update slurm template and tunnel/mysql config

scripts/experiment.slurm

@@ -1,13 +1,11 @@
 #!/bin/bash
 
-#SBATCH --time=96:00:00   # walltime
+#SBATCH --partition=qdata
 #SBATCH --ntasks=4   # number of processor cores (i.e. tasks)
 #SBATCH --nodes=1   # number of nodes
-#SBATCH --mem-per-cpu=4096M   # memory per CPU core
 #SBATCH -J "<experiment>-<data>-<model>-<kernel>"   # job name
 #SBATCH --mail-user=ricardo.montanana@alu.uclm.es   # email address
-#SBATCH --mail-type=END
-#SBATCH --mail-type=FAIL
+#SBATCH --mail-type=END,FAIL
 
 # LOAD MODULES, INSERT CODE, AND RUN YOUR PROGRAMS HERE
 cd <folder>

scripts/launchsome.sh

@@ -1,10 +1,11 @@
 #!/bin/bash
-if [ "$1" = "" -o "$2" = "" -o "$3" = "" -o "$4" = "" ] ; then
+if [ "$1" = "" -o "$2" = "" -o "$3" = "" -o "$4" = "" -o "$5" = "" ] ; then
 	echo "Hay que seleccionar:"
     echo " - el tipo de experimento {gridsearch, gridbest, cross}"
     echo " - el modelo {stree, adaBoost, bagging, odte}"
     echo " - el kernel {linear, poly, rbf, any}"
 	echo " - el archivo con nombres de datasets"
+	echo " - el tipo de plataforma {pbs, slurm}"
 	echo "opcionalmente al final: dry-run"
 	exit 1
 fi
@@ -20,16 +21,25 @@ if [[ ! "linearpolyrbfany"  == *$3* ]] ; then
 	echo "Hay que seleccionar el kernel {linear, poly, rbf, any}"
 	exit 1
 fi
+if [[ ! "pbsslurm"  == *$4* ]] ; then
+	echo "Hay que especificar la plataforma {pbs, slurm}"
+	exit 1
+fi
+if [ $4 = "pbs" ] ; then
+	launcher="qsub"
+else
+	launcher="sbatch"
+fi
 script_path="$(pwd)"
 cd $1/$2/$3
 counter=0
-lines="$(cat $script_path/$4|cut -d " " -f 2|tail -49)"
+lines="$(cat $script_path/$5|cut -d " " -f 2|tail -49)"
 for a in $lines; do
 	echo "launch experiment_$a.sh"
 	if [ "$5" = "dry-run" ] ; then
 		echo "not launched"
 	else
-		qsub experiment_$a.sh
+		$launcher experiment_$a.sh
 	fi
 	let counter++
 done