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Change scripts model of setup

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Ricardo Montañana Gómez
2022-05-04 19:39:25 +02:00
parent e9d44e928b
commit 791991c929
39 changed files with 737 additions and 993 deletions
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9
.coveragerc
View File

@@ -1,15 +1,10 @@
[run]
branch = True
source = benchmark
[report]
exclude_lines =
if self.debug:
pragma: no cover
raise NotImplementedError
if __name__ == .__main__.:
ignore_errors = True
omit =
benchmark/__init__.py
benchmark/scripts/__init__.py
benchmark/_version.py
benchmark/tests/*

271
benchmark/Arguments.py
View File

@@ -11,3 +11,274 @@ ALL_METRICS = (
)
class EnvData:
@staticmethod
def load():
args = {}
with open(Files.dot_env) as f:
for line in f.read().splitlines():
if line == "" or line.startswith("#"):
continue
key, value = line.split("=")
args[key] = value
return args
class EnvDefault(argparse.Action):
# Thanks to https://stackoverflow.com/users/445507/russell-heilling
def __init__(self, envvar, required=True, default=None, **kwargs):
self._args = EnvData.load()
default = self._args[envvar]
required = False
super(EnvDefault, self).__init__(
default=default, required=required, **kwargs
)
def __call__(self, parser, namespace, values, option_string=None):
setattr(namespace, self.dest, values)
class Arguments:
def __init__(self):
self.ap = argparse.ArgumentParser()
models_data = Models.define_models(random_state=0)
self.parameters = {
"best": [
("-b", "--best"),
{
"type": str,
"required": False,
"help": "best results of models",
},
],
"color": [
("-c", "--color"),
{
"type": bool,
"required": False,
"default": False,
"help": "use colors for the tree",
},
],
"compare": [
("-c", "--compare"),
{
"type": bool,
"required": False,
"help": "Compare accuracy with best results",
},
],
"dataset": [
("-d", "--dataset"),
{
"type": str,
"required": False,
"help": "dataset to work with",
},
],
"excel": [
("-x", "--excel"),
{
"type": bool,
"required": False,
"default": False,
"help": "Generate Excel File",
},
],
"file": [
("-f", "--file"),
{"type": str, "required": False, "help": "Result file"},
],
"grid": [
("-g", "--grid"),
{
"type": str,
"required": False,
"help": "grid results of model",
},
],
"grid_paramfile": [
("-g", "--grid_paramfile"),
{
"type": bool,
"required": False,
"default": False,
"help": "Use best hyperparams file?",
},
],
"hidden": [
("--hidden",),
{
"type": str,
"required": False,
"default": False,
"help": "Show hidden results",
},
],
"hyperparameters": [
("-p", "--hyperparameters"),
{"type": str, "required": False, "default": "{}"},
],
"key": [
("-k", "--key"),
{
"type": str,
"required": False,
"default": "date",
"help": "key to sort results",
},
],
"lose": [
("-l", "--lose"),
{
"type": bool,
"default": False,
"required": False,
"help": "show lose results",
},
],
"model": [
("-m", "--model"),
{
"type": str,
"required": True,
"choices": list(models_data),
"action": EnvDefault,
"envvar": "model",
"help": "model name",
},
],
"model1": [
("-m1", "--model1"),
{
"type": str,
"required": True,
"choices": list(models_data),
"action": EnvDefault,
"envvar": "model",
"help": "model name",
},
],
"model2": [
("-m2", "--model2"),
{
"type": str,
"required": True,
"choices": list(models_data),
"action": EnvDefault,
"envvar": "model",
"help": "model name",
},
],
"nan": [
("--nan",),
{
"type": bool,
"required": False,
"help": "Move nan results to hidden folder",
},
],
"number": [
("-n", "--number"),
{
"type": int,
"required": False,
"default": 0,
"help": "number of results to show, 0 to any",
},
],
"n_folds": [
("-n", "--n_folds"),
{
"action": EnvDefault,
"envvar": "n_folds",
"type": int,
"required": True,
"help": "number of folds",
},
],
"paramfile": [
("-f", "--paramfile"),
{
"type": bool,
"required": False,
"default": False,
"help": "Use best hyperparams file?",
},
],
"platform": [],
"quiet": [
("-q", "--quiet"),
{
"type": bool,
"required": False,
"default": False,
},
],
"report": [
("-r", "--report"),
{
"type": bool,
"default": False,
"required": False,
"help": "Report results",
},
],
"score": [
("-s", "--score"),
{
"action": EnvDefault,
"envvar": "score",
"type": str,
"required": True,
"choices": ALL_METRICS,
},
],
"sql": [
("-q", "--sql"),
{"type": bool, "required": False, "help": "Generate SQL File"},
],
"stratified": [
("-t", "--stratified"),
{
"action": EnvDefault,
"envvar": "stratified",
"type": str,
"required": True,
"help": "Stratified",
},
],
"tex_output": [
("-t", "--tex-output"),
{
"type": bool,
"required": False,
"default": False,
"help": "Generate Tex file with the table",
},
],
"title": [
("--title",),
{"type": str, "required": True, "help": "experiment title"},
],
"win": [
("-w", "--win"),
{
"type": bool,
"default": False,
"required": False,
"help": "show win results",
},
],
}
def xset(self, *arg_name, **kwargs):
names, default = self.parameters[arg_name[0]]
self.ap.add_argument(
*names,
**{**default, **kwargs},
)
return self
def parse(self):
return self.ap.parse_args()

3
benchmark/Experiments.py
View File

@@ -14,7 +14,8 @@ from sklearn.model_selection import (
cross_validate,
)
from .Utils import Folders, Files
from .Models import Models, EnvData
from .Models import Models
from .Arguments import EnvData
class Randomized:

146
benchmark/Models.py
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@@ -1,4 +1,3 @@
import argparse
from statistics import mean
from sklearn.tree import DecisionTreeClassifier, ExtraTreeClassifier
from sklearn.ensemble import (
@@ -12,15 +11,6 @@ from stree import Stree
from wodt import Wodt
from odte import Odte
from xgboost import XGBClassifier
from .Utils import Files
ALL_METRICS = (
"accuracy",
"f1-macro",
"f1-micro",
"f1-weighted",
"roc-auc-ovr",
)
class Models:
@@ -99,139 +89,3 @@ class Models:
nodes, leaves = result.nodes_leaves()
depth = result.depth_ if hasattr(result, "depth_") else 0
return nodes, leaves, depth
class EnvData:
@staticmethod
def load():
args = {}
with open(Files.dot_env) as f:
for line in f.read().splitlines():
if line == "" or line.startswith("#"):
continue
key, value = line.split("=")
args[key] = value
return args
class EnvDefault(argparse.Action):
# Thanks to https://stackoverflow.com/users/445507/russell-heilling
def __init__(self, envvar, required=True, default=None, **kwargs):
self._args = EnvData.load()
default = self._args[envvar]
required = False
super(EnvDefault, self).__init__(
default=default, required=required, **kwargs
)
def __call__(self, parser, namespace, values, option_string=None):
setattr(namespace, self.dest, values)
class Arguments:
def __init__(self):
self.ap = argparse.ArgumentParser()
models_data = Models.define_models(random_state=0)
self.parameters = {
"best": [
("-b", "--best"),
{
"type": str,
"required": False,
"help": "best results of models",
},
],
"color": [],
"compare": [
("-c", "--compare"),
{
"type": bool,
"required": False,
"help": "Compare accuracy with best results",
},
],
"dataset": [],
"excel": [
("-x", "--excel"),
{
"type": bool,
"required": False,
"default": False,
"help": "Generate Excel File",
},
],
"file": [
("-f", "--file"),
{"type": str, "required": False, "help": "Result file"},
],
"grid": [
("-g", "--grid"),
{
"type": str,
"required": False,
"help": "grid results of model",
},
],
"grid_paramfile": [],
"hidden": [],
"hyperparameters": [],
"key": [],
"lose": [],
"model": [
("-m", "--model"),
{
"type": str,
"required": True,
"choices": list(models_data),
"action": EnvDefault,
"envvar": "model",
"help": f"model name",
},
],
"model1": [],
"model2": [],
"nan": [],
"number": [],
"n_folds": [],
"paramfile": [],
"platform": [],
"quiet": [],
"report": [],
"score": [
("-s", "--score"),
{
"action": EnvDefault,
"envvar": "score",
"type": str,
"required": True,
"choices": ALL_METRICS,
},
],
"sql": [
("-q", "--sql"),
{"type": bool, "required": False, "help": "Generate SQL File"},
],
"stratified": [],
"tex_output": [
("-t", "--tex-output"),
{
"type": bool,
"required": False,
"default": False,
"help": "Generate Tex file with the table",
},
],
"title": [],
"win": [],
}
def xset(self, *arg_name, **kwargs):
names, default = self.parameters[arg_name[0]]
self.ap.add_argument(
*names,
**{**default, **kwargs},
)
return self
def parse(self):
return self.ap.parse_args()

2
benchmark/__init__.py
View File

@@ -1,6 +1,6 @@
from .Experiments import Experiment, Datasets, DatasetsSurcov, DatasetsTanveer
from .Results import Report, Summary
from .Models import EnvDefault
from .Arguments import EnvDefault
__author__ = "Ricardo Montañana Gómez"
__copyright__ = "Copyright 2020-2022, Ricardo Montañana Gómez"

0
benchmark/scripts/__init__.py Normal file
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19
benchmark/scripts/be_benchmark
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@@ -1,19 +0,0 @@
#!/usr/bin/env python
from benchmark.Results import Benchmark
from benchmark.Utils import Files
from benchmark.Models import Arguments
arguments = Arguments()
arguments.xset("score").xset("excel").xset("tex_output")
ar = arguments.parse()
benchmark = Benchmark(score=ar.score, visualize=True)
benchmark.compile_results()
benchmark.save_results()
benchmark.report(ar.tex_output)
benchmark.exreport()
if ar.excel:
benchmark.excel()
Files.open(benchmark.get_excel_file_name())
if ar.tex_output:
print(f"File {benchmark.get_tex_file()} generated")

20
benchmark/scripts/be_benchmark.py Executable file
View File

@@ -0,0 +1,20 @@
#!/usr/bin/env python
from benchmark.Results import Benchmark
from benchmark.Utils import Files
from benchmark.Arguments import Arguments
def main():
arguments = Arguments()
arguments.xset("score").xset("excel").xset("tex_output")
ar = arguments.parse()
benchmark = Benchmark(score=ar.score, visualize=True)
benchmark.compile_results()
benchmark.save_results()
benchmark.report(ar.tex_output)
benchmark.exreport()
if ar.excel:
benchmark.excel()
Files.open(benchmark.get_excel_file_name())
if ar.tex_output:
print(f"File {benchmark.get_tex_file()} generated")

30
benchmark/scripts/be_best
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@@ -1,30 +0,0 @@
#!/usr/bin/env python
import json
from benchmark.Results import Summary
from benchmark.Utils import ALL_METRICS, Arguments
arguments = Arguments()
metrics = list(ALL_METRICS)
metrics.append("all")
arguments.xset("score", choices=metrics)
args = arguments.parse()
metrics = ALL_METRICS if args.score == "all" else [args.score]
summary = Summary()
summary.acquire()
nl = 50
num = 100
for metric in metrics:
title = f"BEST RESULTS of {metric} for datasets"
best = summary.best_results_datasets(score=metric)
for key, item in best.items():
print(f"{key:30s} {item[2]:{nl}s}")
print("-" * num)
print(f"{item[0]:30.7f} {json.dumps(item[1]):{nl}s}")
print("-" * num)
print(f"{item[3]:{nl+num}s}")
print("*" * num)

26
benchmark/scripts/be_best.py Executable file
View File

@@ -0,0 +1,26 @@
#!/usr/bin/env python
import json
from benchmark.Results import Summary
from benchmark.Arguments import ALL_METRICS, Arguments
def main():
arguments = Arguments()
metrics = list(ALL_METRICS)
metrics.append("all")
arguments.xset("score", choices=metrics)
args = arguments.parse()
metrics = ALL_METRICS if args.score == "all" else [args.score]
summary = Summary()
summary.acquire()
nl = 50
num = 100
for metric in metrics:
best = summary.best_results_datasets(score=metric)
for key, item in best.items():
print(f"{key:30s} {item[2]:{nl}s}")
print("-" * num)
print(f"{item[0]:30.7f} {json.dumps(item[1]):{nl}s}")
print("-" * num)
print(f"{item[3]:{nl+num}s}")
print("*" * num)

49
benchmark/scripts/be_build_best
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@@ -1,49 +0,0 @@
#!/usr/bin/env python
import argparse
from benchmark.Results import ReportBest
from benchmark.Experiments import Datasets, BestResults
from benchmark.Utils import ALL_METRICS, EnvDefault
"""Build a json file with the best results of a model and its hyperparameters
"""
def parse_arguments():
ap = argparse.ArgumentParser()
ap.add_argument(
"-s",
"--score",
action=EnvDefault,
envvar="score",
type=str,
required=True,
choices=ALL_METRICS,
help="score name {accuracy, f1_macro, ...}",
)
ap.add_argument(
"-m",
"--model",
action=EnvDefault,
envvar="model",
type=str,
required=True,
help="model name.",
)
ap.add_argument(
"-r",
"--report",
type=bool,
required=False,
help="Generate Report",
)
args = ap.parse_args()
return (args.score, args.model, args.report)
(score, model, report) = parse_arguments()
datasets = Datasets()
best = BestResults(score, model, datasets)
best.build()
if report:
report = ReportBest(score, model, best=True, grid=False)
report.report()

19
benchmark/scripts/be_build_best.py Executable file
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@@ -0,0 +1,19 @@
#!/usr/bin/env python
from benchmark.Results import ReportBest
from benchmark.Experiments import Datasets, BestResults
from benchmark.Arguments import Arguments
"""Build a json file with the best results of a model and its hyperparameters
"""
def main():
arguments = Arguments()
arguments.xset("score").xset("report").xset("model")
args = arguments.parse()
datasets = Datasets()
best = BestResults(args.score, args.model, datasets)
best.build()
if args.report:
report = ReportBest(args.score, args.model, best=True, grid=False)
report.report()

107
benchmark/scripts/be_build_grid
View File

@@ -1,107 +0,0 @@
#!/usr/bin/env python
import os
import json
from benchmark.Utils import Files, Folders
data = [
'{"C": 1e4, "gamma": 0.1, "kernel": "rbf"}',
'{"C": 7, "gamma": 0.14, "kernel": "rbf"}',
'{"C": 0.2, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 0.2, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 0.95, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 0.05, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"kernel": "rbf"}',
'{"kernel": "rbf"}',
'{"C": 1.05, "gamma": "auto","kernel": "rbf"}',
'{"splitter": "random", "max_features": "auto"}',
'{"C": 0.05, "max_features": "auto", "kernel": "liblinear", '
'"multiclass_strategy": "ovr"}',
'{"kernel": "rbf", "C": 0.05}',
'{"C": 0.05, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 7, "gamma": 0.1, "kernel": "rbf"}',
'{"kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 7, "gamma": 0.1, "kernel": "rbf"}',
'{"C": 0.25, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 0.08, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 0.001, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 2.8, "kernel": "rbf", "gamma": "auto"}',
'{"kernel": "rbf"}',
'{"C": 0.05, "gamma": 0.1, "kernel": "poly"}',
'{"C": 8.25, "gamma": 0.1, "kernel": "poly", "multiclass_strategy": '
'"ovr"}',
'{"kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 1.75, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C":57, "kernel": "rbf"}',
'{"C": 7, "gamma": 0.1, "kernel": "rbf", "multiclass_strategy": "ovr"}',
'{"C": 5, "kernel": "rbf", "gamma": "auto"}',
'{"C": 0.05, "max_iter": 10000.0, "kernel": "liblinear", '
'"multiclass_strategy": "ovr"}',
'{"C":0.0275, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 7, "gamma": 10.0, "kernel": "rbf", "multiclass_strategy": "ovr"}',
'{"kernel": "rbf", "gamma": 0.001}',
'{"C": 1e4, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 1.75, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 7, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 2.83, "kernel": "rbf", "gamma": "auto"}',
'{"C": 0.2, "gamma": 0.1, "kernel": "poly", "multiclass_strategy": "ovr"}',
'{"kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 2, "gamma": "auto", "kernel": "rbf"}',
'{"C": 1.75, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
]
results = {}
output = []
hyper = ["C", "gamma", "kernel", "multiclass_strategy"]
kernels = ["linear", "liblinear", "rbf", "poly"]
# initialize results
for kernel in kernels:
results[kernel] = {}
for item in hyper:
results[kernel][item] = []
# load data
for sample in data:
line = json.loads(sample)
if "kernel" not in line:
line["kernel"] = "linear"
kernel = line["kernel"]
for item in hyper:
if item in line and line[item] not in results[kernel][item]:
results[kernel][item].append(line[item])
# Add default values and remove inconsistent values
results["linear"]["multiclass_strategy"] = ["ovo"]
del results["linear"]["gamma"]
del results["liblinear"]["gamma"]
results["rbf"]["gamma"].append("scale")
results["poly"]["gamma"].append("scale")
results["poly"]["multiclass_strategy"].append("ovo")
for kernel in kernels:
results[kernel]["C"].append(1.0)
for item in results:
results_tmp = {"n_jobs": [-1], "n_estimators": [100]}
for key, value in results[item].items():
new_key = f"base_estimator__{key}"
try:
results_tmp[new_key] = sorted(value)
except TypeError:
t1 = sorted(
[
x
for x in value
if isinstance(x, int) or isinstance(x, float)
]
)
t2 = sorted([x for x in value if isinstance(x, str)])
results_tmp[new_key] = t1 + t2
output.append(results_tmp)
# save results
file_name = Files.grid_input("accuracy", "ODTE")
file_output = os.path.join(Folders.results, file_name)
with open(file_output, "w") as f:
json.dump(output, f, indent=4)
print(f"Grid values saved to {file_output}")

112
benchmark/scripts/be_build_grid.py Executable file
View File

@@ -0,0 +1,112 @@
#!/usr/bin/env python
import os
import json
from benchmark.Utils import Files, Folders
def main():
data = [
'{"C": 1e4, "gamma": 0.1, "kernel": "rbf"}',
'{"C": 7, "gamma": 0.14, "kernel": "rbf"}',
'{"C": 0.2, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 0.2, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 0.95, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 0.05, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"kernel": "rbf"}',
'{"kernel": "rbf"}',
'{"C": 1.05, "gamma": "auto","kernel": "rbf"}',
'{"splitter": "random", "max_features": "auto"}',
'{"C": 0.05, "max_features": "auto", "kernel": "liblinear", '
'"multiclass_strategy": "ovr"}',
'{"kernel": "rbf", "C": 0.05}',
'{"C": 0.05, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 7, "gamma": 0.1, "kernel": "rbf"}',
'{"kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 7, "gamma": 0.1, "kernel": "rbf"}',
'{"C": 0.25, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 0.08, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 0.001, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 2.8, "kernel": "rbf", "gamma": "auto"}',
'{"kernel": "rbf"}',
'{"C": 0.05, "gamma": 0.1, "kernel": "poly"}',
'{"C": 8.25, "gamma": 0.1, "kernel": "poly", "multiclass_strategy": '
'"ovr"}',
'{"kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 1.75, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C":57, "kernel": "rbf"}',
'{"C": 7, "gamma": 0.1, "kernel": "rbf", "multiclass_strategy": '
'"ovr"}',
'{"C": 5, "kernel": "rbf", "gamma": "auto"}',
'{"C": 0.05, "max_iter": 10000.0, "kernel": "liblinear", '
'"multiclass_strategy": "ovr"}',
'{"C":0.0275, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 7, "gamma": 10.0, "kernel": "rbf", "multiclass_strategy": '
'"ovr"}',
'{"kernel": "rbf", "gamma": 0.001}',
'{"C": 1e4, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 1.75, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 7, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 2.83, "kernel": "rbf", "gamma": "auto"}',
'{"C": 0.2, "gamma": 0.1, "kernel": "poly", "multiclass_strategy": '
'"ovr"}',
'{"kernel": "liblinear", "multiclass_strategy": "ovr"}',
'{"C": 2, "gamma": "auto", "kernel": "rbf"}',
'{"C": 1.75, "kernel": "liblinear", "multiclass_strategy": "ovr"}',
]
results = {}
output = []
hyper = ["C", "gamma", "kernel", "multiclass_strategy"]
kernels = ["linear", "liblinear", "rbf", "poly"]
# initialize results
for kernel in kernels:
results[kernel] = {}
for item in hyper:
results[kernel][item] = []
# load data
for sample in data:
line = json.loads(sample)
if "kernel" not in line:
line["kernel"] = "linear"
kernel = line["kernel"]
for item in hyper:
if item in line and line[item] not in results[kernel][item]:
results[kernel][item].append(line[item])
# Add default values and remove inconsistent values
results["linear"]["multiclass_strategy"] = ["ovo"]
del results["linear"]["gamma"]
del results["liblinear"]["gamma"]
results["rbf"]["gamma"].append("scale")
results["poly"]["gamma"].append("scale")
results["poly"]["multiclass_strategy"].append("ovo")
for kernel in kernels:
results[kernel]["C"].append(1.0)
for item in results:
results_tmp = {"n_jobs": [-1], "n_estimators": [100]}
for key, value in results[item].items():
new_key = f"base_estimator__{key}"
try:
results_tmp[new_key] = sorted(value)
except TypeError:
t1 = sorted(
[
x
for x in value
if isinstance(x, int) or isinstance(x, float)
]
)
t2 = sorted([x for x in value if isinstance(x, str)])
results_tmp[new_key] = t1 + t2
output.append(results_tmp)
# save results
file_name = Files.grid_input("accuracy", "ODTE")
file_output = os.path.join(Folders.results, file_name)
with open(file_output, "w") as f:
json.dump(output, f, indent=4)
print(f"Grid values saved to {file_output}")

102
benchmark/scripts/be_grid
View File

@@ -1,102 +0,0 @@
#!/usr/bin/env python
import argparse
from benchmark.Experiments import GridSearch, Datasets
from benchmark.Utils import EnvDefault, ALL_METRICS
"""Do experiment and build result file, optionally print report with results
"""
def parse_arguments():
ap = argparse.ArgumentParser()
ap.add_argument(
"-s",
"--score",
action=EnvDefault,
envvar="score",
type=str,
required=True,
choices=ALL_METRICS,
help="score name {accuracy, f1_macro, ...}",
)
ap.add_argument(
"-P",
"--platform",
action=EnvDefault,
envvar="platform",
type=str,
required=True,
help="Platform where the test is run",
)
ap.add_argument(
"-m",
"--model",
type=str,
required=True,
help="model name",
)
ap.add_argument(
"-n",
"--n_folds",
action=EnvDefault,
envvar="n_folds",
type=int,
required=True,
help="number of folds",
)
ap.add_argument(
"-q",
"--quiet",
type=bool,
default=False,
required=False,
help="Wether to show progress bar or not",
)
ap.add_argument(
"-t",
"--stratified",
action=EnvDefault,
envvar="stratified",
type=str,
required=True,
help="Stratified",
)
ap.add_argument(
"-d",
"--dataset",
type=str,
required=True,
default=None,
help="Gridsearch on this dataset",
)
args = ap.parse_args()
return (
args.stratified,
args.score,
args.model,
args.n_folds,
args.platform,
args.quiet,
args.dataset,
)
(
stratified,
score,
model,
folds,
platform,
quiet,
dataset,
) = parse_arguments()
job = GridSearch(
score_name=score,
model_name=model,
stratified=stratified,
datasets=Datasets(dataset_name=dataset),
progress_bar=not quiet,
platform=platform,
folds=folds,
)
job.do_gridsearch()

23
benchmark/scripts/be_grid.py Executable file
View File

@@ -0,0 +1,23 @@
#!/usr/bin/env python
from benchmark.Experiments import GridSearch, Datasets
from benchmark.Arguments import Arguments
"""Do experiment and build result file, optionally print report with results
"""
def main():
arguments = Arguments()
arguments.xset("score").xset("platform").xset("model").xset("n_folds")
arguments.xset("quiet").xset("stratified").xset("dataset")
args = arguments.parse()
job = GridSearch(
score_name=args.score,
model_name=args.model,
stratified=args.stratified,
datasets=Datasets(dataset_name=args.dataset),
progress_bar=not args.quiet,
platform=args.platform,
folds=args.folds,
)
job.do_gridsearch()

103
benchmark/scripts/be_list
View File

@@ -1,103 +0,0 @@
#! /usr/bin/env python
import os
import argparse
from benchmark.Experiments import Models
from benchmark.Results import Summary
from benchmark.Utils import ALL_METRICS, Folders
"""List experiments of a model
"""
def parse_arguments():
ap = argparse.ArgumentParser()
ap.add_argument(
"--nan",
type=bool,
required=False,
help="Move nan results to hidden folder",
)
ap.add_argument(
"-s",
"--score",
type=str,
required=False,
choices=ALL_METRICS,
help="score name {accuracy, f1-macro, f1-weighted, roc-auc-ovr}",
)
models_data = Models.define_models(0)
models = "{" + ", ".join(models_data) + "}"
ap.add_argument(
"-m",
"--model",
type=str,
required=False,
choices=list(models_data),
help=f"model name: {models}",
)
ap.add_argument(
"-k",
"--key",
type=str,
required=False,
default="date",
help="key to sort results",
)
ap.add_argument(
"--hidden",
type=str,
required=False,
default=False,
help="Show hidden results",
)
ap.add_argument(
"-n",
"--number",
type=int,
required=False,
default=0,
help="number of results to show, 0 to any",
)
args = ap.parse_args()
return (
args.nan,
args.score,
args.model,
args.key,
args.number,
args.hidden,
)
if __name__ == "__main__":
(nan, score, model, key, number, hidden) = parse_arguments()
data = Summary(hidden=hidden)
data.acquire()
data.list_results(score=score, model=model, sort_key=key, number=number)
if nan:
results_nan = []
results = data.get_results_criteria(
score=score,
model=model,
input_data=None,
sort_key=key,
number=number,
)
for result in results:
if result["metric"] != result["metric"]:
results_nan.append(result)
if results_nan != []:
print(
"\n"
+ "*" * 30
+ " Results with nan moved to hidden "
+ "*" * 30
)
data.list_results(input_data=results_nan)
for result in results_nan:
name = result["file"]
os.rename(
os.path.join(Folders.results, name),
os.path.join(Folders.hidden_results, name),
)

49
benchmark/scripts/be_list.py Executable file
View File

@@ -0,0 +1,49 @@
#! /usr/bin/env python
import os
from benchmark.Results import Summary
from benchmark.Utils import Folders
from benchmark.Arguments import Arguments
"""List experiments of a model
"""
def main():
arguments = Arguments()
arguments.xset("number").xset("model", required=False).xset("score")
arguments.xset("hidden").xset("nan").xset("key")
args = arguments.parse()
data = Summary(hidden=args.hidden)
data.acquire()
data.list_results(
score=args.score,
model=args.model,
sort_key=args.key,
number=args.number,
)
if args.nan:
results_nan = []
results = data.get_results_criteria(
score=args.score,
model=args.model,
input_data=None,
sort_key=args.key,
number=args.number,
)
for result in results:
if result["metric"] != result["metric"]:
results_nan.append(result)
if results_nan != []:
print(
"\n"
+ "*" * 30
+ " Results with nan moved to hidden "
+ "*" * 30
)
data.list_results(input_data=results_nan)
for result in results_nan:
name = result["file"]
os.rename(
os.path.join(Folders.results, name),
os.path.join(Folders.hidden_results, name),
)

165
benchmark/scripts/be_main
View File

@@ -1,165 +0,0 @@
#!/usr/bin/env python
import os
import argparse
from benchmark.Experiments import Experiment, Datasets, Models
from benchmark.Results import Report
from benchmark.Utils import EnvDefault, ALL_METRICS
"""Do experiment and build result file, optionally print report with results
"""
def parse_arguments():
ap = argparse.ArgumentParser()
ap.add_argument(
"-s",
"--score",
action=EnvDefault,
envvar="score",
type=str,
choices=ALL_METRICS,
required=True,
help="score name {accuracy, f1-macro, f1-weighted, roc-auc-ovr}",
)
ap.add_argument(
"-P",
"--platform",
action=EnvDefault,
envvar="platform",
type=str,
required=True,
help="Platform where the test is run",
)
models_data = Models.define_models(0)
models = "{" + ", ".join(models_data) + "}"
ap.add_argument(
"-m",
"--model",
type=str,
required=True,
choices=list(models_data),
help=f"model name: {models}",
)
ap.add_argument(
"-n",
"--n_folds",
action=EnvDefault,
envvar="n_folds",
type=int,
required=True,
help="number of folds",
)
ap.add_argument(
"-p", "--hyperparameters", type=str, required=False, default="{}"
)
ap.add_argument(
"-f",
"--paramfile",
type=bool,
required=False,
default=False,
help="Use best hyperparams file?",
)
ap.add_argument(
"-g",
"--grid_paramfile",
type=bool,
required=False,
default=False,
help="Use grid searched hyperparams file?",
)
ap.add_argument(
"--title", type=str, required=True, help="experiment title"
)
ap.add_argument(
"-q",
"--quiet",
type=bool,
default=False,
required=False,
help="Wether to show progress bar or not",
)
ap.add_argument(
"-r",
"--report",
type=bool,
default=False,
required=False,
help="Report results",
)
ap.add_argument(
"-t",
"--stratified",
action=EnvDefault,
envvar="stratified",
type=str,
required=True,
help="Stratified",
)
ap.add_argument(
"-d",
"--dataset",
type=str,
required=False,
default=None,
help="Experiment with only this dataset",
)
args = ap.parse_args()
return (
args.stratified,
args.score,
args.model,
args.n_folds,
args.platform,
args.quiet,
args.hyperparameters,
args.paramfile,
args.grid_paramfile,
args.report,
args.title,
args.dataset,
)
if __name__ == "__main__":
(
stratified,
score,
model,
folds,
platform,
quiet,
hyperparameters,
paramfile,
grid_paramfile,
report,
experiment_title,
dataset,
) = parse_arguments()
report = report or dataset is not None
if grid_paramfile:
paramfile = False
job = Experiment(
score_name=score,
model_name=model,
stratified=stratified,
datasets=Datasets(dataset_name=dataset),
hyperparams_dict=hyperparameters,
hyperparams_file=paramfile,
grid_paramfile=grid_paramfile,
progress_bar=not quiet,
platform=platform,
title=experiment_title,
folds=folds,
)
job.do_experiment()
if report:
result_file = job.get_output_file()
report = Report(result_file)
report.report()
if dataset is not None:
print(f"Partial result file removed: {result_file}")
os.remove(result_file)
else:
print(f"Results in {job.get_output_file()}")

44
benchmark/scripts/be_main.py Executable file
View File

@@ -0,0 +1,44 @@
#!/usr/bin/env python
import os
from benchmark.Experiments import Experiment, Datasets
from benchmark.Results import Report
from Arguments import Arguments
"""Do experiment and build result file, optionally print report with results
"""
def main():
arguments = Arguments()
arguments.xset("stratified").xset("score").xset("model").xset("dataset")
arguments.xset("n_folds").xset("platform").xset("quiet").xset("title")
arguments.xset("hyperparameters").xset("paramfile").xset("report")
arguments.xset("grid_paramfile")
args = arguments.parse()
report = args.report or args.dataset is not None
if args.grid_paramfile:
args.paramfile = False
job = Experiment(
score_name=args.score,
model_name=args.model,
stratified=args.stratified,
datasets=Datasets(dataset_name=args.dataset),
hyperparams_dict=args.hyperparameters,
hyperparams_file=args.paramfile,
grid_paramfile=args.grid_paramfile,
progress_bar=not args.quiet,
platform=args.platform,
title=args.experiment_title,
folds=args.folds,
)
job.do_experiment()
if report:
result_file = job.get_output_file()
report = Report(result_file)
report.report()
if args.dataset is not None:
print(f"Partial result file removed: {result_file}")
os.remove(result_file)
else:
print(f"Results in {job.get_output_file()}")

72
benchmark/scripts/be_pair_check
View File

@@ -1,72 +0,0 @@
#!/usr/bin/env python
import argparse
from benchmark.Results import PairCheck
from benchmark.Utils import ALL_METRICS, EnvDefault
"""Check best results of two models giving scores and win-tie-loose results
"""
def parse_arguments():
ap = argparse.ArgumentParser()
ap.add_argument(
"-s",
"--score",
action=EnvDefault,
envvar="score",
type=str,
required=True,
choices=ALL_METRICS,
help="score name {accuracy, f1_macro, ...}",
)
ap.add_argument(
"-m1",
"--model1",
type=str,
required=True,
help="model 1 name",
)
ap.add_argument(
"-m2",
"--model2",
type=str,
required=True,
help="model 2 name",
)
ap.add_argument(
"-w",
"--win",
type=bool,
default=False,
required=False,
help="show win results",
)
ap.add_argument(
"-l",
"--lose",
type=bool,
default=False,
required=False,
help="show lose results",
)
args = ap.parse_args()
return (
args.score,
args.model1,
args.model2,
args.win,
args.lose,
)
if __name__ == "__main__":
(
score,
model1,
model2,
win_results,
lose_results,
) = parse_arguments()
pair_check = PairCheck(score, model1, model2, win_results, lose_results)
pair_check.compute()
pair_check.report()

22
benchmark/scripts/be_pair_check.py Executable file
View File

@@ -0,0 +1,22 @@
#!/usr/bin/env python
from benchmark.Results import PairCheck
from Arguments import Arguments
"""Check best results of two models giving scores and win-tie-loose results
"""
def main():
arguments = Arguments()
arguments.xset("score").xset("win").xset("model1").xset("model2")
arguments.xset("lose")
args = arguments.parse()
pair_check = PairCheck(
args.score,
args.model1,
args.model2,
args.win_results,
args.lose_results,
)
pair_check.compute()
pair_check.report()

42
benchmark/scripts/be_print_strees → benchmark/scripts/be_print_strees.py
View File

@@ -1,42 +1,12 @@
#!/usr/bin/env python
import os
import subprocess
import argparse
import json
from stree import Stree
from graphviz import Source
from benchmark.Experiments import Datasets
from benchmark.Utils import Files, Folders
def parse_arguments():
ap = argparse.ArgumentParser()
ap.add_argument(
"-c",
"--color",
type=bool,
required=False,
default=False,
help="use colors for the tree",
)
ap.add_argument(
"-d",
"--dataset",
type=str,
required=False,
default="all",
help="dataset to print or all",
)
ap.add_argument(
"-q",
"--quiet",
type=bool,
required=False,
default=False,
help="don't print generated tree(s)",
)
args = ap.parse_args()
return (args.color, args.dataset, args.quiet)
from Arguments import Arguments
def compute_stree(X, y, random_state):
@@ -112,13 +82,15 @@ def print_stree(clf, dataset, X, y, color, quiet):
subprocess.run([cmd_open, f"{file_name}.png"])
if __name__ == "__main__":
(color, dataset_chosen, quiet) = parse_arguments()
def main():
arguments = Arguments()
arguments.xset("color").xset("dataset", default="all").xset("quiet")
args = arguments.parse()
hyperparameters = load_hyperparams("accuracy", "ODTE")
random_state = 57
dt = Datasets()
for dataset in dt:
if dataset == dataset_chosen or dataset_chosen == "all":
if dataset == args.dataset or args.dataset == "all":
X, y = dt.load(dataset)
clf = Stree(random_state=random_state)
hyperparams_dataset = hyperparam_filter(
@@ -126,4 +98,4 @@ if __name__ == "__main__":
)
clf.set_params(**hyperparams_dataset)
clf.fit(X, y)
print_stree(clf, dataset, X, y, color, quiet)
print_stree(clf, dataset, X, y, args.color, args.quiet)

23
benchmark/scripts/be_repara
View File

@@ -1,23 +0,0 @@
#!/usr/bin/env python
import os
import json
from benchmark.Experiments import Files, Folders
versions = dict(SVC="-", STree="1.2.3", ODTE="0.3.2")
results = Files().get_all_results(hidden=False)
for result in results:
print(result)
file_name = os.path.join(Folders.results, result)
with open(file_name) as f:
data = json.load(f)
if "title" not in data:
print(f"Repairing title in {result}")
data["title"] = "default"
if "version" not in data:
print(f"Repairing version in {result}")
model = data["model"]
data["version"] = versions[model] if model in versions else "-"
with open(file_name, "w") as f:
json.dump(data, f, indent=4)

23
benchmark/scripts/be_repara.py Executable file
View File

@@ -0,0 +1,23 @@
#!/usr/bin/env python
import os
import json
from benchmark.Experiments import Files, Folders
def main():
versions = dict(SVC="-", STree="1.2.3", ODTE="0.3.2")
results = Files().get_all_results(hidden=False)
for result in results:
print(result)
file_name = os.path.join(Folders.results, result)
with open(file_name) as f:
data = json.load(f)
if "title" not in data:
print(f"Repairing title in {result}")
data["title"] = "default"
if "version" not in data:
print(f"Repairing version in {result}")
model = data["model"]
data["version"] = versions[model] if model in versions else "-"
with open(file_name, "w") as f:
json.dump(data, f, indent=4)

4
benchmark/scripts/be_report → benchmark/scripts/be_report.py
View File

@@ -6,7 +6,7 @@ from benchmark.Utils import (
Files,
TextColor,
)
from benchmark.Models import Arguments
from benchmark.Arguments import Arguments
"""Build report on screen of a result file, optionally generate excel and sql
@@ -41,7 +41,7 @@ def default_report():
)
if __name__ == "__main__":
def main():
arguments = Arguments()
arguments.xset("file").xset("excel").xset("sql").xset("compare")
arguments.xset("best").xset("grid").xset("model", required=False).xset(

53
benchmark/scripts/be_summary
View File

@@ -1,53 +0,0 @@
#!/usr/bin/env python
import argparse
from benchmark.Results import Summary
from benchmark.Utils import EnvDefault, ALL_METRICS
def parse_arguments():
ap = argparse.ArgumentParser()
ap.add_argument(
"-m",
"--model",
type=str,
action=EnvDefault,
envvar="model",
required=True,
help="model name",
)
ap.add_argument(
"-s",
"--score",
type=str,
action=EnvDefault,
envvar="score",
required=True,
choices=ALL_METRICS,
help="score name {accuracy, f1_micro, f1_macro, all}",
)
args = ap.parse_args()
return (
args.score,
args.model,
)
if __name__ == "__main__":
(
score,
model,
) = parse_arguments()
all_metrics = ["accuracy", "f1-macro", "f1-micro"]
metrics = all_metrics if score == "all" else [score]
summary = Summary()
summary.acquire()
for metric in metrics:
title = f"BEST RESULT of {metric} for {model}"
best = summary.best_result(
criterion="model", value=model, score=metric
)
summary.show_result(data=best, title=title)
summary.show_result(
summary.best_result(score=metric), title=f"BEST RESULT of {metric}"
)
summary.show_top(score=metric, n=10)

24
benchmark/scripts/be_summary.py Executable file
View File

@@ -0,0 +1,24 @@
#!/usr/bin/env python
from benchmark.Results import Summary
from benchmark.Arguments import ALL_METRICS, Arguments
def main():
arguments = Arguments()
metrics = list(ALL_METRICS)
metrics.append("all")
arguments.xset("score", choices=metrics).xset("model", required=False)
args = arguments.parse()
metrics = ALL_METRICS if args.score == "all" else [args.score]
summary = Summary()
summary.acquire()
for metric in metrics:
title = f"BEST RESULT of {metric} for {args.model}"
best = summary.best_result(
criterion="model", value=args.model, score=metric
)
summary.show_result(data=best, title=title)
summary.show_result(
summary.best_result(score=metric), title=f"BEST RESULT of {metric}"
)
summary.show_top(score=metric, n=10)

46
benchmark/scripts/be_td
View File

@@ -1,46 +0,0 @@
#!/usr/bin/env python
import sys
import time
from benchmark.Experiments import Datasets
from mufs import MUFS
mufs_i = MUFS()
mufs_c = MUFS()
mufs_f = MUFS()
datasets = Datasets()
iwss_t = iwss_tl = cfs_t = cfs_tl = fcbf_t = fcbf_tl = 0
for i in datasets:
X, y = datasets.load(i)
now = time.time()
mufs_i.iwss(X, y, float(sys.argv[1]))
iwss = time.time() - now
iwss_r = len(mufs_i.get_results())
now = time.time()
mufs_c.cfs(X, y)
cfs = time.time() - now
cfs_r = len(mufs_c.get_results())
now = time.time()
mufs_f.fcbf(X, y, 1e-5)
fcbf = time.time() - now
fcbf_r = len(mufs_f.get_results())
print(
f"{i:30s} {iwss:.4f}({iwss_r:2d}) {cfs:.4f}({cfs_r:2d}) {fcbf:.4f}"
f"({fcbf_r:2d})"
)
iwss_t += iwss
iwss_tl += iwss_r
cfs_t += cfs
cfs_tl += cfs_r
fcbf_t += fcbf
fcbf_tl += fcbf_r
num = len(list(datasets))
iwss_t /= num
iwss_tl /= num
cfs_t /= num
cfs_tl /= num
fcbf_t /= num
fcbf_tl /= num
print(
f"{'Average ..: ':30s} {iwss_t:.4f}({iwss_tl:.2f}) {cfs_t:.4f}"
f"({cfs_tl:.2f}) {fcbf_t:.4f}({fcbf_tl:.2f})"
)

48
benchmark/scripts/be_td.py Executable file
View File

@@ -0,0 +1,48 @@
#!/usr/bin/env python
import sys
import time
from benchmark.Experiments import Datasets
from mufs import MUFS
def main():
mufs_i = MUFS()
mufs_c = MUFS()
mufs_f = MUFS()
datasets = Datasets()
iwss_t = iwss_tl = cfs_t = cfs_tl = fcbf_t = fcbf_tl = 0
for i in datasets:
X, y = datasets.load(i)
now = time.time()
mufs_i.iwss(X, y, float(sys.argv[1]))
iwss = time.time() - now
iwss_r = len(mufs_i.get_results())
now = time.time()
mufs_c.cfs(X, y)
cfs = time.time() - now
cfs_r = len(mufs_c.get_results())
now = time.time()
mufs_f.fcbf(X, y, 1e-5)
fcbf = time.time() - now
fcbf_r = len(mufs_f.get_results())
print(
f"{i:30s} {iwss:.4f}({iwss_r:2d}) {cfs:.4f}({cfs_r:2d}) {fcbf:.4f}"
f"({fcbf_r:2d})"
)
iwss_t += iwss
iwss_tl += iwss_r
cfs_t += cfs
cfs_tl += cfs_r
fcbf_t += fcbf
fcbf_tl += fcbf_r
num = len(list(datasets))
iwss_t /= num
iwss_tl /= num
cfs_t /= num
cfs_tl /= num
fcbf_t /= num
fcbf_tl /= num
print(
f"{'Average ..: ':30s} {iwss_t:.4f}({iwss_tl:.2f}) {cfs_t:.4f}"
f"({cfs_tl:.2f}) {fcbf_t:.4f}({fcbf_tl:.2f})"
)

11
benchmark/tests/Benchmark_test.py
View File

@@ -1,5 +1,4 @@
import os
import shutil
from io import StringIO
from unittest.mock import patch
from openpyxl import load_workbook
@@ -22,14 +21,8 @@ class BenchmarkTest(TestBase):
"Rplots.pdf",
benchmark.get_tex_file(),
]
for file_name in files:
if os.path.exists(file_name):
os.remove(file_name)
file_name = os.path.join(Folders.exreport, file_name)
if os.path.exists(file_name):
os.remove(file_name)
if os.path.exists(Folders.report):
shutil.rmtree(Folders.report)
self.remove_files(files, Folders.exreport)
self.remove_files(files, ".")
return super().tearDown()
def test_csv(self):

5
benchmark/tests/Excel_test.py
View File

@@ -13,10 +13,7 @@ class ExcelTest(TestBase):
"results_accuracy_STree_iMac27_2021-10-27_09:40:40_0.xlsx",
"results_accuracy_ODTE_Galgo_2022-04-20_10:52:20_0.xlsx",
]
for file_name in files:
file_name = os.path.join(Folders.results, file_name)
if os.path.exists(file_name):
os.remove(file_name)
self.remove_files(files, Folders.results)
return super().tearDown()
def test_report_excel_compared(self):

9
benchmark/tests/Experiment_test.py
View File

@@ -1,4 +1,3 @@
import os
import json
from .TestBase import TestBase
from ..Experiments import Experiment, Datasets
@@ -25,8 +24,12 @@ class ExperimentTest(TestBase):
return Experiment(**params)
def tearDown(self) -> None:
if os.path.exists(self.exp.get_output_file()):
os.remove(self.exp.get_output_file())
self.remove_files(
[
self.exp.get_output_file(),
],
".",
)
return super().tearDown()
def test_build_hyperparams_file(self):

9
benchmark/tests/GridSearch_test.py
View File

@@ -1,4 +1,3 @@
import os
import json
from .TestBase import TestBase
from ..Experiments import GridSearch, Datasets
@@ -32,8 +31,12 @@ class GridSearchTest(TestBase):
def test_out_file_not_exits(self):
file_name = self.grid.get_output_file()
if os.path.exists(file_name):
os.remove(file_name)
self.remove_files(
[
file_name,
],
".",
)
_ = self.build_exp()
# check the output file is initialized
with open(file_name) as f:

5
benchmark/tests/SQL_test.py
View File

@@ -9,10 +9,7 @@ class SQLTest(TestBase):
files = [
"results_accuracy_ODTE_Galgo_2022-04-20_10:52:20_0.sql",
]
for file_name in files:
file_name = os.path.join(Folders.results, file_name)
if os.path.exists(file_name):
os.remove(file_name)
self.remove_files(files, Folders.results)
return super().tearDown()
def test_report_SQL(self):

6
benchmark/tests/TestBase.py
View File

@@ -10,6 +10,12 @@ class TestBase(unittest.TestCase):
self.output = "sys.stdout"
super().__init__(*args, **kwargs)
def remove_files(self, files, folder):
for file_name in files:
file_name = os.path.join(folder, file_name)
if os.path.exists(file_name):
os.remove(file_name)
def generate_excel_sheet(self, sheet, file_name):
with open(os.path.join(self.test_files, file_name), "w") as f:
for row in range(1, sheet.max_row + 1):

8
benchmark/tests/Util_test.py
View File

@@ -2,7 +2,8 @@ import os
import sys
import argparse
from .TestBase import TestBase
from ..Utils import Folders, Files, Symbols, TextColor, EnvData, EnvDefault
from ..Utils import Folders, Files, Symbols, TextColor
from ..Arguments import EnvData, EnvDefault
class UtilTest(TestBase):
@@ -266,8 +267,3 @@ class UtilTest(TestBase):
self.assertEqual(TextColor.ENDC, "\033[0m")
self.assertEqual(TextColor.BOLD, "\033[1m")
self.assertEqual(TextColor.UNDERLINE, "\033[4m")
def test_Arguments(self):
arguments = Arguments()
arg_list = ["score", "excel", "tex_output"]
arguments.set_arguments(arg_list)

1
benchmark/tests/__init__.py
View File

@@ -24,4 +24,5 @@ all = [
"BenchmarkTest",
"SummaryTest",
"PairCheckTest",
"be_list",
]

16
setup.py
View File

@@ -59,5 +59,19 @@ setuptools.setup(
"tqdm",
],
zip_safe=False,
scripts=import_scripts(),
entry_points={
"console_scripts": [
"be_list=benchmark.scripts.be_list:main",
"be_report=benchmark.scripts.be_report:main",
"be_main=benchmark.scripts.be_main:main",
"be_benchmark=benchmark.scripts.be_benchmark:main",
"be_best=benchmark.scripts.be_best:main",
"be_build_best=benchmark.scripts.be_build_best:main",
"be_grid=benchmark.scripts.be_grid:main",
"be_pair_check=benchmark.scripts.be_pair_check:main",
"be_print_strees=benchmark.scripts.be_print_strees:main",
"be_repara=benchmark.scripts.be_repara:main",
"be_summary=benchmark.scripts.be_summary:main",
],
},
)