
-    endforeach()
-    list(REMOVE_DUPLICATES LCOV_EXCLUDES)
-
-    # Conditional arguments
-    if(CPPFILT_PATH AND NOT ${Coverage_NO_DEMANGLE})
-      set(GENHTML_EXTRA_ARGS "--demangle-cpp")
-    endif()
-
-    # Setting up commands which will be run to generate coverage data.
-    # Cleanup lcov
-    set(LCOV_CLEAN_CMD
-        ${LCOV_PATH} ${Coverage_LCOV_ARGS} --gcov-tool ${GCOV_PATH} -directory .
-        -b ${BASEDIR} --zerocounters
-    )
-    # Create baseline to make sure untouched files show up in the report
-    set(LCOV_BASELINE_CMD
-        ${LCOV_PATH} ${Coverage_LCOV_ARGS} --gcov-tool ${GCOV_PATH} -c -i -d . -b
-        ${BASEDIR} -o ${Coverage_NAME}.base
-    )
-    # Run tests
-    set(LCOV_EXEC_TESTS_CMD
-        ${Coverage_EXECUTABLE} ${Coverage_EXECUTABLE_ARGS}
-    )
-    # Capturing lcov counters and generating report
-    set(LCOV_CAPTURE_CMD
-        ${LCOV_PATH} ${Coverage_LCOV_ARGS} --gcov-tool ${GCOV_PATH} --directory . -b
-        ${BASEDIR} --capture --output-file ${Coverage_NAME}.capture
-    )
-    # add baseline counters
-    set(LCOV_BASELINE_COUNT_CMD
-        ${LCOV_PATH} ${Coverage_LCOV_ARGS} --gcov-tool ${GCOV_PATH} -a ${Coverage_NAME}.base
-        -a ${Coverage_NAME}.capture --output-file ${Coverage_NAME}.total
-    )
-    # filter collected data to final coverage report
-    set(LCOV_FILTER_CMD
-        ${LCOV_PATH} ${Coverage_LCOV_ARGS} --gcov-tool ${GCOV_PATH} --remove
-        ${Coverage_NAME}.total ${LCOV_EXCLUDES} --output-file ${Coverage_NAME}.info
-    )
-    # Generate HTML output
-    set(LCOV_GEN_HTML_CMD
-        ${GENHTML_PATH} ${GENHTML_EXTRA_ARGS} ${Coverage_GENHTML_ARGS} -o
-        ${Coverage_NAME} ${Coverage_NAME}.info
-    )
-    if(${Coverage_SONARQUBE})
-        # Generate SonarQube output
-        set(GCOVR_XML_CMD
-            ${GCOVR_PATH} --sonarqube ${Coverage_NAME}_sonarqube.xml -r ${BASEDIR} ${GCOVR_ADDITIONAL_ARGS}
-            ${GCOVR_EXCLUDE_ARGS} --object-directory=${PROJECT_BINARY_DIR}
-        )
-        set(GCOVR_XML_CMD_COMMAND
-            COMMAND ${GCOVR_XML_CMD}
-        )
-        set(GCOVR_XML_CMD_BYPRODUCTS ${Coverage_NAME}_sonarqube.xml)
-        set(GCOVR_XML_CMD_COMMENT COMMENT "SonarQube code coverage info report saved in ${Coverage_NAME}_sonarqube.xml.")
-    endif()
-
-
-    if(CODE_COVERAGE_VERBOSE)
-        message(STATUS "Executed command report")
-        message(STATUS "Command to clean up lcov: ")
-        string(REPLACE ";" " " LCOV_CLEAN_CMD_SPACED "${LCOV_CLEAN_CMD}")
-        message(STATUS "${LCOV_CLEAN_CMD_SPACED}")
-
-        message(STATUS "Command to create baseline: ")
-        string(REPLACE ";" " " LCOV_BASELINE_CMD_SPACED "${LCOV_BASELINE_CMD}")
-        message(STATUS "${LCOV_BASELINE_CMD_SPACED}")
-
-        message(STATUS "Command to run the tests: ")
-        string(REPLACE ";" " " LCOV_EXEC_TESTS_CMD_SPACED "${LCOV_EXEC_TESTS_CMD}")
-        message(STATUS "${LCOV_EXEC_TESTS_CMD_SPACED}")
-
-        message(STATUS "Command to capture counters and generate report: ")
-        string(REPLACE ";" " " LCOV_CAPTURE_CMD_SPACED "${LCOV_CAPTURE_CMD}")
-        message(STATUS "${LCOV_CAPTURE_CMD_SPACED}")
-
-        message(STATUS "Command to add baseline counters: ")
-        string(REPLACE ";" " " LCOV_BASELINE_COUNT_CMD_SPACED "${LCOV_BASELINE_COUNT_CMD}")
-        message(STATUS "${LCOV_BASELINE_COUNT_CMD_SPACED}")
-
-        message(STATUS "Command to filter collected data: ")
-        string(REPLACE ";" " " LCOV_FILTER_CMD_SPACED "${LCOV_FILTER_CMD}")
-        message(STATUS "${LCOV_FILTER_CMD_SPACED}")
-
-        message(STATUS "Command to generate lcov HTML output: ")
-        string(REPLACE ";" " " LCOV_GEN_HTML_CMD_SPACED "${LCOV_GEN_HTML_CMD}")
-        message(STATUS "${LCOV_GEN_HTML_CMD_SPACED}")
-
-        if(${Coverage_SONARQUBE})
-            message(STATUS "Command to generate SonarQube XML output: ")
-            string(REPLACE ";" " " GCOVR_XML_CMD_SPACED "${GCOVR_XML_CMD}")
-            message(STATUS "${GCOVR_XML_CMD_SPACED}")
-        endif()
-    endif()
-
-    # Setup target
-    add_custom_target(${Coverage_NAME}
-        COMMAND ${LCOV_CLEAN_CMD}
-        COMMAND ${LCOV_BASELINE_CMD}
-        COMMAND ${LCOV_EXEC_TESTS_CMD}
-        COMMAND ${LCOV_CAPTURE_CMD}
-        COMMAND ${LCOV_BASELINE_COUNT_CMD}
-        COMMAND ${LCOV_FILTER_CMD}
-        COMMAND ${LCOV_GEN_HTML_CMD}
-        ${GCOVR_XML_CMD_COMMAND}
-
-        # Set output files as GENERATED (will be removed on 'make clean')
-        BYPRODUCTS
-            ${Coverage_NAME}.base
-            ${Coverage_NAME}.capture
-            ${Coverage_NAME}.total
-            ${Coverage_NAME}.info
-            ${GCOVR_XML_CMD_BYPRODUCTS}
-            ${Coverage_NAME}/index.html
-        WORKING_DIRECTORY ${PROJECT_BINARY_DIR}
-        DEPENDS ${Coverage_DEPENDENCIES}
-        VERBATIM # Protect arguments to commands
-        COMMENT "Resetting code coverage counters to zero.\nProcessing code coverage counters and generating report."
-    )
-
-    # Show where to find the lcov info report
-    add_custom_command(TARGET ${Coverage_NAME} POST_BUILD
-        COMMAND ;
-        COMMENT "Lcov code coverage info report saved in ${Coverage_NAME}.info."
-        ${GCOVR_XML_CMD_COMMENT}
-    )
-
-    # Show info where to find the report
-    add_custom_command(TARGET ${Coverage_NAME} POST_BUILD
-        COMMAND ;
-        COMMENT "Open ./${Coverage_NAME}/index.html in your browser to view the coverage report."
-    )
-
-endfunction() # setup_target_for_coverage_lcov
-
-# Defines a target for running and collection code coverage information
-# Builds dependencies, runs the given executable and outputs reports.
-# NOTE! The executable should always have a ZERO as exit code otherwise
-# the coverage generation will not complete.
-#
-# setup_target_for_coverage_gcovr_xml(
-#     NAME ctest_coverage                    # New target name
-#     EXECUTABLE ctest -j ${PROCESSOR_COUNT} # Executable in PROJECT_BINARY_DIR
-#     DEPENDENCIES executable_target         # Dependencies to build first
-#     BASE_DIRECTORY "../"                   # Base directory for report
-#                                            #  (defaults to PROJECT_SOURCE_DIR)
-#     EXCLUDE "src/dir1/*" "src/dir2/*"      # Patterns to exclude (can be relative
-#                                            #  to BASE_DIRECTORY, with CMake 3.4+)
-# )
-# The user can set the variable GCOVR_ADDITIONAL_ARGS to supply additional flags to the
-# GCVOR command.
-function(setup_target_for_coverage_gcovr_xml)
-
-    set(options NONE)
-    set(oneValueArgs BASE_DIRECTORY NAME)
-    set(multiValueArgs EXCLUDE EXECUTABLE EXECUTABLE_ARGS DEPENDENCIES)
-    cmake_parse_arguments(Coverage "${options}" "${oneValueArgs}" "${multiValueArgs}" ${ARGN})
-
-    if(NOT GCOVR_PATH)
-        message(FATAL_ERROR "gcovr not found! Aborting...")
-    endif() # NOT GCOVR_PATH
-
-    # Set base directory (as absolute path), or default to PROJECT_SOURCE_DIR
-    if(DEFINED Coverage_BASE_DIRECTORY)
-        get_filename_component(BASEDIR ${Coverage_BASE_DIRECTORY} ABSOLUTE)
-    else()
-        set(BASEDIR ${PROJECT_SOURCE_DIR})
-    endif()
-
-    # Collect excludes (CMake 3.4+: Also compute absolute paths)
-    set(GCOVR_EXCLUDES "")
-    foreach(EXCLUDE ${Coverage_EXCLUDE} ${COVERAGE_EXCLUDES} ${COVERAGE_GCOVR_EXCLUDES})
-        if(CMAKE_VERSION VERSION_GREATER 3.4)
-            get_filename_component(EXCLUDE ${EXCLUDE} ABSOLUTE BASE_DIR ${BASEDIR})
-        endif()
-        list(APPEND GCOVR_EXCLUDES "${EXCLUDE}")
-    endforeach()
-    list(REMOVE_DUPLICATES GCOVR_EXCLUDES)
-
-    # Combine excludes to several -e arguments
-    set(GCOVR_EXCLUDE_ARGS "")
-    foreach(EXCLUDE ${GCOVR_EXCLUDES})
-        list(APPEND GCOVR_EXCLUDE_ARGS "-e")
-        list(APPEND GCOVR_EXCLUDE_ARGS "${EXCLUDE}")
-    endforeach()
-
-    # Set up commands which will be run to generate coverage data
-    # Run tests
-    set(GCOVR_XML_EXEC_TESTS_CMD
-        ${Coverage_EXECUTABLE} ${Coverage_EXECUTABLE_ARGS}
-    )
-    # Running gcovr
-    set(GCOVR_XML_CMD
-        ${GCOVR_PATH} --xml ${Coverage_NAME}.xml -r ${BASEDIR} ${GCOVR_ADDITIONAL_ARGS}
-        ${GCOVR_EXCLUDE_ARGS} --object-directory=${PROJECT_BINARY_DIR}
-    )
-
-    if(CODE_COVERAGE_VERBOSE)
-        message(STATUS "Executed command report")
-
-        message(STATUS "Command to run tests: ")
-        string(REPLACE ";" " " GCOVR_XML_EXEC_TESTS_CMD_SPACED "${GCOVR_XML_EXEC_TESTS_CMD}")
-        message(STATUS "${GCOVR_XML_EXEC_TESTS_CMD_SPACED}")
-
-        message(STATUS "Command to generate gcovr XML coverage data: ")
-        string(REPLACE ";" " " GCOVR_XML_CMD_SPACED "${GCOVR_XML_CMD}")
-        message(STATUS "${GCOVR_XML_CMD_SPACED}")
-    endif()
-
-    add_custom_target(${Coverage_NAME}
-        COMMAND ${GCOVR_XML_EXEC_TESTS_CMD}
-        COMMAND ${GCOVR_XML_CMD}
-
-        BYPRODUCTS ${Coverage_NAME}.xml
-        WORKING_DIRECTORY ${PROJECT_BINARY_DIR}
-        DEPENDS ${Coverage_DEPENDENCIES}
-        VERBATIM # Protect arguments to commands
-        COMMENT "Running gcovr to produce Cobertura code coverage report."
-    )
-
-    # Show info where to find the report
-    add_custom_command(TARGET ${Coverage_NAME} POST_BUILD
-        COMMAND ;
-        COMMENT "Cobertura code coverage report saved in ${Coverage_NAME}.xml."
-    )
-endfunction() # setup_target_for_coverage_gcovr_xml
-
-# Defines a target for running and collection code coverage information
-# Builds dependencies, runs the given executable and outputs reports.
-# NOTE! The executable should always have a ZERO as exit code otherwise
-# the coverage generation will not complete.
-#
-# setup_target_for_coverage_gcovr_html(
-#     NAME ctest_coverage                    # New target name
-#     EXECUTABLE ctest -j ${PROCESSOR_COUNT} # Executable in PROJECT_BINARY_DIR
-#     DEPENDENCIES executable_target         # Dependencies to build first
-#     BASE_DIRECTORY "../"                   # Base directory for report
-#                                            #  (defaults to PROJECT_SOURCE_DIR)
-#     EXCLUDE "src/dir1/*" "src/dir2/*"      # Patterns to exclude (can be relative
-#                                            #  to BASE_DIRECTORY, with CMake 3.4+)
-# )
-# The user can set the variable GCOVR_ADDITIONAL_ARGS to supply additional flags to the
-# GCVOR command.
-function(setup_target_for_coverage_gcovr_html)
-
-    set(options NONE)
-    set(oneValueArgs BASE_DIRECTORY NAME)
-    set(multiValueArgs EXCLUDE EXECUTABLE EXECUTABLE_ARGS DEPENDENCIES)
-    cmake_parse_arguments(Coverage "${options}" "${oneValueArgs}" "${multiValueArgs}" ${ARGN})
-
-    if(NOT GCOVR_PATH)
-        message(FATAL_ERROR "gcovr not found! Aborting...")
-    endif() # NOT GCOVR_PATH
-
-    # Set base directory (as absolute path), or default to PROJECT_SOURCE_DIR
-    if(DEFINED Coverage_BASE_DIRECTORY)
-        get_filename_component(BASEDIR ${Coverage_BASE_DIRECTORY} ABSOLUTE)
-    else()
-        set(BASEDIR ${PROJECT_SOURCE_DIR})
-    endif()
-
-    # Collect excludes (CMake 3.4+: Also compute absolute paths)
-    set(GCOVR_EXCLUDES "")
-    foreach(EXCLUDE ${Coverage_EXCLUDE} ${COVERAGE_EXCLUDES} ${COVERAGE_GCOVR_EXCLUDES})
-        if(CMAKE_VERSION VERSION_GREATER 3.4)
-            get_filename_component(EXCLUDE ${EXCLUDE} ABSOLUTE BASE_DIR ${BASEDIR})
-        endif()
-        list(APPEND GCOVR_EXCLUDES "${EXCLUDE}")
-    endforeach()
-    list(REMOVE_DUPLICATES GCOVR_EXCLUDES)
-
-    # Combine excludes to several -e arguments
-    set(GCOVR_EXCLUDE_ARGS "")
-    foreach(EXCLUDE ${GCOVR_EXCLUDES})
-        list(APPEND GCOVR_EXCLUDE_ARGS "-e")
-        list(APPEND GCOVR_EXCLUDE_ARGS "${EXCLUDE}")
-    endforeach()
-
-    # Set up commands which will be run to generate coverage data
-    # Run tests
-    set(GCOVR_HTML_EXEC_TESTS_CMD
-        ${Coverage_EXECUTABLE} ${Coverage_EXECUTABLE_ARGS}
-    )
-    # Create folder
-    set(GCOVR_HTML_FOLDER_CMD
-        ${CMAKE_COMMAND} -E make_directory ${PROJECT_BINARY_DIR}/${Coverage_NAME}
-    )
-    # Running gcovr
-    set(GCOVR_HTML_CMD
-        ${GCOVR_PATH} --html ${Coverage_NAME}/index.html --html-details -r ${BASEDIR} ${GCOVR_ADDITIONAL_ARGS}
-        ${GCOVR_EXCLUDE_ARGS} --object-directory=${PROJECT_BINARY_DIR}
-    )
-
-    if(CODE_COVERAGE_VERBOSE)
-        message(STATUS "Executed command report")
-
-        message(STATUS "Command to run tests: ")
-        string(REPLACE ";" " " GCOVR_HTML_EXEC_TESTS_CMD_SPACED "${GCOVR_HTML_EXEC_TESTS_CMD}")
-        message(STATUS "${GCOVR_HTML_EXEC_TESTS_CMD_SPACED}")
-
-        message(STATUS "Command to create a folder: ")
-        string(REPLACE ";" " " GCOVR_HTML_FOLDER_CMD_SPACED "${GCOVR_HTML_FOLDER_CMD}")
-        message(STATUS "${GCOVR_HTML_FOLDER_CMD_SPACED}")
-
-        message(STATUS "Command to generate gcovr HTML coverage data: ")
-        string(REPLACE ";" " " GCOVR_HTML_CMD_SPACED "${GCOVR_HTML_CMD}")
-        message(STATUS "${GCOVR_HTML_CMD_SPACED}")
-    endif()
-
-    add_custom_target(${Coverage_NAME}
-        COMMAND ${GCOVR_HTML_EXEC_TESTS_CMD}
-        COMMAND ${GCOVR_HTML_FOLDER_CMD}
-        COMMAND ${GCOVR_HTML_CMD}
-
-        BYPRODUCTS ${PROJECT_BINARY_DIR}/${Coverage_NAME}/index.html  # report directory
-        WORKING_DIRECTORY ${PROJECT_BINARY_DIR}
-        DEPENDS ${Coverage_DEPENDENCIES}
-        VERBATIM # Protect arguments to commands
-        COMMENT "Running gcovr to produce HTML code coverage report."
-    )
-
-    # Show info where to find the report
-    add_custom_command(TARGET ${Coverage_NAME} POST_BUILD
-        COMMAND ;
-        COMMENT "Open ./${Coverage_NAME}/index.html in your browser to view the coverage report."
-    )
-
-endfunction() # setup_target_for_coverage_gcovr_html
-
-# Defines a target for running and collection code coverage information
-# Builds dependencies, runs the given executable and outputs reports.
-# NOTE! The executable should always have a ZERO as exit code otherwise
-# the coverage generation will not complete.
-#
-# setup_target_for_coverage_fastcov(
-#     NAME testrunner_coverage                    # New target name
-#     EXECUTABLE testrunner -j ${PROCESSOR_COUNT} # Executable in PROJECT_BINARY_DIR
-#     DEPENDENCIES testrunner                     # Dependencies to build first
-#     BASE_DIRECTORY "../"                        # Base directory for report
-#                                                 #  (defaults to PROJECT_SOURCE_DIR)
-#     EXCLUDE "src/dir1/" "src/dir2/"             # Patterns to exclude.
-#     NO_DEMANGLE                                 # Don't demangle C++ symbols
-#                                                 #  even if c++filt is found
-#     SKIP_HTML                                   # Don't create html report
-#     POST_CMD perl -i -pe s!${PROJECT_SOURCE_DIR}/!!g ctest_coverage.json  # E.g. for stripping source dir from file paths
-# )
-function(setup_target_for_coverage_fastcov)
-
-    set(options NO_DEMANGLE SKIP_HTML)
-    set(oneValueArgs BASE_DIRECTORY NAME)
-    set(multiValueArgs EXCLUDE EXECUTABLE EXECUTABLE_ARGS DEPENDENCIES FASTCOV_ARGS GENHTML_ARGS POST_CMD)
-    cmake_parse_arguments(Coverage "${options}" "${oneValueArgs}" "${multiValueArgs}" ${ARGN})
-
-    if(NOT FASTCOV_PATH)
-        message(FATAL_ERROR "fastcov not found! Aborting...")
-    endif()
-
-    if(NOT Coverage_SKIP_HTML AND NOT GENHTML_PATH)
-        message(FATAL_ERROR "genhtml not found! Aborting...")
-    endif()
-
-    # Set base directory (as absolute path), or default to PROJECT_SOURCE_DIR
-    if(Coverage_BASE_DIRECTORY)
-        get_filename_component(BASEDIR ${Coverage_BASE_DIRECTORY} ABSOLUTE)
-    else()
-        set(BASEDIR ${PROJECT_SOURCE_DIR})
-    endif()
-
-    # Collect excludes (Patterns, not paths, for fastcov)
-    set(FASTCOV_EXCLUDES "")
-    foreach(EXCLUDE ${Coverage_EXCLUDE} ${COVERAGE_EXCLUDES} ${COVERAGE_FASTCOV_EXCLUDES})
-        list(APPEND FASTCOV_EXCLUDES "${EXCLUDE}")
-    endforeach()
-    list(REMOVE_DUPLICATES FASTCOV_EXCLUDES)
-
-    # Conditional arguments
-    if(CPPFILT_PATH AND NOT ${Coverage_NO_DEMANGLE})
-        set(GENHTML_EXTRA_ARGS "--demangle-cpp")
-    endif()
-
-    # Set up commands which will be run to generate coverage data
-    set(FASTCOV_EXEC_TESTS_CMD ${Coverage_EXECUTABLE} ${Coverage_EXECUTABLE_ARGS})
-
-    set(FASTCOV_CAPTURE_CMD ${FASTCOV_PATH} ${Coverage_FASTCOV_ARGS} --gcov ${GCOV_PATH}
-        --search-directory ${BASEDIR}
-        --process-gcno
-        --output ${Coverage_NAME}.json
-        --exclude ${FASTCOV_EXCLUDES}
-    )
-
-    set(FASTCOV_CONVERT_CMD ${FASTCOV_PATH}
-        -C ${Coverage_NAME}.json --lcov --output ${Coverage_NAME}.info
-    )
-
-    if(Coverage_SKIP_HTML)
-        set(FASTCOV_HTML_CMD ";")
-    else()
-        set(FASTCOV_HTML_CMD ${GENHTML_PATH} ${GENHTML_EXTRA_ARGS} ${Coverage_GENHTML_ARGS}
-            -o ${Coverage_NAME} ${Coverage_NAME}.info
-        )
-    endif()
-
-    set(FASTCOV_POST_CMD ";")
-    if(Coverage_POST_CMD)
-        set(FASTCOV_POST_CMD ${Coverage_POST_CMD})
-    endif()
-
-    if(CODE_COVERAGE_VERBOSE)
-        message(STATUS "Code coverage commands for target ${Coverage_NAME} (fastcov):")
-
-        message("   Running tests:")
-        string(REPLACE ";" " " FASTCOV_EXEC_TESTS_CMD_SPACED "${FASTCOV_EXEC_TESTS_CMD}")
-        message("     ${FASTCOV_EXEC_TESTS_CMD_SPACED}")
-
-        message("   Capturing fastcov counters and generating report:")
-        string(REPLACE ";" " " FASTCOV_CAPTURE_CMD_SPACED "${FASTCOV_CAPTURE_CMD}")
-        message("     ${FASTCOV_CAPTURE_CMD_SPACED}")
-
-        message("   Converting fastcov .json to lcov .info:")
-        string(REPLACE ";" " " FASTCOV_CONVERT_CMD_SPACED "${FASTCOV_CONVERT_CMD}")
-        message("     ${FASTCOV_CONVERT_CMD_SPACED}")
-
-        if(NOT Coverage_SKIP_HTML)
-            message("   Generating HTML report: ")
-            string(REPLACE ";" " " FASTCOV_HTML_CMD_SPACED "${FASTCOV_HTML_CMD}")
-            message("     ${FASTCOV_HTML_CMD_SPACED}")
-        endif()
-        if(Coverage_POST_CMD)
-            message("   Running post command: ")
-            string(REPLACE ";" " " FASTCOV_POST_CMD_SPACED "${FASTCOV_POST_CMD}")
-            message("     ${FASTCOV_POST_CMD_SPACED}")
-        endif()
-    endif()
-
-    # Setup target
-    add_custom_target(${Coverage_NAME}
-
-        # Cleanup fastcov
-        COMMAND ${FASTCOV_PATH} ${Coverage_FASTCOV_ARGS} --gcov ${GCOV_PATH}
-            --search-directory ${BASEDIR}
-            --zerocounters
-
-        COMMAND ${FASTCOV_EXEC_TESTS_CMD}
-        COMMAND ${FASTCOV_CAPTURE_CMD}
-        COMMAND ${FASTCOV_CONVERT_CMD}
-        COMMAND ${FASTCOV_HTML_CMD}
-        COMMAND ${FASTCOV_POST_CMD}
-
-        # Set output files as GENERATED (will be removed on 'make clean')
-        BYPRODUCTS
-             ${Coverage_NAME}.info
-             ${Coverage_NAME}.json
-             ${Coverage_NAME}/index.html  # report directory
-
-        WORKING_DIRECTORY ${PROJECT_BINARY_DIR}
-        DEPENDS ${Coverage_DEPENDENCIES}
-        VERBATIM # Protect arguments to commands
-        COMMENT "Resetting code coverage counters to zero. Processing code coverage counters and generating report."
-    )
-
-    set(INFO_MSG "fastcov code coverage info report saved in ${Coverage_NAME}.info and ${Coverage_NAME}.json.")
-    if(NOT Coverage_SKIP_HTML)
-        string(APPEND INFO_MSG " Open ${PROJECT_BINARY_DIR}/${Coverage_NAME}/index.html in your browser to view the coverage report.")
-    endif()
-    # Show where to find the fastcov info report
-    add_custom_command(TARGET ${Coverage_NAME} POST_BUILD
-        COMMAND ${CMAKE_COMMAND} -E echo ${INFO_MSG}
-    )
-
-endfunction() # setup_target_for_coverage_fastcov
-
-function(append_coverage_compiler_flags)
-    set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${COVERAGE_COMPILER_FLAGS}" PARENT_SCOPE)
-    set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${COVERAGE_COMPILER_FLAGS}" PARENT_SCOPE)
-    set(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} ${COVERAGE_COMPILER_FLAGS}" PARENT_SCOPE)
-    message(STATUS "Appending code coverage compiler flags: ${COVERAGE_COMPILER_FLAGS}")
-endfunction() # append_coverage_compiler_flags
-
-# Setup coverage for specific library
-function(append_coverage_compiler_flags_to_target name)
-    separate_arguments(_flag_list NATIVE_COMMAND "${COVERAGE_COMPILER_FLAGS}")
-    target_compile_options(${name} PRIVATE ${_flag_list})
-    if(CMAKE_C_COMPILER_ID STREQUAL "GNU" OR CMAKE_Fortran_COMPILER_ID STREQUAL "GNU")
-        target_link_libraries(${name} PRIVATE gcov)
-    endif()
-endfunction()

cmake/modules/StaticAnalyzers.cmake

@@ -1,22 +0,0 @@
-if(ENABLE_CLANG_TIDY)
-    find_program(CLANG_TIDY_COMMAND NAMES clang-tidy)
-
-    if(NOT CLANG_TIDY_COMMAND)
-        message(WARNING "🔴 CMake_RUN_CLANG_TIDY is ON but clang-tidy is not found!")
-        set(CMAKE_CXX_CLANG_TIDY "" CACHE STRING "" FORCE)
-    else()
-    
-        message(STATUS "🟢 CMake_RUN_CLANG_TIDY is ON")
-        set(CLANGTIDY_EXTRA_ARGS
-            "-extra-arg=-Wno-unknown-warning-option"
-        )
-        set(CMAKE_CXX_CLANG_TIDY "${CLANG_TIDY_COMMAND};-p=${CMAKE_BINARY_DIR};${CLANGTIDY_EXTRA_ARGS}" CACHE STRING "" FORCE)
-
-        add_custom_target(clang-tidy
-            COMMAND ${CMAKE_COMMAND} --build ${CMAKE_BINARY_DIR} --target ${CMAKE_PROJECT_NAME}
-            COMMAND ${CMAKE_COMMAND} --build ${CMAKE_BINARY_DIR} --target clang-tidy
-            COMMENT "Running clang-tidy..."
-        )
-       set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
-    endif()
-endif(ENABLE_CLANG_TIDY)

conandata.yml

@@ -0,0 +1,10 @@
+sources:
+  "1.1.2":
+    url: "https://github.com/rmontanana/BayesNet/archive/v1.1.2.tar.gz"
+    sha256: "placeholder_sha256"  # Replace with actual SHA256 when releasing
+  "1.0.7":
+    url: "https://github.com/rmontanana/BayesNet/archive/v1.0.7.tar.gz"
+    sha256: "placeholder_sha256"  # Replace with actual SHA256 when releasing
+
+patches:
+  # Add patches here if needed for specific versions

conanfile.py

@@ -0,0 +1,93 @@
+import os, re, pathlib
+from conan import ConanFile
+from conan.tools.cmake import CMakeToolchain, CMake, cmake_layout, CMakeDeps
+from conan.tools.files import copy
+
+class BayesNetConan(ConanFile):
+    name = "bayesnet"
+    settings = "os", "compiler", "build_type", "arch"
+    options = {
+        "shared": [True, False],
+        "fPIC": [True, False],
+        "enable_testing": [True, False],
+        "enable_coverage": [True, False]
+    }
+    default_options = {
+        "shared": False,
+        "fPIC": True,
+        "enable_testing": False,
+        "enable_coverage": False
+    }
+    
+    # Sources are located in the same place as this recipe, copy them to the recipe
+    exports_sources = "CMakeLists.txt", "bayesnet/*", "config/*", "cmake/*", "docs/*", "tests/*", "bayesnetConfig.cmake.in"
+    
+    def set_version(self) -> None:
+        cmake = pathlib.Path(self.recipe_folder) / "CMakeLists.txt"
+        text  = cmake.read_text(encoding="utf-8")
+
+        # Accept either: project(foo VERSION 1.2.3)  or  set(foo_VERSION 1.2.3)
+        match = re.search(
+            r"""project\s*\([^\)]*VERSION\s+([0-9]+\.[0-9]+\.[0-9]+)""",
+            text, re.IGNORECASE | re.VERBOSE
+        )
+        if match:
+            self.version = match.group(1)
+        else:
+            raise Exception("Version not found in CMakeLists.txt")
+        self.version = match.group(1) 
+
+    def config_options(self):
+        if self.settings.os == "Windows":
+            del self.options.fPIC
+    
+    def configure(self):
+        if self.options.shared:
+            self.options.rm_safe("fPIC")
+    
+    def requirements(self):
+        # Core dependencies
+        self.requires("libtorch/2.7.0")
+        self.requires("nlohmann_json/3.11.3")
+        self.requires("folding/1.1.1")  # Custom package
+        self.requires("fimdlp/2.1.0")   # Custom package  
+    
+    def build_requirements(self):
+        self.build_requires("cmake/[>=3.27]")
+        self.test_requires("arff-files/1.2.0") # Custom package
+        self.test_requires("catch2/3.8.1")
+    
+    def layout(self):
+        cmake_layout(self)
+    
+    def generate(self):
+        deps = CMakeDeps(self)
+        deps.generate()
+        tc = CMakeToolchain(self)
+        tc.variables["ENABLE_TESTING"] = self.options.enable_testing
+        tc.variables["CODE_COVERAGE"] = self.options.enable_coverage
+        tc.generate()
+    
+    def build(self):
+        cmake = CMake(self)
+        cmake.configure()
+        cmake.build()
+        
+        if self.options.enable_testing:
+            # Run tests only if we're building with testing enabled
+            self.run("ctest --output-on-failure", cwd=self.build_folder)
+    
+    def package(self):
+        copy(self, "LICENSE", src=self.source_folder, dst=os.path.join(self.package_folder, "licenses"))
+        cmake = CMake(self)
+        cmake.install()
+    
+    def package_info(self):
+        self.cpp_info.libs = ["bayesnet"]
+        self.cpp_info.includedirs = ["include"]
+        self.cpp_info.set_property("cmake_find_mode", "both")
+        self.cpp_info.set_property("cmake_target_name", "bayesnet::bayesnet")
+        
+        # Add compiler flags that might be needed
+        if self.settings.os == "Linux":
+            self.cpp_info.system_libs = ["pthread"]

config/config.h.in

@@ -3,10 +3,6 @@
 #include <string>
 #include <string_view>
 
-#define PROJECT_VERSION_MAJOR @PROJECT_VERSION_MAJOR@
-#define PROJECT_VERSION_MINOR @PROJECT_VERSION_MINOR@
-#define PROJECT_VERSION_PATCH @PROJECT_VERSION_PATCH@
-
 static constexpr std::string_view project_name = "@PROJECT_NAME@";
 static constexpr std::string_view project_version = "@PROJECT_VERSION@";
 static constexpr std::string_view project_description = "@PROJECT_DESCRIPTION@";

sample/CMakeLists.txt

@@ -4,37 +4,19 @@ project(bayesnet_sample VERSION 0.1.0 LANGUAGES CXX)
 
 set(CMAKE_CXX_STANDARD 17)
 
-set(CMAKE_BUILD_TYPE Release)
-
 find_package(Torch CONFIG REQUIRED)
 find_package(fimdlp CONFIG REQUIRED)
 find_package(folding CONFIG REQUIRED)
 find_package(arff-files CONFIG REQUIRED)
-find_package(nlohmann_json CONFIG REQUIRED)
+find_package(nlohmann_json REQUIRED)
-
+find_package(bayesnet CONFIG REQUIRED)
-option(BAYESNET_VCPKG_CONFIG "Use vcpkg config for BayesNet" ON)
-
-if (BAYESNET_VCPKG_CONFIG)
-  message(STATUS "Using BayesNet vcpkg config")
-  find_package(bayesnet CONFIG REQUIRED)
-  set(BayesNet_LIBRARIES bayesnet::bayesnet)
-else(BAYESNET_VCPKG_CONFIG)
-  message(STATUS "Using BayesNet local library config")
-  find_library(bayesnet NAMES libbayesnet bayesnet libbayesnet.a PATHS ${Platform_SOURCE_DIR}/../lib/lib REQUIRED)
-  find_path(Bayesnet_INCLUDE_DIRS REQUIRED NAMES bayesnet PATHS ${Platform_SOURCE_DIR}/../lib/include)
-  add_library(bayesnet::bayesnet UNKNOWN IMPORTED)
-  set_target_properties(bayesnet::bayesnet PROPERTIES
-    IMPORTED_LOCATION ${bayesnet}
-    INTERFACE_INCLUDE_DIRECTORIES ${Bayesnet_INCLUDE_DIRS}
-  )
-endif(BAYESNET_VCPKG_CONFIG)
-message(STATUS "BayesNet: ${bayesnet}")
 
 add_executable(bayesnet_sample sample.cc) 
 target_link_libraries(bayesnet_sample PRIVATE 
     fimdlp::fimdlp 
     arff-files::arff-files
-    "${TORCH_LIBRARIES}" 
+    torch::torch
     bayesnet::bayesnet
     folding::folding
+    nlohmann_json::nlohmann_json
 )

sample/CMakeUserPresets.json

@@ -0,0 +1,9 @@
+{
+    "version": 4,
+    "vendor": {
+        "conan": {}
+    },
+    "include": [
+        "build/CMakePresets.json"
+    ]
+}

sample/conanfile.txt

@@ -0,0 +1,14 @@
+[requires]
+libtorch/2.7.0
+arff-files/1.2.0
+fimdlp/2.1.0
+folding/1.1.1
+bayesnet/1.2.0
+nlohmann_json/3.11.3
+
+[generators]
+CMakeToolchain
+CMakeDeps
+
+[options]
+libtorch/2.7.0:shared=True

sample/sample.cc

@@ -6,7 +6,7 @@
 
 #include <map>
 #include <string>
-#include <ArffFiles/ArffFiles.hpp>
+#include <ArffFiles.hpp>
 #include <fimdlp/CPPFImdlp.h>
 #include <bayesnet/classifiers/TANLd.h>
 #include <bayesnet/classifiers/KDBLd.h>

tests/CMakeLists.txt

@@ -2,12 +2,13 @@ if(ENABLE_TESTING)
     include_directories(
         ${BayesNet_SOURCE_DIR}
         ${CMAKE_BINARY_DIR}/configured_files/include
+        ${nlohmann_json_INCLUDE_DIRS}
     )
     file(GLOB_RECURSE BayesNet_SOURCES "${bayesnet_SOURCE_DIR}/bayesnet/*.cc")
     add_executable(TestBayesNet TestBayesNetwork.cc TestBayesNode.cc TestBayesClassifier.cc TestXSPnDE.cc TestXBA2DE.cc 
         TestBayesModels.cc TestBayesMetrics.cc TestFeatureSelection.cc TestBoostAODE.cc TestXBAODE.cc TestA2DE.cc 
         TestUtils.cc TestBayesEnsemble.cc TestModulesVersions.cc TestBoostA2DE.cc TestMST.cc TestXSPODE.cc ${BayesNet_SOURCES})
-    target_link_libraries(TestBayesNet PUBLIC "${TORCH_LIBRARIES}" fimdlp::fimdlp PRIVATE Catch2::Catch2WithMain)
+    target_link_libraries(TestBayesNet PUBLIC "${TORCH_LIBRARIES}" fimdlp::fimdlp PRIVATE Catch2::Catch2WithMain folding::folding)
     add_test(NAME BayesNetworkTest COMMAND TestBayesNet)
     add_test(NAME A2DE COMMAND TestBayesNet "[A2DE]")
     add_test(NAME BoostA2DE COMMAND TestBayesNet "[BoostA2DE]")

tests/TestBayesModels.cc

@@ -20,7 +20,7 @@
 #include "bayesnet/ensembles/AODELd.h"
 #include "bayesnet/ensembles/BoostAODE.h"
 
-const std::string ACTUAL_VERSION = "1.1.2";
+const std::string ACTUAL_VERSION = "1.2.0";
 
 TEST_CASE("Test Bayesian Classifiers score & version", "[Models]")
 {

tests/TestModulesVersions.cc

@@ -16,10 +16,10 @@
 #include "TestUtils.h"
 
 std::map<std::string, std::string> modules = {
-    { "mdlp", "2.0.1" },
+    { "mdlp", "2.1.0" },
     { "Folding", "1.1.1" },
     { "json", "3.11" },
-    { "ArffFiles", "1.1.0" }
+    { "ArffFiles", "1.2.0" }
 };
 
 TEST_CASE("MDLP", "[Modules]")

tests/TestUtils.h

@@ -11,7 +11,7 @@
 #include <vector>
 #include <map>
 #include <tuple>
-#include <ArffFiles/ArffFiles.hpp>
+#include <ArffFiles.hpp>
 #include <fimdlp/CPPFImdlp.h>
 #include <folding.hpp>
 #include <bayesnet/network/Network.h>

vcpkg-configuration.json

@@ -1,21 +0,0 @@
-{
-  "default-registry": {
-    "kind": "git",
-    "baseline": "760bfd0c8d7c89ec640aec4df89418b7c2745605",
-    "repository": "https://github.com/microsoft/vcpkg"
-  },
-  "registries": [
-    {
-      "kind": "git",
-      "repository": "https://github.com/rmontanana/vcpkg-stash",
-      "baseline": "1ea69243c0e8b0de77c9d1dd6e1d7593ae7f3627",
-      "packages": [
-        "arff-files",
-        "fimdlp",
-        "libtorch-bin",
-        "bayesnet",
-        "folding"
-      ]
-    }
-  ]
-}

vcpkg.json

@@ -1,40 +0,0 @@
-{
-  "name": "bayesnet",
-  "version": "1.0.7",
-  "description": "Bayesian Network C++ Library",
-  "license": "MIT",
-  "dependencies": [
-    "arff-files",
-    "folding",
-    "fimdlp",
-    "libtorch-bin",
-    "nlohmann-json",
-    "catch2"
-  ],
-  "overrides": [
-    {
-      "name": "arff-files",
-      "version": "1.1.0"
-    },
-    {
-      "name": "fimdlp",
-      "version": "2.0.1"
-    },
-    {
-      "name": "libtorch-bin",
-      "version": "2.7.0"
-    },
-    {
-      "name": "folding",
-      "version": "1.1.1"
-    },
-    {
-      "name": "nlohmann-json",
-      "version": "3.11.3"
-    },
-    {
-      "name": "catch2",
-      "version": "3.8.1"
-    }
-  ]
-}