Added summary of ArffFile and tests
This commit is contained in:
285
ArffFiles.hpp
285
ArffFiles.hpp
@@ -4,11 +4,23 @@
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#include <string>
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#include <string>
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#include <vector>
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#include <vector>
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#include <map>
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#include <map>
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#include <set>
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#include <sstream>
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#include <sstream>
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#include <fstream>
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#include <fstream>
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#include <cctype> // std::isdigit
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#include <cctype> // std::isdigit
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#include <algorithm> // std::all_of std::transform
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#include <algorithm> // std::all_of std::transform
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// Summary information structure for ARFF files
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struct ArffSummary {
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size_t numSamples; // Number of data samples
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size_t numFeatures; // Number of feature attributes (excluding class)
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size_t numClasses; // Number of different class values
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std::string className; // Name of the class attribute
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std::string classType; // Type/values of the class attribute
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std::vector<std::string> classLabels; // List of unique class values
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std::vector<std::pair<std::string, std::string>> featureInfo; // Feature names and types
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};
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class ArffFiles {
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class ArffFiles {
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const std::string VERSION = "1.1.0";
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const std::string VERSION = "1.1.0";
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public:
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public:
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@@ -81,6 +93,39 @@ public:
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preprocessDataset(labelIndex);
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preprocessDataset(labelIndex);
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generateDataset(labelIndex);
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generateDataset(labelIndex);
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}
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}
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// Static method to get summary information without loading all data (default: class is last)
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static ArffSummary summary(const std::string& fileName)
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{
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return summary(fileName, true);
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}
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// Static method to get summary information without loading all data
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static ArffSummary summary(const std::string& fileName, bool classLast)
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{
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if (fileName.empty()) {
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throw std::invalid_argument("File name cannot be empty");
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}
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return summarizeFile(fileName, classLast);
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}
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// Static method to get summary information with specified class attribute (const char* overload)
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static ArffSummary summary(const std::string& fileName, const char* className)
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{
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return summary(fileName, std::string(className));
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}
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// Static method to get summary information with specified class attribute
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static ArffSummary summary(const std::string& fileName, const std::string& className)
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{
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if (fileName.empty()) {
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throw std::invalid_argument("File name cannot be empty");
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}
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if (className.empty()) {
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throw std::invalid_argument("Class name cannot be empty");
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}
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return summarizeFile(fileName, className);
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}
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std::vector<std::string> getLines() const { return lines; }
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std::vector<std::string> getLines() const { return lines; }
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unsigned long int getSize() const { return lines.size(); }
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unsigned long int getSize() const { return lines.size(); }
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std::string getClassName() const { return className; }
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std::string getClassName() const { return className; }
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@@ -215,7 +260,8 @@ private:
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// Parse numeric value with exception handling
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// Parse numeric value with exception handling
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try {
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try {
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X[featureIdx][sampleIdx] = std::stof(token);
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X[featureIdx][sampleIdx] = std::stof(token);
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} catch (const std::exception& e) {
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}
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catch (const std::exception& e) {
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throw std::invalid_argument("Invalid numeric value '" + token + "' at sample " + std::to_string(sampleIdx) + ", feature " + featureName);
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throw std::invalid_argument("Invalid numeric value '" + token + "' at sample " + std::to_string(sampleIdx) + ", feature " + featureName);
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}
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}
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} else {
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} else {
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@@ -325,7 +371,8 @@ private:
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}
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}
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// Helper function for better missing value detection
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// Helper function for better missing value detection
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bool containsMissingValue(const std::string& line) {
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bool containsMissingValue(const std::string& line)
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{
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bool inQuotes = false;
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bool inQuotes = false;
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char quoteChar = '\0';
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char quoteChar = '\0';
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@@ -345,6 +392,240 @@ private:
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}
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}
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return false;
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return false;
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}
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}
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// Static version of missing value detection for summary methods
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static bool containsMissingValueStatic(const std::string& line)
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{
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bool inQuotes = false;
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char quoteChar = '\0';
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for (size_t i = 0; i < line.length(); ++i) {
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char c = line[i];
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if (!inQuotes && (c == '\'' || c == '\"')) {
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inQuotes = true;
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quoteChar = c;
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} else if (inQuotes && c == quoteChar) {
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inQuotes = false;
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quoteChar = '\0';
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} else if (!inQuotes && c == '?') {
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// Found unquoted '?' - this is a missing value
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return true;
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}
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}
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return false;
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}
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// Helper function for summary with classLast parameter
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static ArffSummary summarizeFile(const std::string& fileName, bool classLast)
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{
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std::ifstream file(fileName);
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if (!file.is_open()) {
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throw std::invalid_argument("Unable to open file: " + fileName);
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}
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ArffSummary summary;
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std::vector<std::pair<std::string, std::string>> attributes;
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std::set<std::string> uniqueClasses;
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std::string line;
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size_t sampleCount = 0;
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// Parse header
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while (getline(file, line)) {
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if (line.empty() || line[0] == '%' || line == "\r" || line == " ") {
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continue;
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}
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if (line.find("@attribute") != std::string::npos || line.find("@ATTRIBUTE") != std::string::npos) {
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std::stringstream ss(line);
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std::string keyword, attribute, type_w;
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ss >> keyword >> attribute;
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if (attribute.empty()) {
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throw std::invalid_argument("Empty attribute name in line: " + line);
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}
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// Build type string
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std::ostringstream typeStream;
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while (ss >> type_w) {
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if (typeStream.tellp() > 0) typeStream << " ";
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typeStream << type_w;
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}
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std::string type = typeStream.str();
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if (type.empty()) {
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throw std::invalid_argument("Empty attribute type for attribute: " + attribute);
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}
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attributes.emplace_back(trim(attribute), trim(type));
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continue;
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}
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if (line[0] == '@') {
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continue;
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}
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// Start of data section
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break;
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}
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if (attributes.empty()) {
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throw std::invalid_argument("No attributes found in file");
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}
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// Determine class attribute
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if (classLast) {
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summary.className = attributes.back().first;
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summary.classType = attributes.back().second;
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attributes.pop_back();
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} else {
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summary.className = attributes.front().first;
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summary.classType = attributes.front().second;
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attributes.erase(attributes.begin());
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}
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summary.numFeatures = attributes.size();
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// Copy feature information
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for (const auto& attr : attributes) {
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summary.featureInfo.emplace_back(attr.first, attr.second);
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}
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// Count samples and collect unique class values
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do {
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if (!line.empty() && line[0] != '@' && line[0] != '%' && !containsMissingValueStatic(line)) {
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auto tokens = splitStatic(line, ',');
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if (!tokens.empty()) {
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std::string classValue;
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if (classLast) {
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classValue = trim(tokens.back());
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} else {
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classValue = trim(tokens.front());
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}
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if (!classValue.empty()) {
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uniqueClasses.insert(classValue);
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sampleCount++;
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}
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}
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}
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}
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while (getline(file, line));
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file.close();
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summary.numSamples = sampleCount;
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summary.numClasses = uniqueClasses.size();
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summary.classLabels.assign(uniqueClasses.begin(), uniqueClasses.end());
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return summary;
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}
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// Helper function for summary with className parameter
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static ArffSummary summarizeFile(const std::string& fileName, const std::string& className)
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{
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std::ifstream file(fileName);
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if (!file.is_open()) {
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throw std::invalid_argument("Unable to open file: " + fileName);
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}
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ArffSummary summary;
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std::vector<std::pair<std::string, std::string>> attributes;
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std::set<std::string> uniqueClasses;
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std::string line;
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size_t sampleCount = 0;
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int classIndex = -1;
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// Parse header
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while (getline(file, line)) {
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if (line.empty() || line[0] == '%' || line == "\r" || line == " ") {
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continue;
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}
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if (line.find("@attribute") != std::string::npos || line.find("@ATTRIBUTE") != std::string::npos) {
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std::stringstream ss(line);
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std::string keyword, attribute, type_w;
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ss >> keyword >> attribute;
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if (attribute.empty()) {
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throw std::invalid_argument("Empty attribute name in line: " + line);
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}
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// Build type string
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std::ostringstream typeStream;
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while (ss >> type_w) {
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if (typeStream.tellp() > 0) typeStream << " ";
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typeStream << type_w;
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}
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std::string type = typeStream.str();
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if (type.empty()) {
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throw std::invalid_argument("Empty attribute type for attribute: " + attribute);
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}
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attributes.emplace_back(trim(attribute), trim(type));
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if (trim(attribute) == className) {
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classIndex = attributes.size() - 1;
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summary.className = trim(attribute);
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summary.classType = trim(type);
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}
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continue;
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}
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if (line[0] == '@') {
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continue;
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}
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// Start of data section
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break;
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}
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if (attributes.empty()) {
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throw std::invalid_argument("No attributes found in file");
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}
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if (classIndex == -1) {
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throw std::invalid_argument("Class name '" + className + "' not found in attributes");
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}
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// Remove class attribute from features
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attributes.erase(attributes.begin() + classIndex);
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summary.numFeatures = attributes.size();
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// Copy feature information
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for (const auto& attr : attributes) {
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summary.featureInfo.emplace_back(attr.first, attr.second);
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}
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// Count samples and collect unique class values
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do {
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if (!line.empty() && line[0] != '@' && line[0] != '%' && !containsMissingValueStatic(line)) {
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auto tokens = splitStatic(line, ',');
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if (tokens.size() > static_cast<size_t>(classIndex)) {
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std::string classValue = trim(tokens[classIndex]);
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if (!classValue.empty()) {
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uniqueClasses.insert(classValue);
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sampleCount++;
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}
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}
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}
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}
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while (getline(file, line));
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file.close();
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summary.numSamples = sampleCount;
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summary.numClasses = uniqueClasses.size();
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summary.classLabels.assign(uniqueClasses.begin(), uniqueClasses.end());
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return summary;
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}
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// Static helper function for split (needed by summarizeFile)
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static std::vector<std::string> splitStatic(const std::string& text, char delimiter)
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{
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std::vector<std::string> result;
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std::stringstream ss(text);
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std::string token;
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while (std::getline(ss, token, delimiter)) {
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result.push_back(trim(token));
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}
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return result;
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}
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};
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};
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#endif
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#endif
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@@ -11,6 +11,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
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- Claude TECHNICAL_REPORT.md for detailed analysis
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- Claude TECHNICAL_REPORT.md for detailed analysis
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- Claude CLAUDE.md for AI engine usage
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- Claude CLAUDE.md for AI engine usage
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- Method summary that returns the number of features, samples, and classes without loading the data
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### Internal
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### Internal
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@@ -163,12 +163,14 @@ TEST_CASE("Input Validation Errors", "[ArffFiles][Error]")
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{
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{
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ArffFiles arff;
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ArffFiles arff;
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SECTION("Empty filename") {
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SECTION("Empty filename")
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{
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REQUIRE_THROWS_AS(arff.load(""), std::invalid_argument);
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REQUIRE_THROWS_AS(arff.load(""), std::invalid_argument);
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REQUIRE_THROWS_WITH(arff.load(""), "File name cannot be empty");
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REQUIRE_THROWS_WITH(arff.load(""), "File name cannot be empty");
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}
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}
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SECTION("Nonexistent file") {
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SECTION("Nonexistent file")
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{
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REQUIRE_THROWS_AS(arff.load("nonexistent_file.arff"), std::invalid_argument);
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REQUIRE_THROWS_AS(arff.load("nonexistent_file.arff"), std::invalid_argument);
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REQUIRE_THROWS_WITH(arff.load("nonexistent_file.arff"), Catch::Matchers::ContainsSubstring("Unable to open file"));
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REQUIRE_THROWS_WITH(arff.load("nonexistent_file.arff"), Catch::Matchers::ContainsSubstring("Unable to open file"));
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}
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}
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@@ -190,20 +192,23 @@ TEST_CASE("File Structure Validation Errors", "[ArffFiles][Error]")
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{
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{
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ArffFiles arff;
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ArffFiles arff;
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SECTION("No attributes defined") {
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SECTION("No attributes defined")
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{
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REQUIRE_THROWS_AS(arff.load(Paths::error_datasets("empty_attributes")), std::invalid_argument);
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REQUIRE_THROWS_AS(arff.load(Paths::error_datasets("empty_attributes")), std::invalid_argument);
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REQUIRE_THROWS_WITH(arff.load(Paths::error_datasets("empty_attributes")), "No attributes found in file");
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REQUIRE_THROWS_WITH(arff.load(Paths::error_datasets("empty_attributes")), "No attributes found in file");
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}
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}
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SECTION("No data samples") {
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SECTION("No data samples")
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{
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REQUIRE_THROWS_AS(arff.load(Paths::error_datasets("no_data")), std::invalid_argument);
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REQUIRE_THROWS_AS(arff.load(Paths::error_datasets("no_data")), std::invalid_argument);
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REQUIRE_THROWS_WITH(arff.load(Paths::error_datasets("no_data")), "No data samples found in file");
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REQUIRE_THROWS_WITH(arff.load(Paths::error_datasets("no_data")), "No data samples found in file");
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}
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}
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SECTION("Duplicate attribute names") {
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SECTION("Duplicate attribute names")
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{
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REQUIRE_THROWS_AS(arff.load(Paths::error_datasets("duplicate_attributes")), std::invalid_argument);
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REQUIRE_THROWS_AS(arff.load(Paths::error_datasets("duplicate_attributes")), std::invalid_argument);
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REQUIRE_THROWS_WITH(arff.load(Paths::error_datasets("duplicate_attributes")),
|
REQUIRE_THROWS_WITH(arff.load(Paths::error_datasets("duplicate_attributes")),
|
||||||
Catch::Matchers::ContainsSubstring("Duplicate attribute name"));
|
Catch::Matchers::ContainsSubstring("Duplicate attribute name"));
|
||||||
}
|
}
|
||||||
|
|
||||||
// TODO: This test needs a better test case to trigger empty attribute name validation
|
// TODO: This test needs a better test case to trigger empty attribute name validation
|
||||||
@@ -213,10 +218,11 @@ TEST_CASE("File Structure Validation Errors", "[ArffFiles][Error]")
|
|||||||
// Catch::Matchers::ContainsSubstring("Empty attribute name"));
|
// Catch::Matchers::ContainsSubstring("Empty attribute name"));
|
||||||
// }
|
// }
|
||||||
|
|
||||||
SECTION("Empty attribute type") {
|
SECTION("Empty attribute type")
|
||||||
|
{
|
||||||
REQUIRE_THROWS_AS(arff.load(Paths::error_datasets("empty_attribute_type")), std::invalid_argument);
|
REQUIRE_THROWS_AS(arff.load(Paths::error_datasets("empty_attribute_type")), std::invalid_argument);
|
||||||
REQUIRE_THROWS_WITH(arff.load(Paths::error_datasets("empty_attribute_type")),
|
REQUIRE_THROWS_WITH(arff.load(Paths::error_datasets("empty_attribute_type")),
|
||||||
Catch::Matchers::ContainsSubstring("Empty attribute type"));
|
Catch::Matchers::ContainsSubstring("Empty attribute type"));
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
@@ -224,17 +230,19 @@ TEST_CASE("Data Parsing Validation Errors", "[ArffFiles][Error]")
|
|||||||
{
|
{
|
||||||
ArffFiles arff;
|
ArffFiles arff;
|
||||||
|
|
||||||
SECTION("Wrong number of tokens") {
|
SECTION("Wrong number of tokens")
|
||||||
|
{
|
||||||
REQUIRE_THROWS_AS(arff.load(Paths::error_datasets("wrong_token_count")), std::invalid_argument);
|
REQUIRE_THROWS_AS(arff.load(Paths::error_datasets("wrong_token_count")), std::invalid_argument);
|
||||||
REQUIRE_THROWS_WITH(arff.load(Paths::error_datasets("wrong_token_count")),
|
REQUIRE_THROWS_WITH(arff.load(Paths::error_datasets("wrong_token_count")),
|
||||||
Catch::Matchers::ContainsSubstring("has") &&
|
Catch::Matchers::ContainsSubstring("has") &&
|
||||||
Catch::Matchers::ContainsSubstring("tokens, expected"));
|
Catch::Matchers::ContainsSubstring("tokens, expected"));
|
||||||
}
|
}
|
||||||
|
|
||||||
SECTION("Invalid numeric value") {
|
SECTION("Invalid numeric value")
|
||||||
|
{
|
||||||
REQUIRE_THROWS_AS(arff.load(Paths::error_datasets("invalid_numeric")), std::invalid_argument);
|
REQUIRE_THROWS_AS(arff.load(Paths::error_datasets("invalid_numeric")), std::invalid_argument);
|
||||||
REQUIRE_THROWS_WITH(arff.load(Paths::error_datasets("invalid_numeric")),
|
REQUIRE_THROWS_WITH(arff.load(Paths::error_datasets("invalid_numeric")),
|
||||||
Catch::Matchers::ContainsSubstring("Invalid numeric value"));
|
Catch::Matchers::ContainsSubstring("Invalid numeric value"));
|
||||||
}
|
}
|
||||||
|
|
||||||
// TODO: This test needs a better test case to trigger empty class label validation
|
// TODO: This test needs a better test case to trigger empty class label validation
|
||||||
@@ -244,10 +252,11 @@ TEST_CASE("Data Parsing Validation Errors", "[ArffFiles][Error]")
|
|||||||
// Catch::Matchers::ContainsSubstring("Empty class label"));
|
// Catch::Matchers::ContainsSubstring("Empty class label"));
|
||||||
// }
|
// }
|
||||||
|
|
||||||
SECTION("Empty categorical value") {
|
SECTION("Empty categorical value")
|
||||||
|
{
|
||||||
REQUIRE_THROWS_AS(arff.load(Paths::error_datasets("empty_categorical")), std::invalid_argument);
|
REQUIRE_THROWS_AS(arff.load(Paths::error_datasets("empty_categorical")), std::invalid_argument);
|
||||||
REQUIRE_THROWS_WITH(arff.load(Paths::error_datasets("empty_categorical")),
|
REQUIRE_THROWS_WITH(arff.load(Paths::error_datasets("empty_categorical")),
|
||||||
Catch::Matchers::ContainsSubstring("Empty categorical value"));
|
Catch::Matchers::ContainsSubstring("Empty categorical value"));
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
@@ -255,7 +264,8 @@ TEST_CASE("Missing Value Detection", "[ArffFiles][MissingValues]")
|
|||||||
{
|
{
|
||||||
ArffFiles arff;
|
ArffFiles arff;
|
||||||
|
|
||||||
SECTION("Quoted question marks should not be treated as missing") {
|
SECTION("Quoted question marks should not be treated as missing")
|
||||||
|
{
|
||||||
// This should NOT throw an error - quoted question marks are valid data
|
// This should NOT throw an error - quoted question marks are valid data
|
||||||
REQUIRE_NOTHROW(arff.load(Paths::error_datasets("quoted_question_mark")));
|
REQUIRE_NOTHROW(arff.load(Paths::error_datasets("quoted_question_mark")));
|
||||||
// Note: This test would need a valid quoted string ARFF for string attributes
|
// Note: This test would need a valid quoted string ARFF for string attributes
|
||||||
@@ -263,3 +273,68 @@ TEST_CASE("Missing Value Detection", "[ArffFiles][MissingValues]")
|
|||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
|
TEST_CASE("Summary Functionality", "[ArffFiles][Summary]")
|
||||||
|
{
|
||||||
|
SECTION("Basic summary with class last")
|
||||||
|
{
|
||||||
|
auto summary = ArffFiles::summary(Paths::datasets("iris"));
|
||||||
|
|
||||||
|
REQUIRE(summary.numSamples == 150);
|
||||||
|
REQUIRE(summary.numFeatures == 4);
|
||||||
|
REQUIRE(summary.numClasses == 3);
|
||||||
|
REQUIRE(summary.className == "class");
|
||||||
|
REQUIRE(summary.classType == "{Iris-setosa,Iris-versicolor,Iris-virginica}");
|
||||||
|
REQUIRE(summary.classLabels.size() == 3);
|
||||||
|
REQUIRE(summary.featureInfo.size() == 4);
|
||||||
|
|
||||||
|
// Check feature information
|
||||||
|
REQUIRE(summary.featureInfo[0].first == "sepallength");
|
||||||
|
REQUIRE(summary.featureInfo[0].second == "REAL");
|
||||||
|
REQUIRE(summary.featureInfo[1].first == "sepalwidth");
|
||||||
|
REQUIRE(summary.featureInfo[1].second == "REAL");
|
||||||
|
REQUIRE(summary.featureInfo[2].first == "petallength");
|
||||||
|
REQUIRE(summary.featureInfo[2].second == "REAL");
|
||||||
|
REQUIRE(summary.featureInfo[3].first == "petalwidth");
|
||||||
|
REQUIRE(summary.featureInfo[3].second == "REAL");
|
||||||
|
}
|
||||||
|
|
||||||
|
SECTION("Summary with specific class name")
|
||||||
|
{
|
||||||
|
auto summary = ArffFiles::summary(Paths::datasets("glass"), "Type");
|
||||||
|
|
||||||
|
REQUIRE(summary.numSamples == 214);
|
||||||
|
REQUIRE(summary.numFeatures == 9);
|
||||||
|
REQUIRE(summary.numClasses == 6);
|
||||||
|
REQUIRE(summary.className == "Type");
|
||||||
|
REQUIRE(summary.classType == "{ 'build wind float', 'build wind non-float', 'vehic wind float', 'vehic wind non-float', containers, tableware, headlamps}");
|
||||||
|
REQUIRE(summary.classLabels.size() == 6);
|
||||||
|
REQUIRE(summary.featureInfo.size() == 9);
|
||||||
|
}
|
||||||
|
|
||||||
|
SECTION("Summary with class first")
|
||||||
|
{
|
||||||
|
auto summary = ArffFiles::summary(Paths::datasets("kdd_JapaneseVowels"), false);
|
||||||
|
|
||||||
|
REQUIRE(summary.className == "speaker");
|
||||||
|
REQUIRE(summary.numFeatures > 0);
|
||||||
|
REQUIRE(summary.numClasses > 0);
|
||||||
|
REQUIRE(summary.numSamples > 0);
|
||||||
|
}
|
||||||
|
|
||||||
|
SECTION("Summary error handling")
|
||||||
|
{
|
||||||
|
REQUIRE_THROWS_AS(ArffFiles::summary(""), std::invalid_argument);
|
||||||
|
REQUIRE_THROWS_WITH(ArffFiles::summary(""), "File name cannot be empty");
|
||||||
|
|
||||||
|
REQUIRE_THROWS_AS(ArffFiles::summary("nonexistent.arff"), std::invalid_argument);
|
||||||
|
REQUIRE_THROWS_WITH(ArffFiles::summary("nonexistent.arff"), Catch::Matchers::ContainsSubstring("Unable to open file"));
|
||||||
|
|
||||||
|
std::cout << "Now it's time to test class name errors" << std::endl;
|
||||||
|
REQUIRE_THROWS_AS(ArffFiles::summary(Paths::datasets("iris"), ""), std::invalid_argument);
|
||||||
|
REQUIRE_THROWS_WITH(ArffFiles::summary(Paths::datasets("iris"), ""), "Class name cannot be empty");
|
||||||
|
|
||||||
|
REQUIRE_THROWS_AS(ArffFiles::summary(Paths::datasets("iris"), "nonexistent"), std::invalid_argument);
|
||||||
|
REQUIRE_THROWS_WITH(ArffFiles::summary(Paths::datasets("iris"), "nonexistent"), "Class name 'nonexistent' not found in attributes");
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
Reference in New Issue
Block a user