From 8c4a5ebae553fd045a0fd88b20ed5ea7cba7a302 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Ricardo=20Montan=CC=83ana?= <rmontanana@gmail.com>
Date: Wed, 11 May 2022 18:14:37 +0200
Subject: [PATCH] Remove codeql and add R env

---
 .github/workflows/codeql-analysis.yml | 56 ---------------------------
 .github/workflows/main.yml            |  9 +++++
 README.md                             |  1 -
 3 files changed, 9 insertions(+), 57 deletions(-)
 delete mode 100644 .github/workflows/codeql-analysis.yml

diff --git a/.github/workflows/codeql-analysis.yml b/.github/workflows/codeql-analysis.yml
deleted file mode 100644
index 9ba4cf6..0000000
--- a/.github/workflows/codeql-analysis.yml
+++ /dev/null
@@ -1,56 +0,0 @@
-name: "CodeQL"
-
-on:
-  push:
-    branches: [main]
-  pull_request:
-    # The branches below must be a subset of the branches above
-    branches: [main]
-  schedule:
-    - cron: "16 17 * * 5"
-
-jobs:
-  analyze:
-    name: Analyze
-    runs-on: ubuntu-latest
-
-    strategy:
-      fail-fast: false
-      matrix:
-        language: ["python"]
-        # CodeQL supports [ 'cpp', 'csharp', 'go', 'java', 'javascript', 'python' ]
-        # Learn more:
-        # https://docs.github.com/en/free-pro-team@latest/github/finding-security-vulnerabilities-and-errors-in-your-code/configuring-code-scanning#changing-the-languages-that-are-analyzed
-
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v2
-
-      # Initializes the CodeQL tools for scanning.
-      - name: Initialize CodeQL
-        uses: github/codeql-action/init@v1
-        with:
-          languages: ${{ matrix.language }}
-          # If you wish to specify custom queries, you can do so here or in a config file.
-          # By default, queries listed here will override any specified in a config file.
-          # Prefix the list here with "+" to use these queries and those in the config file.
-          # queries: ./path/to/local/query, your-org/your-repo/queries@main
-
-      # Autobuild attempts to build any compiled languages  (C/C++, C#, or Java).
-      # If this step fails, then you should remove it and run the build manually (see below)
-      - name: Autobuild
-        uses: github/codeql-action/autobuild@v1
-
-      # ℹ️ Command-line programs to run using the OS shell.
-      # 📚 https://git.io/JvXDl
-
-      # ✏️ If the Autobuild fails above, remove it and uncomment the following three lines
-      #    and modify them (or add more) to build your code if your project
-      #    uses a compiled language
-
-      #- run: |
-      #   make bootstrap
-      #   make release
-
-      - name: Perform CodeQL Analysis
-        uses: github/codeql-action/analyze@v1
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index a2da778..d8dc59d 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -17,6 +17,15 @@ jobs:
 
     steps:
       - uses: actions/checkout@v2
+      # Make dot command available in the environment
+      - name: Setup Graphviz
+        uses: ts-graphviz/setup-graphviz@v1
+      - uses: r-lib/actions/setup-r@v2
+      - name: Install R dependencies
+        run: |
+          install.packages('devtools')
+          devtools::install_github("jacintoarias/exreport")
+        shell: Rscript {0}
       - name: Set up Python ${{ matrix.python }}
         uses: actions/setup-python@v2
         with:
diff --git a/README.md b/README.md
index 39c6d8b..a9ae800 100644
--- a/README.md
+++ b/README.md
@@ -1,5 +1,4 @@
 [![CI](https://github.com/Doctorado-ML/benchmark/actions/workflows/main.yml/badge.svg)](https://github.com/Doctorado-ML/benchmark/actions/workflows/main.yml)
-[![CodeQL](https://github.com/Doctorado-ML/benchmark/actions/workflows/codeql-analysis.yml/badge.svg)](https://github.com/Doctorado-ML/benchmark/actions/workflows/codeql-analysis.yml)
 [![codecov](https://codecov.io/gh/doctorado-ml/benchmark/branch/master/graph/badge.svg)](https://codecov.io/gh/doctorado-ml/benchmark)
 ![https://img.shields.io/badge/python-3.8%2B-blue](https://img.shields.io/badge/python-3.8%2B-brightgreen)
 # benchmark