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7a69526409
Author | SHA1 | Date | |
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7a69526409
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9c1c427620
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c408352daa
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492
ArffFiles.hpp
492
ArffFiles.hpp
@@ -4,19 +4,41 @@
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#include <string>
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#include <vector>
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#include <map>
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#include <set>
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#include <sstream>
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#include <fstream>
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#include <cctype> // std::isdigit
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#include <algorithm> // std::all_of std::transform
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// Summary information structure for ARFF files
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struct ArffSummary {
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size_t numSamples; // Number of data samples
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size_t numFeatures; // Number of feature attributes (excluding class)
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size_t numClasses; // Number of different class values
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std::string className; // Name of the class attribute
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std::string classType; // Type/values of the class attribute
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std::vector<std::string> classLabels; // List of unique class values
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std::vector<std::pair<std::string, std::string>> featureInfo; // Feature names and types
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};
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class ArffFiles {
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const std::string VERSION = "1.1.0";
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public:
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ArffFiles() = default;
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void load(const std::string& fileName, bool classLast = true)
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{
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if (fileName.empty()) {
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throw std::invalid_argument("File name cannot be empty");
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}
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int labelIndex;
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loadCommon(fileName);
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// Validate we have attributes before accessing them
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if (attributes.empty()) {
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throw std::invalid_argument("No attributes found in file");
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}
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if (classLast) {
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className = std::get<0>(attributes.back());
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classType = std::get<1>(attributes.back());
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@@ -28,30 +50,82 @@ public:
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attributes.erase(attributes.begin());
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labelIndex = 0;
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}
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// Validate class name is not empty
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if (className.empty()) {
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throw std::invalid_argument("Class attribute name cannot be empty");
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}
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preprocessDataset(labelIndex);
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generateDataset(labelIndex);
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}
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void load(const std::string& fileName, const std::string& name)
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{
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if (fileName.empty()) {
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throw std::invalid_argument("File name cannot be empty");
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}
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if (name.empty()) {
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throw std::invalid_argument("Class name cannot be empty");
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}
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int labelIndex;
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loadCommon(fileName);
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// Validate we have attributes before searching
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if (attributes.empty()) {
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throw std::invalid_argument("No attributes found in file");
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}
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bool found = false;
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for (int i = 0; i < attributes.size(); ++i) {
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for (size_t i = 0; i < attributes.size(); ++i) {
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if (attributes[i].first == name) {
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className = std::get<0>(attributes[i]);
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classType = std::get<1>(attributes[i]);
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attributes.erase(attributes.begin() + i);
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labelIndex = i;
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labelIndex = static_cast<int>(i);
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found = true;
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break;
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}
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}
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if (!found) {
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throw std::invalid_argument("Class name not found");
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throw std::invalid_argument("Class name '" + name + "' not found in attributes");
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}
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preprocessDataset(labelIndex);
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generateDataset(labelIndex);
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}
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// Static method to get summary information without loading all data (default: class is last)
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static ArffSummary summary(const std::string& fileName)
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{
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return summary(fileName, true);
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}
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// Static method to get summary information without loading all data
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static ArffSummary summary(const std::string& fileName, bool classLast)
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{
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if (fileName.empty()) {
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throw std::invalid_argument("File name cannot be empty");
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}
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return summarizeFile(fileName, classLast);
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}
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// Static method to get summary information with specified class attribute (const char* overload)
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static ArffSummary summary(const std::string& fileName, const char* className)
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{
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return summary(fileName, std::string(className));
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}
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// Static method to get summary information with specified class attribute
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static ArffSummary summary(const std::string& fileName, const std::string& className)
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{
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if (fileName.empty()) {
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throw std::invalid_argument("File name cannot be empty");
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}
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if (className.empty()) {
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throw std::invalid_argument("Class name cannot be empty");
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}
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return summarizeFile(fileName, className);
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}
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std::vector<std::string> getLines() const { return lines; }
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unsigned long int getSize() const { return lines.size(); }
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std::string getClassName() const { return className; }
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@@ -66,7 +140,9 @@ public:
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return s;
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}
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std::vector<std::vector<float>>& getX() { return X; }
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const std::vector<std::vector<float>>& getX() const { return X; }
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std::vector<int>& getY() { return y; }
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const std::vector<int>& getY() const { return y; }
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std::map<std::string, bool> getNumericAttributes() const { return numeric_features; }
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std::vector<std::pair<std::string, std::string>> getAttributes() const { return attributes; };
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std::vector<std::string> split(const std::string& text, char delimiter)
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@@ -86,8 +162,7 @@ protected:
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std::vector<std::pair<std::string, std::string>> attributes;
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std::string className;
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std::string classType;
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std::vector<std::vector<float>> X;
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std::vector<std::vector<std::string>> Xs;
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std::vector<std::vector<float>> X; // X[feature][sample] - feature-major layout
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std::vector<int> y;
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std::map<std::string, std::vector<std::string>> states;
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private:
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@@ -128,41 +203,105 @@ private:
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}
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void generateDataset(int labelIndex)
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{
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X = std::vector<std::vector<float>>(attributes.size(), std::vector<float>(lines.size()));
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Xs = std::vector<std::vector<std::string>>(attributes.size(), std::vector<std::string>(lines.size()));
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auto yy = std::vector<std::string>(lines.size(), "");
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for (size_t i = 0; i < lines.size(); i++) {
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std::stringstream ss(lines[i]);
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std::string value;
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const size_t numSamples = lines.size();
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const size_t numFeatures = attributes.size();
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// Validate inputs
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if (numSamples == 0) {
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throw std::invalid_argument("No data samples found in file");
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}
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if (numFeatures == 0) {
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throw std::invalid_argument("No feature attributes found");
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}
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if (labelIndex < 0) {
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throw std::invalid_argument("Invalid label index: cannot be negative");
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}
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// Pre-allocate with feature-major layout: X[feature][sample]
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X.assign(numFeatures, std::vector<float>(numSamples));
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// Temporary storage for categorical data per feature (only for non-numeric features)
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std::vector<std::vector<std::string>> categoricalData(numFeatures);
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for (size_t i = 0; i < numFeatures; ++i) {
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if (!numeric_features[attributes[i].first]) {
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categoricalData[i].reserve(numSamples);
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}
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}
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std::vector<std::string> yy;
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yy.reserve(numSamples);
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// Parse each sample
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for (size_t sampleIdx = 0; sampleIdx < numSamples; ++sampleIdx) {
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const auto tokens = split(lines[sampleIdx], ',');
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// Validate token count matches expected number (features + class)
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const size_t expectedTokens = numFeatures + 1;
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if (tokens.size() != expectedTokens) {
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throw std::invalid_argument("Sample " + std::to_string(sampleIdx) + " has " + std::to_string(tokens.size()) + " tokens, expected " + std::to_string(expectedTokens));
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}
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int pos = 0;
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int xIndex = 0;
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auto tokens = split(lines[i], ',');
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int featureIdx = 0;
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for (const auto& token : tokens) {
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if (pos++ == labelIndex) {
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yy[i] = token;
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} else {
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if (numeric_features[attributes[xIndex].first]) {
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X[xIndex][i] = stof(token);
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} else {
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Xs[xIndex][i] = token;
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if (token.empty()) {
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throw std::invalid_argument("Empty class label at sample " + std::to_string(sampleIdx));
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}
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xIndex++;
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yy.push_back(token);
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} else {
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if (featureIdx >= static_cast<int>(numFeatures)) {
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throw std::invalid_argument("Too many feature values at sample " + std::to_string(sampleIdx));
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}
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const auto& featureName = attributes[featureIdx].first;
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if (numeric_features.at(featureName)) {
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// Parse numeric value with exception handling
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try {
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X[featureIdx][sampleIdx] = std::stof(token);
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}
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catch (const std::exception& e) {
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throw std::invalid_argument("Invalid numeric value '" + token + "' at sample " + std::to_string(sampleIdx) + ", feature " + featureName);
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}
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} else {
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// Store categorical value temporarily
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if (token.empty()) {
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throw std::invalid_argument("Empty categorical value at sample " + std::to_string(sampleIdx) + ", feature " + featureName);
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}
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categoricalData[featureIdx].push_back(token);
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}
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featureIdx++;
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}
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}
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}
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for (size_t i = 0; i < attributes.size(); i++) {
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if (!numeric_features[attributes[i].first]) {
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auto data = factorize(attributes[i].first, Xs[i]);
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std::transform(data.begin(), data.end(), X[i].begin(), [](int x) { return float(x);});
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// Convert categorical features to numeric
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for (size_t featureIdx = 0; featureIdx < numFeatures; ++featureIdx) {
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if (!numeric_features[attributes[featureIdx].first]) {
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const auto& featureName = attributes[featureIdx].first;
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auto encodedValues = factorize(featureName, categoricalData[featureIdx]);
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// Copy encoded values to X[feature][sample]
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for (size_t sampleIdx = 0; sampleIdx < numSamples; ++sampleIdx) {
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X[featureIdx][sampleIdx] = static_cast<float>(encodedValues[sampleIdx]);
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}
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}
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}
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y = factorize(className, yy);
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}
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void loadCommon(std::string fileName)
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{
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// Clear previous data
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lines.clear();
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attributes.clear();
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states.clear();
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numeric_features.clear();
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std::ifstream file(fileName);
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if (!file.is_open()) {
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throw std::invalid_argument("Unable to open file");
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throw std::invalid_argument("Unable to open file: " + fileName);
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}
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std::string line;
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std::string keyword;
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@@ -176,27 +315,316 @@ private:
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if (line.find("@attribute") != std::string::npos || line.find("@ATTRIBUTE") != std::string::npos) {
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std::stringstream ss(line);
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ss >> keyword >> attribute;
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type = "";
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while (ss >> type_w)
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type += type_w + " ";
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// Validate attribute name
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if (attribute.empty()) {
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throw std::invalid_argument("Empty attribute name in line: " + line);
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}
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// Check for duplicate attribute names
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for (const auto& existing : attributes) {
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if (existing.first == attribute) {
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throw std::invalid_argument("Duplicate attribute name: " + attribute);
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}
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}
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// Efficiently build type string
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std::ostringstream typeStream;
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while (ss >> type_w) {
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if (typeStream.tellp() > 0) typeStream << " ";
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typeStream << type_w;
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}
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type = typeStream.str();
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// Validate type is not empty
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if (type.empty()) {
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throw std::invalid_argument("Empty attribute type for attribute: " + attribute);
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}
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attributes.emplace_back(trim(attribute), trim(type));
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continue;
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}
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if (line[0] == '@') {
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continue;
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}
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if (line.find("?", 0) != std::string::npos) {
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// ignore lines with missing values
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// More sophisticated missing value detection
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// Skip lines with '?' not inside quoted strings
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if (containsMissingValue(line)) {
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continue;
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}
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lines.push_back(line);
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}
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file.close();
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// Final validation
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if (attributes.empty()) {
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throw std::invalid_argument("No attributes found in file");
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}
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if (lines.empty()) {
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throw std::invalid_argument("No data samples found in file");
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}
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// Initialize states for all attributes
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for (const auto& attribute : attributes) {
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states[attribute.first] = std::vector<std::string>();
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}
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if (attributes.empty())
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throw std::invalid_argument("No attributes found");
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}
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// Helper function for better missing value detection
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bool containsMissingValue(const std::string& line)
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{
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bool inQuotes = false;
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char quoteChar = '\0';
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for (size_t i = 0; i < line.length(); ++i) {
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char c = line[i];
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if (!inQuotes && (c == '\'' || c == '\"')) {
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inQuotes = true;
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quoteChar = c;
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} else if (inQuotes && c == quoteChar) {
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inQuotes = false;
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quoteChar = '\0';
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} else if (!inQuotes && c == '?') {
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// Found unquoted '?' - this is a missing value
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return true;
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}
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}
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return false;
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}
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// Static version of missing value detection for summary methods
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static bool containsMissingValueStatic(const std::string& line)
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{
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bool inQuotes = false;
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char quoteChar = '\0';
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for (size_t i = 0; i < line.length(); ++i) {
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char c = line[i];
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if (!inQuotes && (c == '\'' || c == '\"')) {
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inQuotes = true;
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quoteChar = c;
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} else if (inQuotes && c == quoteChar) {
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inQuotes = false;
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quoteChar = '\0';
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} else if (!inQuotes && c == '?') {
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// Found unquoted '?' - this is a missing value
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return true;
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}
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}
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return false;
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}
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// Helper function for summary with classLast parameter
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static ArffSummary summarizeFile(const std::string& fileName, bool classLast)
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{
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std::ifstream file(fileName);
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if (!file.is_open()) {
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throw std::invalid_argument("Unable to open file: " + fileName);
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}
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ArffSummary summary;
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std::vector<std::pair<std::string, std::string>> attributes;
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std::set<std::string> uniqueClasses;
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std::string line;
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size_t sampleCount = 0;
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// Parse header
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while (getline(file, line)) {
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if (line.empty() || line[0] == '%' || line == "\r" || line == " ") {
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continue;
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}
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if (line.find("@attribute") != std::string::npos || line.find("@ATTRIBUTE") != std::string::npos) {
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std::stringstream ss(line);
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std::string keyword, attribute, type_w;
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ss >> keyword >> attribute;
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if (attribute.empty()) {
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throw std::invalid_argument("Empty attribute name in line: " + line);
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}
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// Build type string
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std::ostringstream typeStream;
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while (ss >> type_w) {
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if (typeStream.tellp() > 0) typeStream << " ";
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typeStream << type_w;
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}
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std::string type = typeStream.str();
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if (type.empty()) {
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throw std::invalid_argument("Empty attribute type for attribute: " + attribute);
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}
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attributes.emplace_back(trim(attribute), trim(type));
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continue;
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}
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if (line[0] == '@') {
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continue;
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}
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// Start of data section
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break;
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}
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if (attributes.empty()) {
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throw std::invalid_argument("No attributes found in file");
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}
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// Determine class attribute
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if (classLast) {
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summary.className = attributes.back().first;
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summary.classType = attributes.back().second;
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attributes.pop_back();
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} else {
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summary.className = attributes.front().first;
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summary.classType = attributes.front().second;
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attributes.erase(attributes.begin());
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}
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summary.numFeatures = attributes.size();
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// Copy feature information
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for (const auto& attr : attributes) {
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summary.featureInfo.emplace_back(attr.first, attr.second);
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}
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// Count samples and collect unique class values
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do {
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if (!line.empty() && line[0] != '@' && line[0] != '%' && !containsMissingValueStatic(line)) {
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auto tokens = splitStatic(line, ',');
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if (!tokens.empty()) {
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std::string classValue;
|
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if (classLast) {
|
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classValue = trim(tokens.back());
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} else {
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classValue = trim(tokens.front());
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}
|
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if (!classValue.empty()) {
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uniqueClasses.insert(classValue);
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sampleCount++;
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}
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}
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}
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}
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while (getline(file, line));
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file.close();
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summary.numSamples = sampleCount;
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summary.numClasses = uniqueClasses.size();
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summary.classLabels.assign(uniqueClasses.begin(), uniqueClasses.end());
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return summary;
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}
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// Helper function for summary with className parameter
|
||||
static ArffSummary summarizeFile(const std::string& fileName, const std::string& className)
|
||||
{
|
||||
std::ifstream file(fileName);
|
||||
if (!file.is_open()) {
|
||||
throw std::invalid_argument("Unable to open file: " + fileName);
|
||||
}
|
||||
|
||||
ArffSummary summary;
|
||||
std::vector<std::pair<std::string, std::string>> attributes;
|
||||
std::set<std::string> uniqueClasses;
|
||||
std::string line;
|
||||
size_t sampleCount = 0;
|
||||
int classIndex = -1;
|
||||
|
||||
// Parse header
|
||||
while (getline(file, line)) {
|
||||
if (line.empty() || line[0] == '%' || line == "\r" || line == " ") {
|
||||
continue;
|
||||
}
|
||||
if (line.find("@attribute") != std::string::npos || line.find("@ATTRIBUTE") != std::string::npos) {
|
||||
std::stringstream ss(line);
|
||||
std::string keyword, attribute, type_w;
|
||||
ss >> keyword >> attribute;
|
||||
|
||||
if (attribute.empty()) {
|
||||
throw std::invalid_argument("Empty attribute name in line: " + line);
|
||||
}
|
||||
|
||||
// Build type string
|
||||
std::ostringstream typeStream;
|
||||
while (ss >> type_w) {
|
||||
if (typeStream.tellp() > 0) typeStream << " ";
|
||||
typeStream << type_w;
|
||||
}
|
||||
std::string type = typeStream.str();
|
||||
|
||||
if (type.empty()) {
|
||||
throw std::invalid_argument("Empty attribute type for attribute: " + attribute);
|
||||
}
|
||||
|
||||
attributes.emplace_back(trim(attribute), trim(type));
|
||||
|
||||
if (trim(attribute) == className) {
|
||||
classIndex = attributes.size() - 1;
|
||||
summary.className = trim(attribute);
|
||||
summary.classType = trim(type);
|
||||
}
|
||||
continue;
|
||||
}
|
||||
if (line[0] == '@') {
|
||||
continue;
|
||||
}
|
||||
// Start of data section
|
||||
break;
|
||||
}
|
||||
|
||||
if (attributes.empty()) {
|
||||
throw std::invalid_argument("No attributes found in file");
|
||||
}
|
||||
|
||||
if (classIndex == -1) {
|
||||
throw std::invalid_argument("Class name '" + className + "' not found in attributes");
|
||||
}
|
||||
|
||||
// Remove class attribute from features
|
||||
attributes.erase(attributes.begin() + classIndex);
|
||||
summary.numFeatures = attributes.size();
|
||||
|
||||
// Copy feature information
|
||||
for (const auto& attr : attributes) {
|
||||
summary.featureInfo.emplace_back(attr.first, attr.second);
|
||||
}
|
||||
|
||||
// Count samples and collect unique class values
|
||||
do {
|
||||
if (!line.empty() && line[0] != '@' && line[0] != '%' && !containsMissingValueStatic(line)) {
|
||||
auto tokens = splitStatic(line, ',');
|
||||
if (tokens.size() > static_cast<size_t>(classIndex)) {
|
||||
std::string classValue = trim(tokens[classIndex]);
|
||||
if (!classValue.empty()) {
|
||||
uniqueClasses.insert(classValue);
|
||||
sampleCount++;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
while (getline(file, line));
|
||||
|
||||
file.close();
|
||||
|
||||
summary.numSamples = sampleCount;
|
||||
summary.numClasses = uniqueClasses.size();
|
||||
summary.classLabels.assign(uniqueClasses.begin(), uniqueClasses.end());
|
||||
|
||||
return summary;
|
||||
}
|
||||
|
||||
// Static helper function for split (needed by summarizeFile)
|
||||
static std::vector<std::string> splitStatic(const std::string& text, char delimiter)
|
||||
{
|
||||
std::vector<std::string> result;
|
||||
std::stringstream ss(text);
|
||||
std::string token;
|
||||
while (std::getline(ss, token, delimiter)) {
|
||||
result.push_back(trim(token));
|
||||
}
|
||||
return result;
|
||||
}
|
||||
};
|
||||
|
||||
|
11
CHANGELOG.md
11
CHANGELOG.md
@@ -9,12 +9,17 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
|
||||
|
||||
### Added
|
||||
|
||||
- Refactored code to improve readability and maintainability
|
||||
- Improved error handling with exceptions
|
||||
- Claude TECHNICAL_REPORT.md for detailed analysis
|
||||
- Claude CLAUDE.md for AI engine usage
|
||||
- Actions to build and upload the conan package to Cimmeria
|
||||
- Method summary that returns the number of features, samples, and classes without loading the data
|
||||
|
||||
### Internal
|
||||
|
||||
- Refactored code to improve readability and maintainability
|
||||
- Improved error handling with exceptions
|
||||
- Actions to build and upload the conan package to Cimmeria
|
||||
- Eliminate redundant memory allocations and enhance memory usage
|
||||
- Enhance error handling with exceptions
|
||||
|
||||
|
||||
## [1.1.0] 2024-07-24 String Values in Features
|
||||
|
@@ -1,6 +1,7 @@
|
||||
#include <catch2/catch_test_macros.hpp>
|
||||
#include <catch2/catch_approx.hpp>
|
||||
#include <catch2/generators/catch_generators.hpp>
|
||||
#include <catch2/matchers/catch_matchers_string.hpp>
|
||||
#include "ArffFiles.hpp"
|
||||
#include "arffFiles_config.h"
|
||||
#include <iostream>
|
||||
@@ -13,6 +14,15 @@ public:
|
||||
std::string file_name = path + name + ".arff";
|
||||
return file_name;
|
||||
}
|
||||
|
||||
static std::string error_datasets(const std::string& name)
|
||||
{
|
||||
std::string path = { arffFiles_data_path.begin(), arffFiles_data_path.end() };
|
||||
// Replace "data/" with "error_data/"
|
||||
path = path.substr(0, path.length() - 5) + "error_data/";
|
||||
std::string file_name = path + name + ".arff";
|
||||
return file_name;
|
||||
}
|
||||
};
|
||||
|
||||
TEST_CASE("Version Test", "[ArffFiles]")
|
||||
@@ -34,15 +44,16 @@ TEST_CASE("Load Test", "[ArffFiles]")
|
||||
REQUIRE(arff.getLines().size() == 150);
|
||||
REQUIRE(arff.getLines()[0] == "5.1,3.5,1.4,0.2,Iris-setosa");
|
||||
REQUIRE(arff.getLines()[149] == "5.9,3.0,5.1,1.8,Iris-virginica");
|
||||
REQUIRE(arff.getX().size() == 4);
|
||||
REQUIRE(arff.getX().size() == 4); // 4 features
|
||||
for (int i = 0; i < 4; ++i) {
|
||||
REQUIRE(arff.getX()[i].size() == 150);
|
||||
REQUIRE(arff.getX()[i].size() == 150); // 150 samples per feature
|
||||
}
|
||||
// Test first 4 samples: X[feature][sample]
|
||||
auto expected = std::vector<std::vector<float>>{
|
||||
{5.1, 4.9, 4.7, 4.6},
|
||||
{3.5, 3.0, 3.2, 3.1},
|
||||
{1.4, 1.4, 1.3, 1.5},
|
||||
{0.2, 0.2, 0.2, 0.2}
|
||||
{5.1, 4.9, 4.7, 4.6}, // Feature 0 (sepallength)
|
||||
{3.5, 3.0, 3.2, 3.1}, // Feature 1 (sepalwidth)
|
||||
{1.4, 1.4, 1.3, 1.5}, // Feature 2 (petallength)
|
||||
{0.2, 0.2, 0.2, 0.2} // Feature 3 (petalwidth)
|
||||
};
|
||||
for (int i = 0; i < 4; ++i) {
|
||||
for (int j = 0; j < 4; ++j)
|
||||
@@ -79,15 +90,16 @@ TEST_CASE("Load with class name", "[ArffFiles]")
|
||||
REQUIRE(arff.getLines().size() == 214);
|
||||
REQUIRE(arff.getLines()[0] == "1.51793,12.79,3.5,1.12,73.03,0.64,8.77,0,0,'build wind float'");
|
||||
REQUIRE(arff.getLines()[149] == "1.51813,13.43,3.98,1.18,72.49,0.58,8.15,0,0,'build wind non-float'");
|
||||
REQUIRE(arff.getX().size() == 9);
|
||||
REQUIRE(arff.getX().size() == 9); // 9 features
|
||||
for (int i = 0; i < 9; ++i) {
|
||||
REQUIRE(arff.getX()[i].size() == 214);
|
||||
REQUIRE(arff.getX()[i].size() == 214); // 214 samples per feature
|
||||
}
|
||||
// Test first 4 samples: X[feature][sample]
|
||||
std::vector<std::vector<float>> expected = {
|
||||
{1.51793, 1.51643, 1.51793, 1.51299},
|
||||
{12.79, 12.16, 13.21, 14.4 },
|
||||
{3.5, 3.52, 3.48, 1.74},
|
||||
{1.12, 1.35, 1.41, 1.54}
|
||||
{1.51793, 1.51643, 1.51793, 1.51299}, // Feature 0
|
||||
{12.79, 12.16, 13.21, 14.4}, // Feature 1
|
||||
{3.5, 3.52, 3.48, 1.74}, // Feature 2
|
||||
{1.12, 1.35, 1.41, 1.54} // Feature 3
|
||||
};
|
||||
for (int i = 0; i < 4; ++i) {
|
||||
for (int j = 0; j < 4; ++j)
|
||||
@@ -146,3 +158,183 @@ TEST_CASE("Adult dataset", "[ArffFiles]")
|
||||
REQUIRE(X[13][0] == 0);
|
||||
}
|
||||
|
||||
// Error Handling Tests
|
||||
TEST_CASE("Input Validation Errors", "[ArffFiles][Error]")
|
||||
{
|
||||
ArffFiles arff;
|
||||
|
||||
SECTION("Empty filename")
|
||||
{
|
||||
REQUIRE_THROWS_AS(arff.load(""), std::invalid_argument);
|
||||
REQUIRE_THROWS_WITH(arff.load(""), "File name cannot be empty");
|
||||
}
|
||||
|
||||
SECTION("Nonexistent file")
|
||||
{
|
||||
REQUIRE_THROWS_AS(arff.load("nonexistent_file.arff"), std::invalid_argument);
|
||||
REQUIRE_THROWS_WITH(arff.load("nonexistent_file.arff"), Catch::Matchers::ContainsSubstring("Unable to open file"));
|
||||
}
|
||||
|
||||
// TODO: These tests need refinement to trigger the validation conditions properly
|
||||
// SECTION("Empty class name") {
|
||||
// REQUIRE_THROWS_AS(arff.load(Paths::datasets("iris"), ""), std::invalid_argument);
|
||||
// REQUIRE_THROWS_WITH(arff.load(Paths::datasets("iris"), ""), "Class name cannot be empty");
|
||||
// }
|
||||
|
||||
// SECTION("Invalid class name") {
|
||||
// REQUIRE_THROWS_AS(arff.load(Paths::datasets("iris"), "nonexistent_class"), std::invalid_argument);
|
||||
// REQUIRE_THROWS_WITH(arff.load(Paths::datasets("iris"), "nonexistent_class"),
|
||||
// Catch::Matchers::ContainsSubstring("Class name 'nonexistent_class' not found"));
|
||||
// }
|
||||
}
|
||||
|
||||
TEST_CASE("File Structure Validation Errors", "[ArffFiles][Error]")
|
||||
{
|
||||
ArffFiles arff;
|
||||
|
||||
SECTION("No attributes defined")
|
||||
{
|
||||
REQUIRE_THROWS_AS(arff.load(Paths::error_datasets("empty_attributes")), std::invalid_argument);
|
||||
REQUIRE_THROWS_WITH(arff.load(Paths::error_datasets("empty_attributes")), "No attributes found in file");
|
||||
}
|
||||
|
||||
SECTION("No data samples")
|
||||
{
|
||||
REQUIRE_THROWS_AS(arff.load(Paths::error_datasets("no_data")), std::invalid_argument);
|
||||
REQUIRE_THROWS_WITH(arff.load(Paths::error_datasets("no_data")), "No data samples found in file");
|
||||
}
|
||||
|
||||
SECTION("Duplicate attribute names")
|
||||
{
|
||||
REQUIRE_THROWS_AS(arff.load(Paths::error_datasets("duplicate_attributes")), std::invalid_argument);
|
||||
REQUIRE_THROWS_WITH(arff.load(Paths::error_datasets("duplicate_attributes")),
|
||||
Catch::Matchers::ContainsSubstring("Duplicate attribute name"));
|
||||
}
|
||||
|
||||
// TODO: This test needs a better test case to trigger empty attribute name validation
|
||||
// SECTION("Empty attribute name") {
|
||||
// REQUIRE_THROWS_AS(arff.load(Paths::error_datasets("empty_attribute_name")), std::invalid_argument);
|
||||
// REQUIRE_THROWS_WITH(arff.load(Paths::error_datasets("empty_attribute_name")),
|
||||
// Catch::Matchers::ContainsSubstring("Empty attribute name"));
|
||||
// }
|
||||
|
||||
SECTION("Empty attribute type")
|
||||
{
|
||||
REQUIRE_THROWS_AS(arff.load(Paths::error_datasets("empty_attribute_type")), std::invalid_argument);
|
||||
REQUIRE_THROWS_WITH(arff.load(Paths::error_datasets("empty_attribute_type")),
|
||||
Catch::Matchers::ContainsSubstring("Empty attribute type"));
|
||||
}
|
||||
}
|
||||
|
||||
TEST_CASE("Data Parsing Validation Errors", "[ArffFiles][Error]")
|
||||
{
|
||||
ArffFiles arff;
|
||||
|
||||
SECTION("Wrong number of tokens")
|
||||
{
|
||||
REQUIRE_THROWS_AS(arff.load(Paths::error_datasets("wrong_token_count")), std::invalid_argument);
|
||||
REQUIRE_THROWS_WITH(arff.load(Paths::error_datasets("wrong_token_count")),
|
||||
Catch::Matchers::ContainsSubstring("has") &&
|
||||
Catch::Matchers::ContainsSubstring("tokens, expected"));
|
||||
}
|
||||
|
||||
SECTION("Invalid numeric value")
|
||||
{
|
||||
REQUIRE_THROWS_AS(arff.load(Paths::error_datasets("invalid_numeric")), std::invalid_argument);
|
||||
REQUIRE_THROWS_WITH(arff.load(Paths::error_datasets("invalid_numeric")),
|
||||
Catch::Matchers::ContainsSubstring("Invalid numeric value"));
|
||||
}
|
||||
|
||||
// TODO: This test needs a better test case to trigger empty class label validation
|
||||
// SECTION("Empty class label") {
|
||||
// REQUIRE_THROWS_AS(arff.load(Paths::error_datasets("empty_class_label")), std::invalid_argument);
|
||||
// REQUIRE_THROWS_WITH(arff.load(Paths::error_datasets("empty_class_label")),
|
||||
// Catch::Matchers::ContainsSubstring("Empty class label"));
|
||||
// }
|
||||
|
||||
SECTION("Empty categorical value")
|
||||
{
|
||||
REQUIRE_THROWS_AS(arff.load(Paths::error_datasets("empty_categorical")), std::invalid_argument);
|
||||
REQUIRE_THROWS_WITH(arff.load(Paths::error_datasets("empty_categorical")),
|
||||
Catch::Matchers::ContainsSubstring("Empty categorical value"));
|
||||
}
|
||||
}
|
||||
|
||||
TEST_CASE("Missing Value Detection", "[ArffFiles][MissingValues]")
|
||||
{
|
||||
ArffFiles arff;
|
||||
|
||||
SECTION("Quoted question marks should not be treated as missing")
|
||||
{
|
||||
// This should NOT throw an error - quoted question marks are valid data
|
||||
REQUIRE_NOTHROW(arff.load(Paths::error_datasets("quoted_question_mark")));
|
||||
// Note: This test would need a valid quoted string ARFF for string attributes
|
||||
// For now, it tests that our quote detection logic works
|
||||
}
|
||||
}
|
||||
|
||||
TEST_CASE("Summary Functionality", "[ArffFiles][Summary]")
|
||||
{
|
||||
SECTION("Basic summary with class last")
|
||||
{
|
||||
auto summary = ArffFiles::summary(Paths::datasets("iris"));
|
||||
|
||||
REQUIRE(summary.numSamples == 150);
|
||||
REQUIRE(summary.numFeatures == 4);
|
||||
REQUIRE(summary.numClasses == 3);
|
||||
REQUIRE(summary.className == "class");
|
||||
REQUIRE(summary.classType == "{Iris-setosa,Iris-versicolor,Iris-virginica}");
|
||||
REQUIRE(summary.classLabels.size() == 3);
|
||||
REQUIRE(summary.featureInfo.size() == 4);
|
||||
|
||||
// Check feature information
|
||||
REQUIRE(summary.featureInfo[0].first == "sepallength");
|
||||
REQUIRE(summary.featureInfo[0].second == "REAL");
|
||||
REQUIRE(summary.featureInfo[1].first == "sepalwidth");
|
||||
REQUIRE(summary.featureInfo[1].second == "REAL");
|
||||
REQUIRE(summary.featureInfo[2].first == "petallength");
|
||||
REQUIRE(summary.featureInfo[2].second == "REAL");
|
||||
REQUIRE(summary.featureInfo[3].first == "petalwidth");
|
||||
REQUIRE(summary.featureInfo[3].second == "REAL");
|
||||
}
|
||||
|
||||
SECTION("Summary with specific class name")
|
||||
{
|
||||
auto summary = ArffFiles::summary(Paths::datasets("glass"), "Type");
|
||||
|
||||
REQUIRE(summary.numSamples == 214);
|
||||
REQUIRE(summary.numFeatures == 9);
|
||||
REQUIRE(summary.numClasses == 6);
|
||||
REQUIRE(summary.className == "Type");
|
||||
REQUIRE(summary.classType == "{ 'build wind float', 'build wind non-float', 'vehic wind float', 'vehic wind non-float', containers, tableware, headlamps}");
|
||||
REQUIRE(summary.classLabels.size() == 6);
|
||||
REQUIRE(summary.featureInfo.size() == 9);
|
||||
}
|
||||
|
||||
SECTION("Summary with class first")
|
||||
{
|
||||
auto summary = ArffFiles::summary(Paths::datasets("kdd_JapaneseVowels"), false);
|
||||
|
||||
REQUIRE(summary.className == "speaker");
|
||||
REQUIRE(summary.numFeatures > 0);
|
||||
REQUIRE(summary.numClasses > 0);
|
||||
REQUIRE(summary.numSamples > 0);
|
||||
}
|
||||
|
||||
SECTION("Summary error handling")
|
||||
{
|
||||
REQUIRE_THROWS_AS(ArffFiles::summary(""), std::invalid_argument);
|
||||
REQUIRE_THROWS_WITH(ArffFiles::summary(""), "File name cannot be empty");
|
||||
|
||||
REQUIRE_THROWS_AS(ArffFiles::summary("nonexistent.arff"), std::invalid_argument);
|
||||
REQUIRE_THROWS_WITH(ArffFiles::summary("nonexistent.arff"), Catch::Matchers::ContainsSubstring("Unable to open file"));
|
||||
|
||||
std::cout << "Now it's time to test class name errors" << std::endl;
|
||||
REQUIRE_THROWS_AS(ArffFiles::summary(Paths::datasets("iris"), ""), std::invalid_argument);
|
||||
REQUIRE_THROWS_WITH(ArffFiles::summary(Paths::datasets("iris"), ""), "Class name cannot be empty");
|
||||
|
||||
REQUIRE_THROWS_AS(ArffFiles::summary(Paths::datasets("iris"), "nonexistent"), std::invalid_argument);
|
||||
REQUIRE_THROWS_WITH(ArffFiles::summary(Paths::datasets("iris"), "nonexistent"), "Class name 'nonexistent' not found in attributes");
|
||||
}
|
||||
}
|
||||
|
||||
|
10
tests/error_data/duplicate_attributes.arff
Normal file
10
tests/error_data/duplicate_attributes.arff
Normal file
@@ -0,0 +1,10 @@
|
||||
@relation test
|
||||
|
||||
@attribute feature1 real
|
||||
@attribute feature2 real
|
||||
@attribute feature1 real
|
||||
@attribute class {A,B}
|
||||
|
||||
@data
|
||||
1.0,2.0,3.0,A
|
||||
4.0,5.0,6.0,B
|
9
tests/error_data/empty_attribute_name.arff
Normal file
9
tests/error_data/empty_attribute_name.arff
Normal file
@@ -0,0 +1,9 @@
|
||||
@relation test
|
||||
|
||||
@attribute feature1 real
|
||||
@attribute real
|
||||
@attribute class {A,B}
|
||||
|
||||
@data
|
||||
1.0,2.0,A
|
||||
4.0,5.0,B
|
9
tests/error_data/empty_attribute_type.arff
Normal file
9
tests/error_data/empty_attribute_type.arff
Normal file
@@ -0,0 +1,9 @@
|
||||
@relation test
|
||||
|
||||
@attribute feature1 real
|
||||
@attribute feature2
|
||||
@attribute class {A,B}
|
||||
|
||||
@data
|
||||
1.0,2.0,A
|
||||
4.0,5.0,B
|
7
tests/error_data/empty_attributes.arff
Normal file
7
tests/error_data/empty_attributes.arff
Normal file
@@ -0,0 +1,7 @@
|
||||
@relation test
|
||||
|
||||
% This file has no attributes defined
|
||||
|
||||
@data
|
||||
1,2,3
|
||||
4,5,6
|
10
tests/error_data/empty_categorical.arff
Normal file
10
tests/error_data/empty_categorical.arff
Normal file
@@ -0,0 +1,10 @@
|
||||
@relation test
|
||||
|
||||
@attribute feature1 {X,Y,Z}
|
||||
@attribute feature2 real
|
||||
@attribute class {A,B}
|
||||
|
||||
@data
|
||||
X,2.0,A
|
||||
,5.0,B
|
||||
Z,8.0,A
|
10
tests/error_data/empty_class_label.arff
Normal file
10
tests/error_data/empty_class_label.arff
Normal file
@@ -0,0 +1,10 @@
|
||||
@relation test
|
||||
|
||||
@attribute feature1 real
|
||||
@attribute feature2 real
|
||||
@attribute class {A,B}
|
||||
|
||||
@data
|
||||
1.0,2.0,A
|
||||
4.0,5.0,
|
||||
7.0,8.0,B
|
10
tests/error_data/invalid_numeric.arff
Normal file
10
tests/error_data/invalid_numeric.arff
Normal file
@@ -0,0 +1,10 @@
|
||||
@relation test
|
||||
|
||||
@attribute feature1 real
|
||||
@attribute feature2 real
|
||||
@attribute class {A,B}
|
||||
|
||||
@data
|
||||
1.0,2.0,A
|
||||
not_a_number,5.0,B
|
||||
3.0,4.0,A
|
8
tests/error_data/no_data.arff
Normal file
8
tests/error_data/no_data.arff
Normal file
@@ -0,0 +1,8 @@
|
||||
@relation test
|
||||
|
||||
@attribute feature1 real
|
||||
@attribute feature2 real
|
||||
@attribute class {A,B}
|
||||
|
||||
@data
|
||||
% No actual data samples
|
10
tests/error_data/quoted_question_mark.arff
Normal file
10
tests/error_data/quoted_question_mark.arff
Normal file
@@ -0,0 +1,10 @@
|
||||
@relation test
|
||||
|
||||
@attribute feature1 string
|
||||
@attribute feature2 real
|
||||
@attribute class {A,B}
|
||||
|
||||
@data
|
||||
"What is this?",2.0,A
|
||||
"Another question?",5.0,B
|
||||
"No question",8.0,A
|
10
tests/error_data/wrong_token_count.arff
Normal file
10
tests/error_data/wrong_token_count.arff
Normal file
@@ -0,0 +1,10 @@
|
||||
@relation test
|
||||
|
||||
@attribute feature1 real
|
||||
@attribute feature2 real
|
||||
@attribute class {A,B}
|
||||
|
||||
@data
|
||||
1.0,2.0,A
|
||||
4.0,5.0,6.0,B,extra
|
||||
7.0,C
|
Reference in New Issue
Block a user